Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G043500 Glycine max HOM05D003565 ORTHO05D003943 6.0e-80 300.8 157 100.0
Phvul.009G249400 Phaseolus vulgaris HOM05D003565 ORTHO05D003943 2.3e-55 219.2 155 74.2
VMungo1309G1767 Vigna mungo HOM05D003565 ORTHO05D003943 7.4e-54 214.2 137 75.9
Medtr2g436350 Medicago truncatula HOM05D003565 ORTHO05D003943 2.3e-47 192.6 156 67.3
Lalb_Chr15g0083411 Lupinus albus HOM05D003565 ORTHO05D003943 1.3e-45 186.8 155 65.8
Psat1g155160 Pisum sativum HOM05D003565 ORTHO05D003943 2.2e-45 186.0 155 63.9
Lj6g0014140 Lotus japonicus HOM05D003565 ORTHO05D003943 7.7e-43 177.6 159 64.8
TPR.G31280 Trifolium pratense HOM05D003565 ORTHO05D003943 2.0e-38 162.9 119 68.9
Dinv29764 Davidia involucrata HOM05D003565 ORTHO05D003943 8.2e-37 157.5 148 59.5
Thecc.04G287000 Theobroma cacao HOM05D003565 ORTHO05D003943 1.1e-36 157.1 148 59.5
Sabra10G0007900 Salix brachista HOM05D003565 ORTHO05D003943 5.3e-36 154.8 156 51.9
Potri.010G012400 Populus trichocarpa HOM05D003565 ORTHO05D003943 3.5e-35 152.1 156 51.9
Duzib151G1023 Durio zibethinus HOM05D003565 ORTHO05D003943 8.5e-34 147.5 149 54.4
Gorai.011G191400 Gossypium raimondii HOM05D003565 ORTHO05D003943 1.9e-33 146.4 155 54.8
CSS0008161 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 7.2e-33 144.4 158 54.4
Hma1.2p1_1807F.1_g303350 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 7.2e-33 144.4 152 55.3
Cpa.g.sc16.191 Carica papaya HOM05D003565 ORTHO05D003943 2.1e-32 142.9 150 52.7
Gohir.A10G165200 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.4e-31 140.2 155 53.5
Gohir.D10G171300 Gossypium hirsutum HOM05D003565 ORTHO05D003943 1.8e-31 139.8 155 53.5
SGA_v2.0_scaffold18G08345 Striga asiatica HOM05D003565 ORTHO05D003943 4.0e-31 138.7 158 51.3
Actinidia28386 Actinidia chinensis HOM05D003565 ORTHO05D003943 8.8e-31 137.5 150 52.0
SalBow2G0621 Salvia bowleyana HOM05D003565 ORTHO05D003943 8.8e-31 137.5 153 49.7
GSVIVG01035140001 Vitis vinifera HOM05D003565 ORTHO05D003943 1.2e-30 137.1 158 50.6
Migut.O00777 Erythranthe guttata HOM05D003565 ORTHO05D003943 1.5e-30 136.7 157 49.0
CiPaw.02G081300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.7e-29 133.3 151 51.0
SalBow2G2654 Salvia bowleyana HOM05D003565 ORTHO05D003943 2.2e-29 132.9 156 49.4
vmacro15222 Vaccinium macrocarpon HOM05D003565 ORTHO05D003943 2.8e-29 132.5 158 50.6
MSTRG.10106 Avicennia marina HOM05D003565 ORTHO05D003943 3.1e-28 129.0 154 50.0
COL.COLO4_13836 Corchorus olitorius HOM05D003565 ORTHO05D003943 9.1e-28 127.5 163 47.2
MBI18_g24867_MAGBIO Magnolia biondii HOM05D003565 ORTHO05D003943 9.1e-28 127.5 150 50.0
CSS0017850 Camellia sinensis var. sinensis HOM05D003565 ORTHO05D003943 2.0e-27 126.3 157 49.7
Sed0004032 Sechium edule HOM05D003565 ORTHO05D003943 2.7e-27 125.9 156 46.2
Rhsim02G0008000 Rhododendron simsii HOM05D003565 ORTHO05D003943 3.5e-27 125.6 149 50.3
ClCG05G006170 Citrullus lanatus HOM05D003565 ORTHO05D003943 4.5e-27 125.2 153 44.4
MD00G1127800 Malus domestica HOM05D003565 ORTHO05D003943 7.7e-27 124.4 150 51.3
