Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 3.0e-114 415.2 218 100.0
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 3.9e-93 345.1 219 84.9
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 2.5e-52 209.5 211 56.4
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.7e-48 196.8 201 59.7
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 6.0e-46 188.3 214 56.1
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 4.3e-44 182.2 182 64.3
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 7.4e-44 181.4 221 50.7
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.3e-43 180.6 212 55.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 2.1e-43 179.9 218 50.5
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 8.2e-43 177.9 128 73.4
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 8.2e-43 177.9 118 71.2
TPR.G12599 Trifolium pratense HOM05D003803 ORTHO05D004456 1.1e-42 177.6 217 53.5
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 1.2e-41 174.1 219 53.0
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 3.4e-41 172.6 118 69.5
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 3.4e-41 172.6 127 64.6
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 3.4e-41 172.6 110 74.5
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.7e-40 170.2 119 66.4
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 1.7e-40 170.2 119 67.2
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 5.0e-40 168.7 193 59.1
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.5e-40 168.3 114 71.1
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 6.5e-40 168.3 114 71.1
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 6.5e-40 168.3 126 61.9
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.9e-39 166.8 240 45.0
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 3.2e-39 166.0 274 42.7
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 4.2e-39 165.6 120 67.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 9.3e-39 164.5 224 52.2
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 3.6e-38 162.5 86 83.7
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.0e-37 161.0 103 70.9
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.3e-37 160.6 105 66.7
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 1.3e-37 160.6 130 63.1
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 1.3e-37 160.6 208 49.5
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 2.3e-37 159.8 110 69.1
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 3.0e-37 159.5 119 66.4
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 3.9e-37 159.1 127 62.2
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 6.7e-37 158.3 98 78.6
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.9e-36 156.8 127 63.8
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 2.5e-36 156.4 123 61.8
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 3.3e-36 156.0 177 55.9
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 4.3e-36 155.6 217 52.1
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 4.3e-36 155.6 121 64.5
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 5.7e-36 155.2 109 67.0
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.4e-36 154.8 169 51.5
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 9.7e-36 154.5 167 59.3
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 1.3e-35 154.1 98 79.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 2.2e-35 153.3 106 71.7
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 2.2e-35 153.3 120 62.5
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 2.8e-35 152.9 209 49.8
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 2.8e-35 152.9 102 71.6
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 3.7e-35 152.5 197 47.7
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 3.7e-35 152.5 197 47.7
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 4.8e-35 152.1 114 64.0
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 2.4e-34 149.8 200 50.0
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 6.9e-34 148.3 89 74.2
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 1.5e-33 147.1 158 55.7
Lalb_Chr11g0074261 Lupinus albus HOM05D003803 ORTHO05D004456 2.0e-33 146.7 196 47.4
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 3.4e-33 146.0 114 62.3
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 5.9e-33 145.2 184 45.7
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 7.7e-33 144.8 110 66.4
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.0e-32 144.4 115 60.0
