Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G047200 Glycine max HOM05D005256 ORTHO05D006491 1.7e-74 283.1 208 100.0
Glyma.15G154700 Glycine max HOM05D005256 ORTHO05D006491 1.3e-69 266.9 148 98.6
Phvul.009G245700 Phaseolus vulgaris HOM05D005256 ORTHO05D006491 8.6e-58 227.6 148 85.8
Lj6g0014214 Lotus japonicus HOM05D005256 ORTHO05D006491 1.6e-56 223.4 148 85.8
Medtr2g437530 Medicago truncatula HOM05D005256 ORTHO05D006491 2.1e-56 223.0 148 83.1
arahy.Tifrunner.gnm1.ann1.QDE700 Arachis hypogaea HOM05D005256 ORTHO05D006491 8.9e-55 217.6 140 84.3
Sabra03G0114000 Salix brachista HOM05D005256 ORTHO05D006491 3.4e-54 215.7 148 80.4
TPR.G31382 Trifolium pratense HOM05D005256 ORTHO05D006491 5.8e-54 214.9 147 81.0
arahy.Tifrunner.gnm1.ann1.98CSRD Arachis hypogaea HOM05D005256 ORTHO05D006491 7.5e-54 214.5 135 85.9
VMungo1309G1298 Vigna mungo HOM05D005256 ORTHO05D006491 1.7e-53 213.4 134 88.8
Ca_02405_v3 Cicer arietinum L. HOM05D005256 ORTHO05D006491 2.9e-53 212.6 149 79.9
Lalb_Chr18g0051841 Lupinus albus HOM05D005256 ORTHO05D006491 2.9e-53 212.6 149 81.9
Sabra01G0052200 Salix brachista HOM05D005256 ORTHO05D006491 3.7e-53 212.2 148 79.1
Atru.chr10.203 Acer truncatum HOM05D005256 ORTHO05D006491 6.4e-53 211.5 150 80.0
Potri.003G157100 Populus trichocarpa HOM05D005256 ORTHO05D006491 7.0e-52 208.0 151 76.8
Eucgr.D00001 Eucalyptus grandis HOM05D005256 ORTHO05D006491 1.6e-51 206.8 142 81.0
Psat1g152160 Pisum sativum HOM05D005256 ORTHO05D006491 1.6e-51 206.8 144 79.2
Rhsim13G0136300 Rhododendron simsii HOM05D005256 ORTHO05D006491 2.0e-51 206.5 142 79.6
Potri.001G073900 Populus trichocarpa HOM05D005256 ORTHO05D006491 2.7e-51 206.1 149 77.9
Dinv07938 Davidia involucrata HOM05D005256 ORTHO05D006491 1.3e-50 203.8 141 80.1
Dinv18415 Davidia involucrata HOM05D005256 ORTHO05D006491 1.3e-50 203.8 141 80.1
QL11p010746 Quercus lobata HOM05D005256 ORTHO05D006491 2.3e-50 203.0 149 76.5
Lalb_Chr15g0083621 Lupinus albus HOM05D005256 ORTHO05D006491 3.0e-50 202.6 140 82.1
EL10Ac7g17298 Beta vulgaris HOM05D005256 ORTHO05D006491 5.0e-50 201.8 147 76.9
Sopen10g001120 Solanum pennellii HOM05D005256 ORTHO05D006491 6.6e-50 201.4 148 72.3
Nn1g09867 Nelumbo nucifera HOM05D005256 ORTHO05D006491 8.6e-50 201.1 138 80.4
vmacro03574 Vaccinium macrocarpon HOM05D005256 ORTHO05D006491 1.1e-49 200.7 138 79.7
Lsat_1_v5_gn_2_59820 Lactuca sativa HOM05D005256 ORTHO05D006491 3.3e-49 199.1 136 77.9
Solyc10g005100.3 Solanum lycopersicum HOM05D005256 ORTHO05D006491 3.3e-49 199.1 144 73.6
CSS0021462 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 4.3e-49 198.7 140 77.9
CSS0003949 Camellia sinensis var. sinensis HOM05D005256 ORTHO05D006491 7.3e-49 198.0 134 79.9
GSVIVG01001340001 Vitis vinifera HOM05D005256 ORTHO05D006491 7.3e-49 198.0 136 80.9
Oeu005126.1 Olea europaea HOM05D005256 ORTHO05D006491 1.2e-48 197.2 146 75.3
TAR624G1249 Trochodendron aralioides HOM05D005256 ORTHO05D006491 1.2e-48 197.2 141 77.3