Prupe.1G133600 Prunus persica HOM05D003565 ORTHO05D003943 1.0e-26 124.0 147 50.3
Prupe.1G133700 Prunus persica HOM05D003565 ORTHO05D003943 1.0e-26 124.0 143 52.4
CsaV3_3G014750 Cucumis sativus L. HOM05D003565 ORTHO05D003943 1.7e-26 123.2 134 51.5
PSO832G2395 Papaver somniferum HOM05D003565 ORTHO05D003943 2.9e-26 122.5 149 48.3
RcHm_v2.0_Chr4g0422991 Rosa chinensis HOM05D003565 ORTHO05D003943 6.5e-26 121.3 151 50.3
Cfa015405 Carpinus fangiana HOM05D003565 ORTHO05D003943 8.5e-26 120.9 158 50.0
PSO210G5566 Papaver somniferum HOM05D003565 ORTHO05D003943 1.1e-25 120.6 149 47.7
TWI09G1223 Tripterygium wilfordii HOM05D003565 ORTHO05D003943 1.1e-25 120.6 145 50.3
arahy.Tifrunner.gnm1.ann1.Q570SP Arachis hypogaea HOM05D003565 ORTHO05D003943 1.5e-25 120.2 158 47.5
FAN17G2113 Fragaria x ananassa HOM05D003565 ORTHO05D003943 2.5e-25 119.4 147 49.7
TAR362G0267 Trochodendron aralioides HOM05D003565 ORTHO05D003943 3.2e-25 119.0 155 45.8
FAN12G1574 Fragaria x ananassa HOM05D003565 ORTHO05D003943 9.4e-25 117.5 148 48.6
FvH4_4g18480 Fragaria vesca HOM05D003565 ORTHO05D003943 2.7e-24 115.9 147 48.3
FAN12G0358 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.6e-24 115.5 148 48.0
Oeu064291.1 Olea europaea HOM05D003565 ORTHO05D003943 4.7e-24 115.2 157 46.5
arahy.Tifrunner.gnm1.ann1.VE1P60 Arachis hypogaea HOM05D003565 ORTHO05D003943 6.1e-24 114.8 96 63.5
Actinidia14291 Actinidia chinensis HOM05D003565 ORTHO05D003943 1.8e-23 113.2 149 47.7
Haze_01182 Corylus avellana HOM05D003565 ORTHO05D003943 1.8e-23 113.2 149 51.0
Peaxi162Scf00246g01219 Petunia axillaris HOM05D003565 ORTHO05D003943 1.8e-23 113.2 156 46.2
Ciclev10006409m.g Citrus clementina HOM05D003565 ORTHO05D003943 3.0e-23 112.5 154 44.2
CAN.G261.3 Capsicum annuum HOM05D003565 ORTHO05D003943 5.2e-23 111.7 151 49.0
MELO3C006673.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.2e-23 111.7 153 43.8
CANSAT78G1552 Cannabis sativa HOM05D003565 ORTHO05D003943 6.8e-23 111.3 156 42.9
Cc03_g01690 Coffea canephora HOM05D003565 ORTHO05D003943 8.8e-23 110.9 154 45.5
THA.LOC104820292 Tarenaya hassleriana HOM05D003565 ORTHO05D003943 1.2e-22 110.5 156 44.9
DCAR_027062 Daucus carota HOM05D003565 ORTHO05D003943 1.5e-22 110.2 150 41.3
DCAR_027064 Daucus carota HOM05D003565 ORTHO05D003943 1.5e-22 110.2 150 41.3
Sopen01g028300 Solanum pennellii HOM05D003565 ORTHO05D003943 1.5e-22 110.2 149 43.6
CiPaw.02G081400 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.4e-22 109.0 156 45.5
CiPaw.02G081500 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.4e-22 109.0 156 45.5
PGR004G2879 Punica granatum HOM05D003565 ORTHO05D003943 1.7e-21 106.7 149 41.6
PGSC0003DMG400011334 Solanum tuberosum HOM05D003565 ORTHO05D003943 1.7e-21 106.7 154 44.2
HanXRQChr13g0420001 Helianthus annuus HOM05D003565 ORTHO05D003943 6.3e-21 104.8 148 43.9
ECA240G0767 Erigeron canadensis HOM05D003565 ORTHO05D003943 8.3e-21 104.4 155 43.9
Ciclev10006885m.g Citrus clementina HOM05D003565 ORTHO05D003943 1.4e-20 103.6 145 42.8
Carub.0003s1639 Capsella rubella HOM05D003565 ORTHO05D003943 2.4e-20 102.8 128 47.7
