Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 1.6e-103 379.4 190 100.0
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 9.8e-101 370.2 193 96.9
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 3.4e-93 345.1 194 90.7
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 9.8e-93 343.6 193 89.1
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 8.3e-92 340.5 193 90.2
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 1.4e-91 339.7 194 88.7
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 5.4e-91 337.8 193 88.1
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 5.4e-91 337.8 194 88.7
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 7.0e-91 337.4 194 88.1
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 7.0e-91 337.4 194 89.7
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 1.2e-90 336.7 194 89.7
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.0e-90 335.9 192 87.5
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 5.9e-90 334.3 193 86.0
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 1.3e-89 333.2 194 86.6
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 3.9e-89 331.6 194 88.7
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 3.9e-89 331.6 198 86.4
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 1.9e-88 329.3 194 84.5
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 4.3e-88 328.2 193 86.5
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 2.1e-87 325.9 193 85.5
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 2.1e-87 325.9 193 86.0
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.6e-87 325.1 193 86.0
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 3.6e-87 325.1 198 84.8
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 3.6e-87 325.1 193 85.5
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 1.4e-86 323.2 195 86.7
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.8e-86 322.8 193 85.5
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 1.8e-86 322.8 193 84.5
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 4.0e-86 321.6 194 85.1
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 5.2e-86 321.2 193 83.9
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 5.2e-86 321.2 194 82.0
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 8.9e-86 320.5 194 85.6
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 1.2e-85 320.1 194 83.0
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 1.5e-85 319.7 193 82.9
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.5e-85 319.7 195 85.1
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.5e-85 319.7 196 82.7
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 2.0e-85 319.3 198 83.8
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.0e-85 319.3 196 83.7
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 2.6e-85 318.9 193 82.9
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 2.6e-85 318.9 200 82.5
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 2.6e-85 318.9 198 82.3
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.4e-85 318.5 200 80.0
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.4e-85 318.5 200 80.0
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 7.5e-85 317.4 198 81.3
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.3e-84 316.6 193 82.9
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.3e-84 316.6 193 82.9
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.3e-84 316.6 201 80.6
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 2.2e-84 315.8 200 80.5
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 2.2e-84 315.8 200 79.0
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 3.7e-84 315.1 193 80.3
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 4.9e-84 314.7 193 82.4
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 6.4e-84 314.3 196 81.6
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 8.3e-84 313.9 193 80.8
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.1e-83 313.5 193 80.8
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 81.4
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.1e-83 313.5 194 81.4
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.4e-83 312.4 200 79.5
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.4e-83 312.4 195 81.5
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 2.4e-83 312.4 194 80.9
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 2.4e-83 312.4 193 81.9
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 4.1e-83 311.6 199 79.9
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 4.1e-83 311.6 199 79.9
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 4.1e-83 311.6 194 82.0
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 5.4e-83 311.2 199 79.4
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 7.0e-83 310.8 193 79.8
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 9.2e-83 310.5 193 81.9
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.2e-82 310.1 193 81.9
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 2.0e-82 309.3 196 81.6
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 3.5e-82 308.5 201 79.1
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 4.6e-82 308.1 198 80.8
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 6.0e-82 307.8 198 79.3
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 6.0e-82 307.8 198 79.3
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.0e-82 307.8 201 78.6
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 7.8e-82 307.4 199 78.9
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 7.8e-82 307.4 193 79.3
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 7.8e-82 307.4 199 78.9
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 7.8e-82 307.4 193 79.8
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.8e-82 307.4 193 79.8
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.0e-81 307.0 193 79.8
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 1.7e-81 306.2 197 79.2
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.7e-81 306.2 195 79.0
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.7e-81 306.2 202 78.2
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 1.7e-81 306.2 191 77.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 2.3e-81 305.8 193 79.3
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.9e-81 305.1 198 77.3
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 3.9e-81 305.1 197 78.7
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 3.9e-81 305.1 200 78.0
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 5.0e-81 304.7 206 76.7
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 5.0e-81 304.7 203 76.8
