Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 7.6e-161 570.5 292 100.0
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 1.3e-139 500.0 302 87.7
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 3.0e-133 478.8 296 86.1
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 2.4e-130 469.2 295 85.1
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 1.8e-117 426.4 294 79.3
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 5.3e-114 414.8 298 75.8
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 2.9e-112 409.1 303 74.6
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 3.8e-112 408.7 299 76.6
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 8.2e-107 391.0 292 76.7
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 5.3e-106 388.3 302 72.5
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 4.5e-97 358.6 312 68.3
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 3.0e-93 345.9 290 67.2
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 3.4e-92 342.4 288 66.7
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 3.4e-92 342.4 288 66.7
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 9.8e-92 340.9 288 66.7
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.7e-91 340.1 297 68.4
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 2.2e-91 339.7 277 68.2
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 4.1e-90 335.5 297 67.7
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 4.1e-90 335.5 278 67.3
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 2.7e-89 332.8 281 66.5
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 5.9e-89 331.6 281 67.6
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 5.0e-88 328.6 292 68.2
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 5.0e-88 328.6 293 66.6
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 2.7e-86 322.8 298 62.8
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 3.6e-86 322.4 297 67.0
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 3.6e-86 322.4 275 64.7
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.7e-83 313.5 295 62.4
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.8e-82 310.1 297 61.6
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 2.3e-80 303.1 297 59.9
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 7.3e-79 298.1 299 58.9
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.6e-78 297.0 296 60.8
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.8e-78 296.2 284 63.4
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 1.4e-77 293.9 301 59.5
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 1.4e-77 293.9 281 63.0
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 5.2e-77 292.0 294 61.2
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 6.8e-77 291.6 293 61.8
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 1.5e-76 290.4 292 62.0
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 2.6e-76 289.7 302 59.3
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.7e-75 287.0 299 56.9
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 2.2e-75 286.6 282 59.6
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.2e-75 286.6 295 60.3
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 2.9e-75 286.2 264 65.9
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 2.9e-75 286.2 298 59.7
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 2.9e-75 286.2 297 60.9
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 8.3e-75 284.6 396 49.2
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 2.4e-74 283.1 273 63.0
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.4e-74 283.1 295 59.0
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.4e-74 283.1 295 59.0
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 4.1e-74 282.3 197 80.2
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 9.2e-74 281.2 295 59.3
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.7e-73 279.6 303 57.8
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 3.0e-72 276.2 315 55.2
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 3.9e-72 275.8 294 58.2
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 3.9e-72 275.8 295 59.0
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 6.6e-72 275.0 293 56.0
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 6.6e-72 275.0 281 58.7
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 1.9e-71 273.5 311 57.6
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 7.3e-71 271.6 295 58.0
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 9.5e-71 271.2 286 56.3
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.2e-70 270.8 310 58.4
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 2.8e-70 269.6 279 61.3
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 2.8e-70 269.6 279 58.1
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 6.2e-70 268.5 295 56.9
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 2.3e-69 266.5 286 55.2
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 3.1e-69 266.2 281 57.3
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 6.8e-69 265.0 297 58.2
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 6.8e-69 265.0 297 58.2
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 6.8e-69 265.0 308 59.1
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 6.8e-69 265.0 276 55.8
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 1.2e-68 264.2 298 55.0
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 1.5e-68 263.8 290 54.1
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 3.4e-68 262.7 281 61.2
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 3.4e-68 262.7 247 60.7
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.4e-68 262.3 290 53.8
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 5.8e-68 261.9 269 58.0
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 7.5e-68 261.5 284 55.3
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.3e-67 260.8 294 56.1
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.3e-67 260.8 261 55.6
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.2e-67 260.0 270 61.1
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 8.3e-67 258.1 303 52.1
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 1.1e-66 257.7 299 55.9
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 1.4e-66 257.3 294 54.1
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 1.4e-66 257.3 267 58.8
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 3.2e-66 256.1 275 56.0
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 9.2e-66 254.6 280 52.9
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 9.2e-66 254.6 294 57.1
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.0e-65 253.4 301 53.2
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 3.5e-65 252.7 296 57.8
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 4.6e-65 252.3 265 57.4
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 4.6e-65 252.3 285 59.3
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 2.3e-64 250.0 291 55.7
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 6.6e-64 248.4 266 56.4
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 2.5e-63 246.5 294 58.8
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 1.1e-61 241.1 294 53.4
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 3.1e-61 239.6 278 56.8
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-60 237.7 282 54.6
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 2.6e-60 236.5 265 57.0
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 8.3e-59 231.5 256 56.6
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 4.6e-57 225.7 309 54.4
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 2.3e-56 223.4 294 51.7
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 8.6e-56 221.5 297 52.9
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 1.2e-54 217.6 293 50.5
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 2.1e-54 216.9 297 48.8
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 2.1e-54 216.9 296 51.7
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 2.8e-54 216.5 303 52.8
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 8.1e-54 214.9 249 57.0
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 8.1e-54 214.9 297 49.8
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 5.2e-53 212.2 294 48.6
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 8.9e-53 211.5 302 47.7
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 7.6e-52 208.4 231 56.7
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 2.2e-51 206.8 250 55.2
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 2.9e-51 206.5 291 46.4
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 5.4e-50 202.2 252 52.0
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-49 201.1 292 50.3
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 1.2e-49 201.1 285 47.0
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 1.0e-48 198.0 244 52.5
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 6.6e-48 195.3 289 45.3
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 2.2e-43 180.3 183 63.4
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 4.3e-39 166.0 163 58.9
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 1.3e-38 164.5 151 64.2
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 3.6e-38 162.9 233 48.5
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 2.4e-37 160.2 249 45.0
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 2.0e-36 157.1 246 45.5
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 3.4e-36 156.4 308 38.0
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 5.8e-36 155.6 225 44.4
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 1.7e-35 154.1 299 40.8
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 6.4e-35 152.1 249 43.4
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 1.6e-33 147.5 267 39.3
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 8.7e-32 141.7 353 35.7
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 2.0e-28 130.6 277 39.4
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 8.4e-27 125.2 97 71.1
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.4e-26 124.4 285 33.7
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 2.7e-25 120.2 217 42.9
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 4.5e-20 102.8 258 34.9
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 7.6e-20 102.1 170 40.6
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 1.9e-18 97.4 71 76.1
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 3.4e-12 76.6 82 50.0
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 6.5e-11 72.4 118 40.7
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 1.2e-09 68.2 133 41.4
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 1.3e-08 64.7 98 41.8
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 8.7e-08 62.0 118 33.1
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 4.3e-07 59.7 84 41.7
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 2.2e-06 57.4 57 54.4
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 2.8e-06 57.0 59 50.8


User provided reference genes

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