Sed0026730 Sechium edule HOM05D003565 ORTHO05D003943 3.1e-20 102.4 132 44.7
ATR0796G036 Amborella trichopoda HOM05D003565 ORTHO05D003943 4.1e-20 102.1 149 40.3
CiPaw.02G059200 Carya illinoinensis HOM05D003565 ORTHO05D003943 5.4e-20 101.7 151 45.0
Nitab4.5_0000513g0180 Nicotiana tabacum HOM05D003565 ORTHO05D003943 5.4e-20 101.7 159 42.1
PGR004G0277 Punica granatum HOM05D003565 ORTHO05D003943 7.0e-20 101.3 129 45.0
Solyc01g066680.3 Solanum lycopersicum HOM05D003565 ORTHO05D003943 9.1e-20 100.9 137 46.0
PGR004G2171 Punica granatum HOM05D003565 ORTHO05D003943 1.2e-19 100.5 129 45.0
Nitab4.5_0005362g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.6e-19 100.1 152 43.4
Aa31LG8G3780 Aethionema arabicum HOM05D003565 ORTHO05D003943 2.7e-19 99.4 116 44.0
CiPaw.02G058900 Carya illinoinensis HOM05D003565 ORTHO05D003943 3.5e-19 99.0 151 45.0
MELO3C035189.2 Cucumis melo HOM05D003565 ORTHO05D003943 5.9e-19 98.2 158 41.1
PGR004G2038 Punica granatum HOM05D003565 ORTHO05D003943 5.9e-19 98.2 118 44.1
BcaC09g48620 Brassica carinata HOM05D003565 ORTHO05D003943 2.9e-18 95.9 151 43.7
CARHR091910 Cardamine hirsuta HOM05D003565 ORTHO05D003943 3.8e-18 95.5 157 43.9
AL3G29580 Arabidopsis lyrata HOM05D003565 ORTHO05D003943 6.5e-18 94.7 127 44.9
AT3G16660 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.5e-17 92.8 159 39.6
FvH4_4g18430 Fragaria vesca HOM05D003565 ORTHO05D003943 2.5e-17 92.8 143 42.0
Lsat_1_v5_gn_6_95321 Lactuca sativa HOM05D003565 ORTHO05D003943 3.3e-17 92.4 154 39.6
Nitab4.5_0000194g0060 Nicotiana tabacum HOM05D003565 ORTHO05D003943 3.3e-17 92.4 151 43.0
BcaB04g20866 Brassica carinata HOM05D003565 ORTHO05D003943 4.2e-17 92.0 137 40.1
HanXRQChr03g0089351 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-16 90.5 130 42.3
Eucgr.H03941 Eucalyptus grandis HOM05D003565 ORTHO05D003943 2.8e-16 89.4 157 35.7
Cfa015408 Carpinus fangiana HOM05D003565 ORTHO05D003943 3.6e-16 89.0 158 41.8
FAN12G2280 Fragaria x ananassa HOM05D003565 ORTHO05D003943 3.6e-16 89.0 144 41.7
QL06p009884 Quercus lobata HOM05D003565 ORTHO05D003943 4.7e-16 88.6 145 35.9
QL06p009834 Quercus lobata HOM05D003565 ORTHO05D003943 6.1e-16 88.2 154 36.4
Oeu027152.1 Olea europaea HOM05D003565 ORTHO05D003943 1.0e-15 87.4 156 38.5
CiPaw.02G059300 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.8e-15 86.7 135 44.4
CsaV3_UNG044240 Cucumis sativus L. HOM05D003565 ORTHO05D003943 2.3e-15 86.3 128 42.2
QL06p009817 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-15 86.3 154 37.0
Oeu027151.1 Olea europaea HOM05D003565 ORTHO05D003943 8.9e-15 84.3 154 38.3
HanXRQChr03g0088811 Helianthus annuus HOM05D003565 ORTHO05D003943 1.2e-14 84.0 96 46.9
CsaV3_6G023960 Cucumis sativus L. HOM05D000549 ORTHO05D001527 1.5e-14 83.6 124 41.9
HanXRQChr08g0214541 Helianthus annuus HOM05D003565 ORTHO05D003943 1.5e-14 83.6 127 41.7
CiPaw.02G081600 Carya illinoinensis HOM05D003565 ORTHO05D003943 2.0e-14 83.2 125 40.8
AT3G16670 Arabidopsis thaliana HOM05D003565 ORTHO05D003943 2.6e-14 82.8 158 38.6
CARHR150150 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.6e-14 82.8 153 39.9