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 6.6e-81 304.3 199 76.9
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 8.6e-81 303.9 199 77.9
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 8.6e-81 303.9 201 76.6
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 8.6e-81 303.9 199 78.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 1.1e-80 303.5 199 77.9
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 1.1e-80 303.5 204 74.5
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 1.5e-80 303.1 199 76.9
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 1.9e-80 302.8 199 77.9
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.9e-80 302.8 199 77.9
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 1.9e-80 302.8 193 79.3
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 1.9e-80 302.8 198 81.3
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 1.9e-80 302.8 201 76.6
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 2.5e-80 302.4 193 78.8
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 5.6e-80 301.2 199 77.4
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 3.6e-79 298.5 193 77.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 3.6e-79 298.5 199 77.4
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 3.6e-79 298.5 199 74.9
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 4.7e-79 298.1 196 76.5
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 4.7e-79 298.1 191 77.5
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 4.7e-79 298.1 199 74.9
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 4.7e-79 298.1 216 71.8
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 8.1e-79 297.4 190 81.1
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 8.1e-79 297.4 242 66.5
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 1.1e-78 297.0 199 77.9
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.4e-78 296.6 198 77.8
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 1.8e-78 296.2 202 74.3
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 2.3e-78 295.8 209 73.2
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 2.3e-78 295.8 193 79.3
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 3.4e-77 292.0 174 85.6
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.8e-77 291.2 175 85.1
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 2.2e-76 289.3 211 71.6
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 3.7e-76 288.5 186 80.1
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 1.9e-75 286.2 180 81.1
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 5.4e-75 284.6 182 78.6
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 6.0e-74 281.2 214 70.6
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 7.8e-74 280.8 223 68.2
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 2.3e-73 279.3 194 69.6
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 8.6e-73 277.3 189 75.7
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 8.6e-73 277.3 175 80.0
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 1.1e-72 276.9 189 72.0
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 5.6e-72 274.6 180 78.9
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 9.5e-72 273.9 193 68.9
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 1.6e-71 273.1 201 72.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 4.7e-71 271.6 237 65.4
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.4e-70 270.0 193 73.1
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 8.9e-70 267.3 203 70.4
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.8e-69 264.6 181 70.2
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 2.4e-67 259.2 183 67.8
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 5.4e-67 258.1 187 71.7
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.2e-66 256.9 213 66.2
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 2.3e-65 252.7 182 70.9
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 2.8e-63 245.7 190 66.8
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 2.8e-63 245.7 199 62.8
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.8e-62 243.0 174 67.2
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 8.4e-60 234.2 177 71.2
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 1.1e-56 223.8 201 60.7
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 9.0e-54 214.2 153 73.2
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 5.4e-51 204.9 117 88.9
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.9e-49 198.7 116 84.5
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 2.2e-44 183.0 177 59.3
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 5.5e-43 178.3 98 91.8
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.0e-41 174.1 99 88.9
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 8.7e-41 171.0 189 57.7
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 2.1e-39 166.4 106 81.1
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.6e-34 148.7 97 75.3
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.4e-30 137.1 190 47.9
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 4.1e-30 135.6 70 95.7
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 5.3e-30 135.2 97 73.2
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.3e-28 130.6 98 70.4
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 6.5e-28 128.3 79 81.0
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 7.2e-27 124.8 194 42.3
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.9e-25 119.0 69 75.4
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 1.1e-22 110.9 100 66.0
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 2.6e-21 106.3 190 41.6
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 2.6e-21 106.3 187 39.0
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 7.2e-19 98.2 190 39.5
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-18 97.4 72 73.6
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 2.0e-16 90.1 71 63.4
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 1.3e-15 87.4 163 36.2
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 4.1e-14 82.4 51 80.4
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.9e-14 81.6 53 77.4
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 9.1e-14 81.3 64 65.6
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 1.2e-13 80.9 62 66.1
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 1.6e-10 70.5 61 63.9
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 3.9e-09 65.9 72 51.4
CSS0000142 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.4e-06 57.4 57 59.6


User provided reference genes

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