Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G074800 Glycine max HOM05D005529 ORTHO05D006800 9.5e-59 229.9 114 100.0
Glyma.10G219900 Glycine max HOM05D005529 ORTHO05D006800 8.9e-57 223.4 114 97.4
Glyma.20G171800 Glycine max HOM05D005529 ORTHO05D006800 8.9e-57 223.4 114 97.4
Psat6g189800 Pisum sativum HOM05D005529 ORTHO05D006800 2.6e-56 221.9 114 96.5
Lj5g0011658 Lotus japonicus HOM05D005529 ORTHO05D006800 7.5e-56 220.3 114 95.6
Phvul.007G085400 Phaseolus vulgaris HOM05D005529 ORTHO05D006800 7.5e-56 220.3 114 95.6
Medtr1g097380 Medicago truncatula HOM05D005529 ORTHO05D006800 2.2e-55 218.8 114 94.7
Glyma.06G212500 Glycine max HOM05D005529 ORTHO05D006800 2.9e-55 218.4 114 95.6
Ca_10643_v3 Cicer arietinum L. HOM05D005529 ORTHO05D006800 8.3e-55 216.9 114 94.7
Lalb_Chr21g0305631 Lupinus albus HOM05D005529 ORTHO05D006800 8.3e-55 216.9 114 93.9
Lalb_Chr06g0161811 Lupinus albus HOM05D005529 ORTHO05D006800 3.2e-54 214.9 114 93.9
TPR.G23153 Trifolium pratense HOM05D005529 ORTHO05D006800 5.4e-54 214.2 114 92.1
arahy.Tifrunner.gnm1.ann1.MD2PB3 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.5e-51 205.3 114 90.4
arahy.Tifrunner.gnm1.ann1.PZ5J07 Arachis hypogaea HOM05D005529 ORTHO05D006800 2.5e-51 205.3 114 90.4
RcHm_v2.0_Chr6g0273541 Rosa chinensis HOM05D005529 ORTHO05D006800 3.3e-51 204.9 114 86.8
PGR042G1245 Punica granatum HOM05D005529 ORTHO05D006800 7.3e-51 203.8 114 88.6
Cfa018254 Carpinus fangiana HOM05D005529 ORTHO05D006800 9.5e-51 203.4 114 87.7
Haze_17835 Corylus avellana HOM05D005529 ORTHO05D006800 9.5e-51 203.4 114 87.7
Haze_17841 Corylus avellana HOM05D005529 ORTHO05D006800 9.5e-51 203.4 114 87.7
VMungo0720G3143 Vigna mungo HOM05D005529 ORTHO05D006800 9.5e-51 203.4 114 89.5
Potri.005G199600 Populus trichocarpa HOM05D005529 ORTHO05D006800 4.7e-50 201.1 114 86.8
QL02p036323 Quercus lobata HOM05D005529 ORTHO05D006800 8.0e-50 200.3 114 86.8
MD05G1037000 Malus domestica HOM05D005529 ORTHO05D006800 1.0e-49 199.9 114 86.0
CiPaw.15G011100 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.4e-49 199.5 114 86.0
Duzib093G1833 Durio zibethinus HOM05D005529 ORTHO05D006800 1.4e-49 199.5 114 86.8
Solyc12g056770.3 Solanum lycopersicum HOM05D005529 ORTHO05D006800 1.4e-49 199.5 114 86.0
Sopen12g029450 Solanum pennellii HOM05D005529 ORTHO05D006800 1.4e-49 199.5 114 86.0
PGSC0003DMG400016963 Solanum tuberosum HOM05D005529 ORTHO05D006800 1.4e-49 199.5 114 86.0
CANSAT25G1808 Cannabis sativa HOM05D005529 ORTHO05D006800 1.8e-49 199.1 114 84.2
QL02p036742 Quercus lobata HOM05D005529 ORTHO05D006800 1.8e-49 199.1 114 86.0
FvH4_2g12750 Fragaria vesca HOM05D005529 ORTHO05D006800 3.1e-49 198.4 114 84.2
FAN15G0152 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.1e-49 198.4 114 84.2