TWI63G0333 Tripterygium wilfordii HOM05D005256 ORTHO05D006491 1.6e-48 196.8 148 75.0
Hma1.2p1_0082F.1_g042560 Hydrangea macrophylla HOM05D005256 ORTHO05D006491 2.1e-48 196.4 145 75.2
Peaxi162Scf00888g00114 Petunia axillaris HOM05D005256 ORTHO05D006491 4.7e-48 195.3 144 75.0
TAR626G1126 Trochodendron aralioides HOM05D005256 ORTHO05D006491 8.0e-48 194.5 131 81.7
Ciclev10016618m.g Citrus clementina HOM05D005256 ORTHO05D006491 1.4e-47 193.7 144 77.8
MBI07_g44405_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.4e-47 193.7 146 74.7
CAN.G465.5 Capsicum annuum HOM05D005256 ORTHO05D006491 3.1e-47 192.6 136 75.7
CiPaw.09G140800 Carya illinoinensis HOM05D005256 ORTHO05D006491 3.1e-47 192.6 135 77.0
Nitab4.5_0004778g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 3.1e-47 192.6 138 74.6
Haze_05185 Corylus avellana HOM05D005256 ORTHO05D006491 4.0e-47 192.2 135 79.3
AUR62040985 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.5e-46 190.3 144 75.7
PGSC0003DMG400011293 Solanum tuberosum HOM05D005256 ORTHO05D006491 2.0e-46 189.9 143 73.4
Prupe.4G121100 Prunus persica HOM05D005256 ORTHO05D006491 3.4e-46 189.1 135 80.0
MD05G1242300 Malus domestica HOM05D005256 ORTHO05D006491 5.8e-46 188.3 145 75.2
MD10G1224100 Malus domestica HOM05D005256 ORTHO05D006491 5.8e-46 188.3 151 74.2
Manes.16G060225 Manihot esculenta HOM05D005256 ORTHO05D006491 9.8e-46 187.6 133 75.9
Oeu052922.1 Olea europaea HOM05D005256 ORTHO05D006491 1.4e-44 183.7 146 69.2
HanXRQChr14g0439031 Helianthus annuus HOM05D005256 ORTHO05D006491 1.9e-44 183.3 146 70.5
RcHm_v2.0_Chr5g0022081 Rosa chinensis HOM05D005256 ORTHO05D006491 4.1e-44 182.2 146 72.6
Cpa.g.sc30.65 Carica papaya HOM05D005256 ORTHO05D006491 5.4e-44 181.8 148 67.6
Sc17g0004300 Simmondsia chinensis HOM05D005256 ORTHO05D006491 7.0e-44 181.4 145 71.0
AT4G20260 Arabidopsis thaliana HOM05D005256 ORTHO05D006491 1.2e-43 180.6 148 68.9
Ah.15g091820 Amaranthus hybridus HOM05D005256 ORTHO05D006491 1.6e-43 180.3 152 69.1
AL7G33640 Arabidopsis lyrata HOM05D005256 ORTHO05D006491 2.1e-43 179.9 148 68.2
MSTRG.14820 Avicennia marina HOM05D005256 ORTHO05D006491 2.1e-43 179.9 144 70.8
Hund20133 Selenicereus undatus HOM05D005256 ORTHO05D006491 6.0e-43 178.3 151 66.9
FvH4_3g13370 Fragaria vesca HOM05D005256 ORTHO05D006491 1.0e-42 177.6 146 69.2
FAN11G1371 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.0e-42 177.6 146 69.2
CARHR227090 Cardamine hirsuta HOM05D005256 ORTHO05D006491 2.3e-42 176.4 153 66.7
ECA238G2220 Erigeron canadensis HOM05D005256 ORTHO05D006491 2.3e-42 176.4 131 74.8
FAN21G0853 Fragaria x ananassa HOM05D005256 ORTHO05D006491 3.0e-42 176.0 146 68.5
Aa31LG6G2690 Aethionema arabicum HOM05D005256 ORTHO05D006491 3.9e-42 175.6 140 65.0
ATR0737G015 Amborella trichopoda HOM05D005256 ORTHO05D006491 3.9e-42 175.6 153 69.3
FAN16G0515 Fragaria x ananassa HOM05D005256 ORTHO05D006491 6.6e-42 174.9 146 67.8
Lsat_1_v5_gn_8_107621 Lactuca sativa HOM05D005256 ORTHO05D006491 8.6e-42 174.5 131 71.0