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.7e-32 143.7 119 58.8
C09p55600 Brassica napus HOM05D003803 ORTHO05D004456 2.9e-32 142.9 205 48.8
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 6.5e-32 141.7 203 50.2
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 6.5e-32 141.7 222 46.8
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 1.1e-31 141.0 106 67.0
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 1.4e-31 140.6 114 57.9
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 1.4e-31 140.6 114 57.9
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 1.9e-31 140.2 114 57.9
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 1.9e-31 140.2 114 61.4
Gohir.D07G014900 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.5e-31 139.8 224 44.2
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 3.2e-31 139.4 99 68.7
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 7.2e-31 138.3 227 51.5
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 7.2e-31 138.3 210 52.9
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 1.2e-30 137.5 220 47.7
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.6e-30 136.0 98 66.3
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 3.6e-30 136.0 218 43.1
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 3.6e-30 136.0 115 59.1
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 4.6e-30 135.6 93 67.7
BolC9t58422H Brassica oleracea HOM05D003803 ORTHO05D004456 6.1e-30 135.2 220 47.7
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 6.1e-30 135.2 99 65.7
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 6.1e-30 135.2 93 71.0
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 6.1e-30 135.2 228 47.4
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 7.9e-30 134.8 115 56.5
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 7.9e-30 134.8 115 56.5
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 7.9e-30 134.8 120 59.2
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 1.0e-29 134.4 223 48.4
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.4e-29 134.0 235 44.7
PSO104G0196 Papaver somniferum HOM05D003803 ORTHO05D004456 1.8e-29 133.7 218 45.4
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 3.9e-29 132.5 110 59.1
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 5.1e-29 132.1 140 50.7
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 1.1e-28 131.0 215 49.3
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 3.3e-28 129.4 115 55.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 3.3e-28 129.4 115 55.7
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 9.7e-28 127.9 93 68.8
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 1.3e-27 127.5 94 69.1
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.7e-27 127.1 236 41.1
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 2.2e-27 126.7 93 67.7
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 2.2e-27 126.7 92 68.5
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.8e-26 123.6 86 66.3
Manes.11G018700 Manihot esculenta HOM05D003803 ORTHO05D004456 1.2e-25 120.9 205 38.5
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 1.7e-24 117.1 114 54.4
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 2.5e-23 113.2 85 68.2
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 4.2e-23 112.5 76 75.0
DCAR_024755 Daucus carota HOM05D003803 ORTHO05D004456 7.2e-23 111.7 166 42.2
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 2.7e-22 109.8 104 60.6
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 2.7e-22 109.8 104 60.6
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.0e-21 107.8 84 64.3
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.0e-21 107.8 63 74.6
RcHm_v2.0_Chr6g0246401 Rosa chinensis HOM05D003803 ORTHO05D004456 1.0e-21 107.8 80 65.0
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 1.4e-21 107.5 78 73.1
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 1.1e-20 104.4 71 70.4
HPP92_004363 Vanilla planifolia HOM05D003803 ORTHO05D004456 1.5e-20 104.0 81 58.0
HanXRQChr10g0319741 Helianthus annuus HOM05D003803 ORTHO05D004456 3.3e-20 102.8 103 57.3
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 2.2e-19 100.1 79 62.0
ATR0598G175 Amborella trichopoda HOM05D003803 ORTHO05D004456 3.7e-19 99.4 93 52.7
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 3.7e-19 99.4 62 71.0
Zm00001eb314160 Zea mays HOM05D003803 ORTHO05D004456 8.2e-19 98.2 103 46.6
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 1.1e-18 97.8 69 75.4