CsaV3_3G014770 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.4e-14 82.4 136 37.5
Thhalv10021522m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 3.4e-14 82.4 156 37.8
Nitab4.5_0000493g0100 Nicotiana tabacum HOM05D003565 ORTHO05D003943 7.5e-14 81.3 151 41.1
CsaV3_6G024110 Cucumis sativus L. HOM05D000549 ORTHO05D003943 1.7e-13 80.1 133 39.8
Cfa021269 Carpinus fangiana HOM05D003565 ORTHO05D003943 2.8e-13 79.3 155 40.6
HanXRQChr03g0089401 Helianthus annuus HOM05D003565 ORTHO05D003943 6.3e-13 78.2 145 39.3
Nitab4.5_0000194g0050 Nicotiana tabacum HOM05D003565 ORTHO05D003943 6.3e-13 78.2 106 48.1
Nitab4.5_0003949g0040 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.3e-13 77.8 150 39.3
BcaB04g18928 Brassica carinata HOM05D003565 ORTHO05D003943 1.4e-12 77.0 128 36.7
FAN17G0998 Fragaria x ananassa HOM05D003565 ORTHO05D003943 1.4e-12 77.0 148 37.2
HanXRQChr05g0130321 Helianthus annuus HOM05D003565 ORTHO05D003943 1.4e-12 77.0 143 34.3
Nitab4.5_0003949g0030 Nicotiana tabacum HOM05D003565 ORTHO05D003943 1.4e-12 77.0 150 39.3
A01p37230 Brassica napus HOM05D003565 ORTHO05D003943 2.4e-12 76.3 157 36.9
HanXRQChr01g0002181 Helianthus annuus HOM05D003565 ORTHO05D003943 2.4e-12 76.3 142 35.9
QL06p009717 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-12 75.9 109 41.3
QL06p009778 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-12 75.9 109 41.3
QL06p009796 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-12 75.9 109 41.3
QL93p0060_0003 Quercus lobata HOM05D003565 ORTHO05D003943 3.1e-12 75.9 109 41.3
A01p37210 Brassica napus HOM05D003565 ORTHO05D003943 4.1e-12 75.5 157 34.4
DCAR_027061 Daucus carota HOM05D003565 ORTHO05D003943 4.1e-12 75.5 122 36.9
Zm00001eb111390 Zea mays HOM05D003565 ORTHO05D003943 4.1e-12 75.5 114 41.2
HanXRQChr03g0088801 Helianthus annuus HOM05D003565 ORTHO05D003943 5.4e-12 75.1 119 37.0
A03p40060 Brassica napus HOM05D003565 ORTHO05D003943 7.0e-12 74.7 134 37.3
BraA03t13156Z Brassica rapa HOM05D003565 ORTHO05D003943 7.0e-12 74.7 134 37.3
DCAR_022430 Daucus carota HOM05D003565 ORTHO05D003943 7.0e-12 74.7 125 40.8
QL06p009891 Quercus lobata HOM05D003565 ORTHO05D003943 7.0e-12 74.7 145 31.0
Os07g0674400 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 9.2e-12 74.3 146 37.0
QL06p009754 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-11 73.9 109 40.4
QL93p0060_0027 Quercus lobata HOM05D003565 ORTHO05D003943 1.2e-11 73.9 109 40.4
CARHR091920 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-11 73.6 145 38.6
CARHR091930 Cardamine hirsuta HOM05D003565 ORTHO05D003943 1.6e-11 73.6 117 43.6
CARHR150160 Cardamine hirsuta HOM05D003565 ORTHO05D003943 2.0e-11 73.2 117 43.6
Migut.N02472 Erythranthe guttata HOM05D003565 ORTHO05D003943 2.7e-11 72.8 143 32.9
QL06p009664 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-11 72.4 109 39.4
QL06p009790 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-11 72.4 106 40.6
QL06p009948 Quercus lobata HOM05D003565 ORTHO05D003943 3.5e-11 72.4 123 34.1