CiPaw.10G108500 Carya illinoinensis HOM05D005256 ORTHO05D006491 1.1e-41 174.1 137 73.0
FAN25G1093 Fragaria x ananassa HOM05D005256 ORTHO05D006491 1.1e-41 174.1 146 67.8
THA.LOC104812925 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 1.1e-41 174.1 135 71.9
CANSAT35G0328 Cannabis sativa HOM05D005256 ORTHO05D006491 1.5e-41 173.7 134 69.4
Thhalv10026094m.g Eutrema salsugineum HOM05D005256 ORTHO05D006491 1.9e-41 173.3 149 66.4
MBI06_g04184_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 1.9e-41 173.3 139 69.1
COL.COLO4_25022 Corchorus olitorius HOM05D005256 ORTHO05D006491 7.3e-41 171.4 133 72.2
A01p11960 Brassica napus HOM05D005256 ORTHO05D006491 3.6e-40 169.1 148 64.9
CDE02G1470 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 6.2e-40 168.3 136 66.9
BraA03t14315Z Brassica rapa HOM05D005256 ORTHO05D006491 1.1e-39 167.5 148 63.5
CDE10G0480 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 1.1e-39 167.5 136 68.4
Cc09_g04590 Coffea canephora HOM05D005256 ORTHO05D006491 1.1e-39 167.5 133 67.7
BcaC09g51326 Brassica carinata HOM05D005256 ORTHO05D006491 1.4e-39 167.2 148 64.2
C01p14230 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-39 167.2 148 64.2
BolC1t01388H Brassica oleracea HOM05D005256 ORTHO05D006491 1.4e-39 167.2 148 64.2
BraA01t01138Z Brassica rapa HOM05D005256 ORTHO05D006491 1.4e-39 167.2 148 64.2
HPP92_008810 Vanilla planifolia HOM05D005256 ORTHO05D006491 1.8e-39 166.8 130 71.5
Peaxi162Scf01310g00311 Petunia axillaris HOM05D005256 ORTHO05D006491 3.1e-39 166.0 136 66.9
Sp7g18620 Schrenkiella parvula HOM05D005256 ORTHO05D006491 3.1e-39 166.0 148 64.2
THA.LOC104811953 Tarenaya hassleriana HOM05D005256 ORTHO05D006491 3.1e-39 166.0 135 67.4
C07p50830 Brassica napus HOM05D005256 ORTHO05D006491 4.0e-39 165.6 148 62.8
BolC7t45581H Brassica oleracea HOM05D005256 ORTHO05D006491 4.0e-39 165.6 148 62.8
CDE10G1097 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 5.2e-39 165.2 137 67.2
SalBow7G1744 Salvia bowleyana HOM05D005256 ORTHO05D006491 6.8e-39 164.9 132 67.4
BcaC06g30648 Brassica carinata HOM05D005256 ORTHO05D006491 8.9e-39 164.5 148 62.2
A03p52380 Brassica napus HOM05D005256 ORTHO05D006491 8.9e-39 164.5 148 62.2
ECA232G1901 Erigeron canadensis HOM05D005256 ORTHO05D006491 1.5e-38 163.7 131 68.7
BcaNung03497 Brassica carinata HOM05D005256 ORTHO05D006491 2.0e-38 163.3 148 62.2
Carub.0007s2091 Capsella rubella HOM05D005256 ORTHO05D006491 2.6e-38 162.9 147 61.2
FAN25G0981 Fragaria x ananassa HOM05D005256 ORTHO05D006491 2.6e-38 162.9 146 66.4
HanXRQChr15g0487481 Helianthus annuus HOM05D005256 ORTHO05D006491 2.6e-38 162.9 131 66.4
Migut.L00006 Erythranthe guttata HOM05D005256 ORTHO05D006491 7.5e-38 161.4 131 69.5
Thecc.02G000700 Theobroma cacao HOM05D005256 ORTHO05D006491 1.4e-36 157.1 126 68.3
AUR62042105 Chenopodium quinoa HOM05D005256 ORTHO05D006491 1.6e-35 153.7 149 64.4
PSO541G2657 Papaver somniferum HOM05D005256 ORTHO05D006491 1.6e-35 153.7 137 62.8