FAN24G1078 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.1e-49 198.4 114 84.2
FAN27G2439 Fragaria x ananassa HOM05D005529 ORTHO05D006800 3.1e-49 198.4 114 84.2
Prupe.8G045100 Prunus persica HOM05D005529 ORTHO05D006800 3.1e-49 198.4 114 86.0
Sabra05G0151800 Salix brachista HOM05D005529 ORTHO05D006800 5.2e-49 197.6 114 86.0
Thecc.08G196300 Theobroma cacao HOM05D005529 ORTHO05D006800 6.8e-49 197.2 114 86.0
Cpa.g.sc26.128 Carica papaya HOM05D005529 ORTHO05D006800 8.9e-49 196.8 114 85.1
Dinv41017 Davidia involucrata HOM05D005529 ORTHO05D006800 8.9e-49 196.8 114 84.2
Nitab4.5_0004295g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 8.9e-49 196.8 114 85.1
Nitab4.5_0004541g0010 Nicotiana tabacum HOM05D005529 ORTHO05D006800 8.9e-49 196.8 114 85.1
Eucgr.F02670 Eucalyptus grandis HOM05D005529 ORTHO05D006800 1.2e-48 196.4 114 85.1
CiPaw.16G006900 Carya illinoinensis HOM05D005529 ORTHO05D006800 1.5e-48 196.1 114 85.1
CAN.G26.7 Capsicum annuum HOM05D005529 ORTHO05D006800 2.0e-48 195.7 114 83.3
GSVIVG01013675001 Vitis vinifera HOM05D005529 ORTHO05D006800 2.0e-48 195.7 114 83.3
Peaxi162Scf00160g01637 Petunia axillaris HOM05D005529 ORTHO05D006800 2.6e-48 195.3 114 84.2
Migut.C00162 Erythranthe guttata HOM05D005529 ORTHO05D006800 4.4e-48 194.5 114 82.5
Migut.O00737 Erythranthe guttata HOM05D005529 ORTHO05D006800 4.4e-48 194.5 114 82.5
CSS0023417 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 7.5e-48 193.7 114 83.3
Sc26g0003120 Simmondsia chinensis HOM05D005529 ORTHO05D006800 7.5e-48 193.7 114 82.5
Gohir.A05G247200 Gossypium hirsutum HOM05D005529 ORTHO05D006800 9.8e-48 193.4 114 85.1
Gohir.D05G248700 Gossypium hirsutum HOM05D005529 ORTHO05D006800 9.8e-48 193.4 114 85.1
Gorai.009G259800 Gossypium raimondii HOM05D005529 ORTHO05D006800 9.8e-48 193.4 114 85.1
Actinidia15622 Actinidia chinensis HOM05D005529 ORTHO05D006800 1.3e-47 193.0 114 83.3
THA.LOC104800098 Tarenaya hassleriana HOM05D005529 ORTHO05D006800 1.3e-47 193.0 114 82.5
Aqoxy6G00458 Aquilegia oxysepala HOM05D005529 ORTHO05D006800 1.7e-47 192.6 114 83.3
Ah.05g168410 Amaranthus hybridus HOM05D005529 ORTHO05D006800 2.2e-47 192.2 114 83.3
vmacro21201 Vaccinium macrocarpon HOM05D005529 ORTHO05D006800 2.2e-47 192.2 114 81.6
COL.COLO4_05242 Corchorus olitorius HOM05D005529 ORTHO05D006800 2.9e-47 191.8 114 83.3
Cc10_g06360 Coffea canephora HOM05D005529 ORTHO05D006800 3.7e-47 191.4 114 81.6
Manes.02G186100 Manihot esculenta HOM05D005529 ORTHO05D006800 4.9e-47 191.0 115 81.7
AUR62032105 Chenopodium quinoa HOM05D005529 ORTHO05D006800 6.4e-47 190.7 114 81.6
Ciclev10002214m.g Citrus clementina HOM05D005529 ORTHO05D006800 6.4e-47 190.7 114 83.3