QL06p009725 Quercus lobata HOM05D003565 ORTHO05D003943 4.5e-11 72.0 112 39.3
FAN12G0988 Fragaria x ananassa HOM05D003565 ORTHO05D003943 7.8e-11 71.2 85 47.1
Carub.0002s1293 Capsella rubella HOM05D003565 ORTHO05D003943 1.0e-10 70.9 154 36.4
QL06p009701 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-10 70.1 109 39.4
QL93p0060_0019 Quercus lobata HOM05D003565 ORTHO05D003943 1.7e-10 70.1 109 39.4
QL06p009739 Quercus lobata HOM05D003565 ORTHO05D003943 2.3e-10 69.7 109 39.4
HanXRQChr03g0089391 Helianthus annuus HOM05D003565 ORTHO05D003943 2.9e-10 69.3 122 36.9
HPP92_006917 Vanilla planifolia HOM05D003565 ORTHO05D003943 3.8e-10 68.9 142 34.5
QL93p0060_0047 Quercus lobata HOM05D003565 ORTHO05D003943 5.0e-10 68.6 109 39.4
Carub.0003s1640 Capsella rubella HOM05D003565 ORTHO05D003943 6.6e-10 68.2 149 34.2
HanXRQChr08g0214531 Helianthus annuus HOM05D003565 ORTHO05D003943 6.6e-10 68.2 140 37.9
Nitab4.5_0000493g0090 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.6e-10 67.8 91 44.0
Oeu026321.1 Olea europaea HOM05D003565 ORTHO05D003943 8.6e-10 67.8 127 40.2
C03p48610 Brassica napus HOM05D003565 ORTHO05D003943 1.9e-09 66.6 134 35.8
DCAR_030517 Daucus carota HOM05D003565 ORTHO05D003943 2.5e-09 66.2 124 36.3
Nitab4.5_0000930g0010 Nicotiana tabacum HOM05D003565 ORTHO05D003943 2.5e-09 66.2 153 39.9
Os07g0674500 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 7.3e-09 64.7 96 43.8
CiPaw.02G059100 Carya illinoinensis HOM05D003565 ORTHO05D003943 1.2e-08 63.9 107 43.9
Zm00001eb016410 Zea mays HOM05D003565 ORTHO05D003943 1.6e-08 63.5 124 39.5
Zm00001eb016390 Zea mays HOM05D003565 ORTHO05D003943 2.1e-08 63.2 101 38.6
BcaC01g03788 Brassica carinata HOM05D003565 ORTHO05D003943 4.7e-08 62.0 134 35.1
Thhalv10021613m.g Eutrema salsugineum HOM05D003565 ORTHO05D003943 4.7e-08 62.0 115 37.4
CsaV3_3G014760 Cucumis sativus L. HOM05D003565 ORTHO05D003943 3.0e-07 59.3 126 34.1
BraA01t03783Z Brassica rapa HOM05D003565 ORTHO05D003943 4.0e-07 58.9 165 33.9
Os03g0342100 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 6.8e-07 58.2 129 32.6
Nitab4.5_0000493g0080 Nicotiana tabacum HOM05D003565 ORTHO05D003943 8.9e-07 57.8 148 35.1
BraA01t03781Z Brassica rapa HOM05D003565 ORTHO05D003943 2.6e-06 56.2 165 30.9
DCAR_030515 Daucus carota HOM05D003565 ORTHO05D003943 2.6e-06 56.2 152 31.6
Hma1.2p1_0078F.1_g040470 Hydrangea macrophylla HOM05D003565 ORTHO05D003943 2.6e-06 56.2 149 32.9
SGA_v2.0_scaffold177G39437 Striga asiatica HOM05D003565 ORTHO05D003943 2.6e-06 56.2 152 30.3
BcaC09g48665 Brassica carinata HOM05D003565 ORTHO05D003943 4.4e-06 55.5 165 31.5
C01p47150 Brassica napus HOM05D003565 ORTHO05D003943 4.4e-06 55.5 165 31.5
Os03g0341600 Oryza sativa ssp. japonica HOM05D003565 ORTHO05D003943 4.4e-06 55.5 126 34.9
BolC1t04684H Brassica oleracea HOM05D003565 ORTHO05D003943 5.8e-06 55.1 166 31.3
Sp3g14950 Schrenkiella parvula HOM05D003565 ORTHO05D003943 7.5e-06 54.7 121 34.7
ECA247G1649 Erigeron canadensis HOM05D023078 ORTHO05D003943 9.8e-06 54.3 165 33.3


User provided reference genes

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