PSO675G8904 Papaver somniferum HOM05D005256 ORTHO05D006491 1.6e-35 153.7 137 62.8
BcaNung03716 Brassica carinata HOM05D005256 ORTHO05D006491 1.7e-34 150.2 144 62.5
CDE09G1225 Ceratophyllum demersum HOM05D005256 ORTHO05D006491 2.5e-33 146.4 138 59.4
HanXRQChr09g0257711 Helianthus annuus HOM05D005256 ORTHO05D006491 9.5e-33 144.4 131 60.3
A06p47070 Brassica napus HOM05D005256 ORTHO05D006491 1.2e-32 144.1 151 60.3
BraA06t27579Z Brassica rapa HOM05D005256 ORTHO05D006491 1.2e-32 144.1 151 60.3
Nitab4.5_0000217g0040 Nicotiana tabacum HOM05D005256 ORTHO05D006491 2.1e-32 143.3 135 62.2
Aa31LG9G8540 Aethionema arabicum HOM05D005256 ORTHO05D006491 4.7e-32 142.1 148 55.4
Nitab4.5_0012748g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 4.7e-32 142.1 111 70.3
Os02g0285300 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 8.1e-32 141.4 144 58.3
C07p27480 Brassica napus HOM05D005256 ORTHO05D006491 1.4e-31 140.6 132 62.9
BcaC04g21824 Brassica carinata HOM05D005256 ORTHO05D006491 2.4e-31 139.8 151 56.3
C09p27010 Brassica napus HOM05D005256 ORTHO05D006491 2.4e-31 139.8 151 56.3
BolC9t55584H Brassica oleracea HOM05D005256 ORTHO05D006491 2.4e-31 139.8 151 56.3
BcaB07g30517 Brassica carinata HOM05D005256 ORTHO05D006491 5.2e-31 138.7 141 60.3
BcaC06g34533 Brassica carinata HOM05D005256 ORTHO05D006491 5.2e-31 138.7 151 58.3
BolC7t43278H Brassica oleracea HOM05D005256 ORTHO05D006491 6.8e-31 138.3 132 62.1
A09p21180 Brassica napus HOM05D005256 ORTHO05D006491 1.5e-30 137.1 151 55.6
BraA09t37724Z Brassica rapa HOM05D005256 ORTHO05D006491 1.5e-30 137.1 151 55.6
Sp2g09430 Schrenkiella parvula HOM05D005256 ORTHO05D006491 2.2e-29 133.3 150 55.3
BcaB07g30940 Brassica carinata HOM05D005256 ORTHO05D006491 8.4e-29 131.3 151 54.3
DCAR_003732 Daucus carota HOM05D005256 ORTHO05D006491 1.4e-28 130.6 131 55.7
Nitab4.5_0001253g0020 Nicotiana tabacum HOM05D005256 ORTHO05D006491 5.4e-28 128.6 135 57.8
MBI06_g26562_MAGBIO Magnolia biondii HOM05D005256 ORTHO05D006491 3.0e-26 122.9 99 67.7
C02p45090 Brassica napus HOM05D005256 ORTHO05D006491 8.1e-24 114.8 141 55.3
BolC2t10548H Brassica oleracea HOM05D005256 ORTHO05D006491 8.1e-24 114.8 141 55.3
Lalb_Chr20g0114421 Lupinus albus HOM05D005256 ORTHO05D006491 3.1e-23 112.8 82 81.7
Zm00001eb339340 Zea mays HOM05D005256 ORTHO05D006491 3.1e-23 112.8 146 50.7
Os01g0233000 Oryza sativa ssp. japonica HOM05D005256 ORTHO05D006491 6.9e-23 111.7 145 51.7
Zm00001eb119130 Zea mays HOM05D005256 ORTHO05D006491 9.0e-23 111.3 132 53.0
Zm00001eb236850 Zea mays HOM05D005256 ORTHO05D006491 1.2e-22 110.9 115 59.1
Lsat_1_v5_gn_9_9820 Lactuca sativa HOM05D005256 ORTHO05D006491 9.3e-20 101.3 101 61.4
SGA_v2.0_scaffold51G18675 Striga asiatica HOM05D003701 ORTHO05D004771 2.1e-16 90.1 68 75.0
Mapoly0087s0006 Marchantia polymorpha HOM05D005256 ORTHO05D006491 1.2e-06 57.8 150 34.7
Zm00001eb381370 Zea mays HOM05D005256 ORTHO05D006491 3.4e-06 56.2 60 56.7


User provided reference genes

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