Atru.chr13.1964 Acer truncatum HOM05D005529 ORTHO05D006800 1.1e-46 189.9 114 81.6
AL2G31360 Arabidopsis lyrata HOM05D005529 ORTHO05D006800 1.1e-46 189.9 114 81.6
Aa31LG4G8850 Aethionema arabicum HOM05D005529 ORTHO05D006800 2.4e-46 188.7 114 80.7
Nn1g05167 Nelumbo nucifera HOM05D005529 ORTHO05D006800 2.4e-46 188.7 114 80.7
CARHR290990 Cardamine hirsuta HOM05D005529 ORTHO05D006800 3.2e-46 188.3 114 80.7
Thhalv10019028m.g Eutrema salsugineum HOM05D005529 ORTHO05D006800 3.2e-46 188.3 114 80.7
Manes.18G096400 Manihot esculenta HOM05D005529 ORTHO05D006800 3.2e-46 188.3 115 80.9
Sp5g26810 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.1e-46 188.0 114 80.7
SpUn0095_0040 Schrenkiella parvula HOM05D005529 ORTHO05D006800 4.1e-46 188.0 114 80.7
TAR381G0607 Trochodendron aralioides HOM05D005529 ORTHO05D006800 4.1e-46 188.0 114 81.6
AUR62034931 Chenopodium quinoa HOM05D005529 ORTHO05D006800 5.4e-46 187.6 114 79.8
PSO675G2610 Papaver somniferum HOM05D005529 ORTHO05D006800 7.0e-46 187.2 115 80.9
AT1G71790 Arabidopsis thaliana HOM05D005529 ORTHO05D006800 9.2e-46 186.8 114 80.7
PSO541G1243 Papaver somniferum HOM05D005529 ORTHO05D006800 9.2e-46 186.8 115 80.9
SGA_v2.0_scaffold161G37858 Striga asiatica HOM05D005529 ORTHO05D006800 9.2e-46 186.8 114 78.9
BcaC08g46609 Brassica carinata HOM05D005529 ORTHO05D006800 1.2e-45 186.4 114 79.8
A07p37940 Brassica napus HOM05D005529 ORTHO05D006800 1.2e-45 186.4 114 79.8
C06p45850 Brassica napus HOM05D005529 ORTHO05D006800 1.2e-45 186.4 114 79.8
BolC6t39637H Brassica oleracea HOM05D005529 ORTHO05D006800 1.2e-45 186.4 114 79.8
BraA07t31359Z Brassica rapa HOM05D005529 ORTHO05D006800 1.2e-45 186.4 114 79.8
Carub.0002s1855 Capsella rubella HOM05D005529 ORTHO05D006800 1.2e-45 186.4 114 79.8
Hma1.2p1_0358F.1_g134920 Hydrangea macrophylla HOM05D005529 ORTHO05D006800 1.2e-45 186.4 114 80.7
Lj4A706T78 Lonicera japonica HOM05D005529 ORTHO05D006800 2.0e-45 185.7 114 78.9
CSS0031927 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 3.5e-45 184.9 114 80.7
CSS0035962 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.6e-45 184.5 114 80.7
DCAR_019977 Daucus carota HOM05D005529 ORTHO05D006800 4.6e-45 184.5 114 78.1
MSTRG.965 Avicennia marina HOM05D005529 ORTHO05D006800 6.0e-45 184.1 114 78.1
CsaV3_6G004830 Cucumis sativus L. HOM05D005529 ORTHO05D006800 1.0e-44 183.3 114 79.8
Glyma.04G140500 Glycine max HOM05D005529 ORTHO05D006800 1.3e-44 183.0 98 94.9
Sed0025527 Sechium edule HOM05D005529 ORTHO05D006800 1.3e-44 183.0 114 79.8
Oeu027223.1 Olea europaea HOM05D005529 ORTHO05D006800 3.0e-44 181.8 114 78.9
TWI34G1474 Tripterygium wilfordii HOM05D005529 ORTHO05D006800 3.0e-44 181.8 114 79.8
CDE04G0217 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 4.3e-43 177.9 114 75.4
