Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 1.1e-46 189.5 90 100.0
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 2.1e-45 185.3 90 96.7
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.9e-38 162.2 90 85.6
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 4.4e-35 151.0 90 76.7
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 2.2e-34 148.7 90 77.8
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.9e-34 148.3 88 77.3
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 6.4e-34 147.1 90 76.7
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 4.1e-33 144.4 88 73.9
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 4.1e-33 144.4 91 70.3
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 5.4e-33 144.1 88 69.3
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 5.4e-33 144.1 88 75.0
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 7.0e-33 143.7 88 72.7
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 9.2e-33 143.3 88 75.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 1.2e-32 142.9 88 73.9
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.6e-32 142.5 88 72.7
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.7e-32 141.7 90 72.2
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.7e-32 141.7 90 72.2
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 2.7e-32 141.7 88 72.7
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 4.6e-32 141.0 88 72.7
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 6.0e-32 140.6 88 72.7
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 6.0e-32 140.6 88 71.6
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 7.8e-32 140.2 88 72.7
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 7.8e-32 140.2 88 71.6
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.0e-31 139.8 88 70.5
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.3e-31 139.4 88 71.6
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 1.3e-31 139.4 88 70.5
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 1.3e-31 139.4 88 69.3
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 2.3e-31 138.7 88 69.3
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 3.0e-31 138.3 85 74.1
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 3.9e-31 137.9 88 69.3
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 5.1e-31 137.5 86 69.8
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 6.6e-31 137.1 88 68.2
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 6.6e-31 137.1 90 71.1
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 1.5e-30 136.0 88 68.2
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 1.9e-30 135.6 88 67.0
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.9e-30 135.6 90 70.0
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 2.5e-30 135.2 90 70.0
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 4.3e-30 134.4 85 70.6
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 68.2
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.3e-30 134.4 88 68.2
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 5.6e-30 134.0 88 68.2
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 7.3e-30 133.7 88 67.0
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 9.5e-30 133.3 88 65.9
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 9.5e-30 133.3 88 65.9
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 1.2e-29 132.9 88 67.0
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.2e-29 132.9 85 70.6
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.2e-29 132.9 88 67.0
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.6e-29 132.5 82 73.2
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.1e-29 132.1 88 65.9
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 4.7e-29 131.0 88 67.0
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.7e-29 131.0 88 64.8
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 4.7e-29 131.0 88 64.8
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 6.2e-29 130.6 88 62.5
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 6.2e-29 130.6 88 63.6
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 8.1e-29 130.2 88 64.8
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 8.1e-29 130.2 93 64.5
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 1.1e-28 129.8 82 72.0
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.4e-28 129.4 88 62.5
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 1.4e-28 129.4 90 63.3
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.4e-28 129.4 82 70.7
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 1.8e-28 129.0 88 69.3
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 1.8e-28 129.0 88 69.3
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 3.1e-28 128.3 85 67.1
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 3.1e-28 128.3 88 65.9
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 3.1e-28 128.3 88 65.9
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.0e-28 127.9 88 65.9
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 4.0e-28 127.9 88 61.4
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 4.0e-28 127.9 88 61.4
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 6.8e-28 127.1 85 67.1
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 8.9e-28 126.7 88 63.6
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.9e-28 126.7 84 67.9
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.9e-28 126.7 84 67.9
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.9e-28 126.7 84 67.9
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 8.9e-28 126.7 84 67.9
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 8.9e-28 126.7 91 61.5
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 8.9e-28 126.7 88 58.0
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 8.9e-28 126.7 88 64.8
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 8.9e-28 126.7 88 64.8
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 1.2e-27 126.3 88 64.8
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.2e-27 126.3 88 63.6
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 1.5e-27 125.9 88 64.8
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.5e-27 125.9 88 62.5
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 1.5e-27 125.9 88 63.6
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.0e-27 125.6 84 67.9
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 2.0e-27 125.6 90 64.4
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 2.0e-27 125.6 88 61.4
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.6e-27 125.2 84 66.7
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 7.5e-27 123.6 88 65.9
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 9.9e-27 123.2 82 63.4
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 1.3e-26 122.9 84 61.9
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 3.7e-26 121.3 82 63.4
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 3.7e-26 121.3 82 63.4
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.9e-26 120.9 84 65.5
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 6.4e-26 120.6 88 59.1
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.1e-25 119.8 84 61.9
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 3.2e-25 118.2 88 60.2
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 3.2e-25 118.2 88 58.0
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 3.2e-25 118.2 84 61.9
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 4.1e-25 117.9 88 60.2
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 7.1e-25 117.1 88 60.2
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 7.1e-25 117.1 88 59.1
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 9.2e-25 116.7 88 59.1
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 9.2e-25 116.7 88 58.0
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 1.6e-24 115.9 88 56.8
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 1.6e-24 115.9 88 56.8
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 1.6e-24 115.9 88 56.8
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 1.6e-24 115.9 88 56.8
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 1.6e-24 115.9 88 56.8
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 4.6e-24 114.4 88 59.1
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 6.0e-24 114.0 88 56.8
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 7.8e-24 113.6 88 56.8
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 7.8e-24 113.6 88 55.7
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 2.3e-23 112.1 88 56.8
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 2.3e-23 112.1 88 56.8
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 2.3e-23 112.1 88 56.8
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 2.3e-23 112.1 88 56.8
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.7e-21 104.4 87 56.3
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 8.9e-20 100.1 87 55.2
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 1.5e-19 99.4 89 52.8
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 9.9e-19 96.7 74 52.7
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 6.4e-18 94.0 75 53.3
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.1e-17 93.2 59 69.5
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 2.7e-16 88.6 63 61.9
Nitab4.5_0006750g0010 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.3e-15 86.3 57 63.2
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 6.6e-15 84.0 60 58.3
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.4e-12 76.3 57 59.6
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 5.3e-12 74.3 83 42.2
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 5.3e-12 74.3 60 56.7
GSVIVG01010862001 Vitis vinifera HOM05D004945 ORTHO05D005536 2.6e-11 72.0 64 51.6
Nn8g40786 Nelumbo nucifera HOM05D004945 ORTHO05D005536 5.8e-11 70.9 52 59.6
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 9.9e-11 70.1 57 56.1
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 9.9e-11 70.1 57 56.1
Nitab4.5_0002354g0060 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.7e-10 69.3 45 66.7
BcaC09g51779 Brassica carinata HOM05D004945 ORTHO05D005536 7.1e-09 63.9 71 40.8
BcaNung06654 Brassica carinata HOM05D004945 ORTHO05D005536 7.1e-09 63.9 71 40.8
Oeu001819.1 Olea europaea HOM05D004945 ORTHO05D005536 1.6e-08 62.8 75 44.0
Dinv24096 Davidia involucrata HOM05D019947 ORTHO05D005536 4.6e-08 61.2 43 58.1
Dinv44937 Davidia involucrata HOM05D004945 ORTHO05D005536 4.6e-08 61.2 43 58.1
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 1.1e-06 56.6 70 38.6
FAN12G2758 Fragaria x ananassa HOM05D034259 ORTHO05D005536 4.3e-06 54.7 35 62.9
FAN17G0629 Fragaria x ananassa HOM05D034259 ORTHO05D005536 4.3e-06 54.7 35 62.9
FAN22G1974 Fragaria x ananassa HOM05D034259 ORTHO05D005536 4.3e-06 54.7 35 62.9
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 9.6e-06 53.5 88 29.5
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 9.6e-06 53.5 80 37.5
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 9.6e-06 53.5 80 37.5


User provided reference genes

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