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 1.1e-18 97.8 191 38.2
Zm00001eb100230 Zea mays HOM05D003803 ORTHO05D004456 1.8e-18 97.1 103 46.6
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 1.2e-17 94.4 73 65.8
HPP92_016238 Vanilla planifolia HOM05D003803 ORTHO05D004456 2.0e-17 93.6 88 53.4
Medtr8g021170 Medicago truncatula HOM05D003803 ORTHO05D004456 2.6e-17 93.2 121 47.1
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 3.5e-17 92.8 113 46.9
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 4.5e-17 92.4 175 39.4
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 5.9e-17 92.0 209 39.7
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 2.2e-16 90.1 115 45.2
Os08g0456600 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 2.9e-16 89.7 215 41.4
Os09g0441900 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 8.5e-16 88.2 92 47.8
Glyma.07G040200 Glycine max HOM05D003803 ORTHO05D004456 1.9e-15 87.0 109 45.0
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 2.5e-15 86.7 84 58.3
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.2e-15 86.3 69 63.8
Atru.chr1.4007 Acer truncatum HOM05D003803 ORTHO05D004456 4.2e-15 85.9 67 62.7
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 9.4e-15 84.7 60 75.0
Lsat_1_v5_gn_4_94241 Lactuca sativa HOM05D003803 ORTHO05D004456 1.2e-14 84.3 209 34.9
Lalb_Chr04g0263591 Lupinus albus HOM05D003803 ORTHO05D004456 1.6e-14 84.0 209 32.5
SEGI_34897 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 1.6e-14 84.0 74 54.1
ECA232G3825 Erigeron canadensis HOM05D003803 ORTHO05D004456 3.6e-14 82.8 220 36.4
QL05p003994 Quercus lobata HOM05D003803 ORTHO05D004456 3.6e-14 82.8 101 42.6
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.0e-13 81.3 64 67.2
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 1.4e-13 80.9 69 63.8
TPR.G16739 Trifolium pratense HOM05D003803 ORTHO05D004456 1.4e-13 80.9 70 58.6
HanXRQChr12g0354391 Helianthus annuus HOM05D003803 ORTHO05D004456 1.2e-12 77.8 116 41.4
RcHm_v2.0_Chr6g0246681 Rosa chinensis HOM05D003803 ORTHO05D004456 2.6e-12 76.6 61 59.0
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 4.4e-12 75.9 70 62.9
COL.COLO4_30738 Corchorus olitorius HOM05D003803 ORTHO05D004456 7.5e-12 75.1 67 56.7
MBI13_g43925_MAGBIO Magnolia biondii HOM05D003803 ORTHO05D004456 9.7e-12 74.7 50 64.0
HanXRQChr09g0276811 Helianthus annuus HOM05D003803 ORTHO05D004456 1.3e-11 74.3 66 56.1
Psat4g168440 Pisum sativum HOM05D003803 ORTHO05D004456 1.3e-11 74.3 65 56.9
SGA_v2.0_scaffold609G53181 Striga asiatica HOM05D003803 ORTHO05D004456 1.3e-11 74.3 67 58.2
SEGI_33452 Sequoiadendron giganteum HOM05D003803 ORTHO05D004456 4.8e-11 72.4 92 40.2
Zm00001eb019600 Zea mays HOM05D003803 ORTHO05D004456 1.1e-10 71.2 104 42.3
Thecc.06G122400 Theobroma cacao HOM05D003803 ORTHO05D004456 9.1e-10 68.2 202 35.1
Os03g0407400 Oryza sativa ssp. japonica HOM05D003803 ORTHO05D004456 3.5e-09 66.2 102 38.2
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.7e-08 63.9 52 65.4
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 2.9e-08 63.2 51 68.6
Haze_16046 Corylus avellana HOM05D000015 ORTHO05D000249 8.5e-08 61.6 60 51.7
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 1.5e-07 60.8 50 66.0
ATR0626G331 Amborella trichopoda HOM05D002369 ORTHO05D002435 4.2e-07 59.3 71 47.9
Hund20657 Selenicereus undatus HOM05D002369 ORTHO05D002435 4.2e-07 59.3 61 52.5
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 5.5e-07 58.9 38 78.9
Thhalv10021823m.g Eutrema salsugineum HOM05D002369 ORTHO05D002435 7.2e-07 58.5 55 52.7
Mapoly0073s0064 Marchantia polymorpha HOM05D002369 ORTHO05D002435 7.2e-07 58.5 84 40.5
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 1.2e-06 57.8 38 78.9
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.1e-06 57.0 51 56.9
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.1e-06 57.0 43 69.8
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 2.1e-06 57.0 44 65.9
AagrBONN_evm.TU.Sc2ySwM_362.2112 Anthoceros agrestis HOM05D002369 ORTHO05D002435 2.7e-06 56.6 62 38.7
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 3.6e-06 56.2 69 49.3
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 3.6e-06 56.2 48 60.4
ClCG05G004760 Citrullus lanatus HOM05D002369 ORTHO05D002435 6.1e-06 55.5 55 50.9
CiPaw.01G193600 Carya illinoinensis HOM05D002369 ORTHO05D002435 8.0e-06 55.1 73 42.5
Sed0012894 Sechium edule HOM05D002369 ORTHO05D002435 8.0e-06 55.1 86 40.7


User provided reference genes

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