unitig_32.g11170 Utricularia gibba HOM05D005529 ORTHO05D006800 4.7e-42 174.5 114 74.6
Lsat_1_v5_gn_9_42620 Lactuca sativa HOM05D005529 ORTHO05D006800 1.2e-40 169.9 115 71.3
ATR0564G028 Amborella trichopoda HOM05D005529 ORTHO05D006800 2.0e-40 169.1 115 72.2
ECA247G3042 Erigeron canadensis HOM05D005529 ORTHO05D006800 2.6e-40 168.7 115 74.8
Nn5g28882 Nelumbo nucifera HOM05D005529 ORTHO05D006800 3.4e-40 168.3 117 72.6
HanXRQChr11g0320531 Helianthus annuus HOM05D005529 ORTHO05D006800 9.8e-40 166.8 115 71.3
Zm00001eb018520 Zea mays HOM05D005529 ORTHO05D006800 3.7e-39 164.9 114 71.1
ECA232G2783 Erigeron canadensis HOM05D005529 ORTHO05D006800 3.2e-38 161.8 115 68.7
Lsat_1_v5_gn_1_5401 Lactuca sativa HOM05D005529 ORTHO05D006800 5.4e-38 161.0 115 71.3
Os03g0381200 Oryza sativa ssp. japonica HOM05D005529 ORTHO05D006800 1.2e-37 159.8 114 69.3
MELO3C019956.2 Cucumis melo HOM05D005529 ORTHO05D006800 7.3e-35 150.6 97 79.4
ClCG08G007150 Citrullus lanatus HOM05D005529 ORTHO05D006800 1.6e-34 149.4 114 66.7
Pp3c1_32040 Physcomitrium patens HOM05D005529 ORTHO05D006800 1.4e-33 146.4 116 65.5
Mapoly0006s0028 Marchantia polymorpha HOM05D005529 ORTHO05D006800 8.9e-33 143.7 116 65.5
MD10G1040900 Malus domestica HOM05D005529 ORTHO05D006800 4.4e-32 141.4 83 81.9
AagrBONN_evm.TU.Sc2ySwM_228.4378 Anthoceros agrestis HOM05D005529 ORTHO05D006800 1.6e-29 132.9 122 59.0
Actinidia17753 Actinidia chinensis HOM05D005529 ORTHO05D006800 6.0e-29 131.0 89 75.3
TAR625G0192 Trochodendron aralioides HOM05D005529 ORTHO05D006800 1.0e-28 130.2 83 78.3
SMO141G0273 Selaginella moellendorffii HOM05D005529 ORTHO05D006800 8.6e-28 127.1 115 59.1
CDE07G0226 Ceratophyllum demersum HOM05D005529 ORTHO05D006800 2.1e-26 122.5 88 67.0
Lj7C387G8 Lonicera japonica HOM05D005529 ORTHO05D006800 2.9e-23 112.1 114 50.9
HPP92_020744 Vanilla planifolia HOM05D005529 ORTHO05D006800 1.4e-22 109.8 102 56.9
AUR62022308 Chenopodium quinoa HOM05D005529 ORTHO05D006800 3.5e-21 105.1 74 71.6
PRCOL_00004850 Prasinoderma coloniale HOM05D005529 ORTHO05D006800 6.2e-18 94.4 118 48.3
MD10G1039400 Malus domestica HOM05D005529 ORTHO05D006800 2.0e-16 89.4 44 90.9
HPP92_020839 Vanilla planifolia HOM05D005529 ORTHO05D006800 9.3e-14 80.5 55 72.7
CSS0032133 Camellia sinensis var. sinensis HOM05D005529 ORTHO05D006800 4.6e-13 78.2 42 81.0
Haze_27340 Corylus avellana HOM05D005529 ORTHO05D006800 6.0e-13 77.8 119 37.0
Lsat_1_v5_gn_8_71180 Lactuca sativa HOM05D005529 ORTHO05D006800 5.8e-08 61.2 83 47.0
Cfa022509 Carpinus fangiana HOM05D005529 ORTHO05D006800 2.2e-07 59.3 84 40.5
MD10G1041000 Malus domestica HOM05D005529 ORTHO05D006800 4.9e-07 58.2 32 81.2


User provided reference genes

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