Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 3.5e-169 598.2 304 100.0
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.2e-153 546.6 304 92.8
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 4.6e-145 518.1 304 87.5
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 2.4e-141 505.8 305 83.9
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 1.7e-131 473.0 307 78.5
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 4.7e-129 464.9 307 77.5
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 3.1e-125 452.2 315 77.8
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 5.9e-124 448.0 310 76.1
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 1.2e-119 433.7 309 74.1
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 2.0e-116 422.9 307 72.3
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 5.9e-116 421.4 310 72.9
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 1.3e-115 420.2 307 72.3
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 6.5e-115 417.9 309 70.6
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.3e-99 367.1 308 63.0
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 2.5e-98 362.8 300 62.0
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 3.3e-98 362.5 339 59.6
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 9.5e-98 360.9 339 59.3
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.2e-97 360.5 310 63.9
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 7.5e-95 351.3 303 62.7
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 8.3e-94 347.8 316 62.0
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.1e-93 345.5 304 58.6
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.0e-91 340.9 312 61.9
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 8.6e-91 337.8 307 59.3
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.5e-90 337.0 299 59.2
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.5e-90 337.0 299 59.2
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 1.6e-89 333.6 307 58.6
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.8e-89 332.8 313 57.5
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.7e-89 332.0 299 58.5
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 8.0e-89 331.3 306 60.5
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.3e-88 329.7 306 60.1
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 3.1e-88 329.3 313 57.8
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 4.0e-88 328.9 325 56.0
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 5.2e-88 328.6 325 56.6
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 6.8e-88 328.2 310 57.1
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.2e-87 327.4 310 57.7
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.0e-87 326.6 306 59.5
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 2.0e-87 326.6 314 60.8
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 3.4e-87 325.9 301 57.5
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 4.4e-87 325.5 325 56.0
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 7.5e-87 324.7 309 56.3
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 2.2e-86 323.2 304 55.9
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.1e-85 320.9 309 57.0
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 5.4e-85 318.5 309 59.9
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 1.6e-84 317.0 318 56.9
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 6.0e-84 315.1 308 57.1
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 6.0e-84 315.1 327 54.7
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.0e-83 314.3 308 55.8
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 1.7e-83 313.5 310 59.4
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 1.7e-83 313.5 315 59.4
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 3.0e-83 312.8 318 56.0
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.5e-82 310.5 305 55.7
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 2.8e-81 306.2 309 54.4
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 6.2e-81 305.1 312 56.7
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 1.8e-80 303.5 287 58.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.5e-79 300.4 308 52.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 3.4e-79 299.3 308 53.2
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 3.4e-79 299.3 300 56.3
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 5.8e-79 298.5 304 53.6
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 3.7e-78 295.8 308 55.8
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 1.6e-76 290.4 309 53.4
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.6e-76 290.4 309 53.7
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.0e-75 287.7 310 52.6
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 1.3e-75 287.3 311 55.0
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 1.7e-75 287.0 316 53.5
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 2.3e-75 286.6 307 53.4
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 3.9e-75 285.8 303 53.5
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 5.1e-75 285.4 293 56.3
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 2.5e-74 283.1 308 52.6
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 2.5e-74 283.1 308 51.3
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.5e-74 283.1 310 54.2
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 3.3e-74 282.7 309 53.1
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.6e-73 280.4 314 52.9
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.1e-73 280.0 299 55.2
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.1e-73 280.0 308 52.9
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 3.1e-72 276.2 313 53.4
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 6.8e-72 275.0 300 53.0
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 6.8e-72 275.0 305 53.1
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 6.8e-72 275.0 307 54.7
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 8.9e-72 274.6 260 58.1
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 8.9e-72 274.6 293 52.2
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.2e-70 270.0 314 51.9
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 3.2e-69 266.2 266 54.9
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 6.0e-68 261.9 314 50.3
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 6.6e-67 258.5 300 49.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 5.6e-66 255.4 250 58.4
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.4e-64 250.8 310 48.4
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 1.8e-64 250.4 301 51.2
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.3e-62 244.2 320 50.0
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 3.8e-62 242.7 307 48.2
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 8.4e-62 241.5 310 49.0
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 3.2e-61 239.6 321 50.8
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.6e-60 237.3 331 51.4
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 2.1e-60 236.9 317 50.8
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 2.1e-60 236.9 315 48.9
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 2.7e-60 236.5 317 50.8
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 6.0e-60 235.3 307 47.2
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 5.1e-59 232.3 316 49.4
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 8.7e-59 231.5 307 46.6
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 8.7e-59 231.5 395 38.2
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-58 231.1 317 49.8
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.1e-58 231.1 317 49.8
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 1.5e-58 230.7 305 45.9
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 2.5e-58 229.9 311 46.9
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.8e-57 226.5 335 46.0
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 6.9e-56 221.9 233 51.1
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 9.0e-56 221.5 333 44.7
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.5e-55 220.7 333 45.6
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.5e-55 220.7 338 45.0
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 2.4e-53 213.4 286 45.8
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.0e-51 208.0 254 48.0
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 3.0e-51 206.5 313 40.3
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 4.9e-46 189.1 303 41.9
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 2.5e-45 186.8 188 52.7
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 5.5e-45 185.7 298 39.3
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.7e-42 175.6 144 59.0
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 4.8e-41 172.6 315 42.5
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 1.8e-40 170.6 304 43.4
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 4.1e-40 169.5 224 47.3
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 4.5e-39 166.0 147 57.8
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 8.4e-38 161.8 354 37.3
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.9e-37 160.6 300 40.7
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 3.5e-36 156.4 244 45.5
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.0e-35 154.8 190 47.4
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 3.0e-35 153.3 178 53.4
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.5e-34 150.2 115 62.6
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.3e-33 147.9 190 48.4
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 2.2e-33 147.1 115 61.7
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 2.4e-32 143.7 147 53.1
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 3.1e-32 143.3 159 47.8
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 4.5e-31 139.4 158 47.5
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 5.9e-31 139.0 175 46.3
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 2.2e-30 137.1 102 65.7
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 3.8e-30 136.3 173 47.4
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 5.0e-30 136.0 294 37.1
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 5.0e-30 136.0 173 47.4
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 1.1e-29 134.8 168 46.4
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.6e-28 131.0 253 38.3
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.0e-27 128.3 176 43.8
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 3.0e-27 126.7 117 59.8
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 3.9e-27 126.3 287 40.8
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-26 124.8 287 39.7
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.1e-26 124.8 287 40.4
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.5e-26 123.6 255 34.9
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 6.3e-25 119.0 106 59.4
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 2.7e-20 103.6 125 49.6
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 6.1e-20 102.4 131 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 3.5e-15 86.7 177 37.9
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 1.7e-14 84.3 103 48.5
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 5.5e-13 79.3 57 64.9
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 2.1e-12 77.4 71 52.1
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 1.8e-11 74.3 52 67.3
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-09 68.2 55 58.2
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 4.8e-09 66.2 78 50.0
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.6e-07 61.2 135 40.7
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 2.2e-06 57.4 199 24.1


User provided reference genes

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