Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G042600 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 2172.5 1082 100.0
Phvul.009G250200 Phaseolus vulgaris HOM05D005069 ORTHO05D006024 0.0e+00 1898.6 1062 88.2
VMungo1309G0850 Vigna mungo HOM05D005069 ORTHO05D006024 0.0e+00 1874.4 1068 86.7
Glyma.15G192400 Glycine max HOM05D005069 ORTHO05D006024 0.0e+00 1839.3 930 98.5
Ca_10630_v3 Cicer arietinum L. HOM05D005069 ORTHO05D006024 0.0e+00 1762.7 1060 81.7
Lj6g0024094 Lotus japonicus HOM05D005069 ORTHO05D006024 0.0e+00 1752.6 1052 81.8
Medtr2g435850 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1720.7 1014 82.3
Medtr2g436170 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1720.7 1014 82.3
TPR.G14183 Trifolium pratense HOM05D005069 ORTHO05D006024 0.0e+00 1714.9 1061 79.3
Psat1g155720 Pisum sativum HOM05D005069 ORTHO05D006024 0.0e+00 1714.5 1062 78.9
Medtr5g020160 Medicago truncatula HOM05D005069 ORTHO05D006024 0.0e+00 1704.9 1034 80.5
arahy.Tifrunner.gnm1.ann1.9CA2Y1 Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1576.2 1066 72.9
arahy.Tifrunner.gnm1.ann1.I5RJVP Arachis hypogaea HOM05D005069 ORTHO05D006024 0.0e+00 1555.8 1066 72.4
QL06p010168 Quercus lobata HOM05D005069 ORTHO05D006024 0.0e+00 1444.1 1057 67.4
Cfa015421 Carpinus fangiana HOM05D005069 ORTHO05D006024 0.0e+00 1408.3 1070 65.0
CiPaw.02G080300 Carya illinoinensis HOM05D005069 ORTHO05D006024 0.0e+00 1407.1 1086 65.3
Prupe.1G132400 Prunus persica HOM05D005069 ORTHO05D006024 0.0e+00 1348.6 1069 63.0
RcHm_v2.0_Chr4g0423171 Rosa chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1328.9 1049 62.7
FAN07G0695 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1307.0 1062 61.4
FAN12G2768 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1300.8 1068 60.8
Duzib151G0715 Durio zibethinus HOM05D005069 ORTHO05D006024 0.0e+00 1294.6 1068 60.8
Haze_01171 Corylus avellana HOM05D005069 ORTHO05D006024 0.0e+00 1278.8 1088 59.7
Atru.chr4.2893 Acer truncatum HOM05D005069 ORTHO05D006024 0.0e+00 1274.6 1080 60.3
GSVIVG01035118001 Vitis vinifera HOM05D005069 ORTHO05D006024 0.0e+00 1272.7 1048 61.5
Actinidia40297 Actinidia chinensis HOM05D005069 ORTHO05D006024 0.0e+00 1250.7 1050 60.3
Ciclev10007186m.g Citrus clementina HOM05D005069 ORTHO05D006024 0.0e+00 1243.8 1073 59.7
Cpa.g.sc50.170 Carica papaya HOM05D005069 ORTHO05D006024 0.0e+00 1243.0 1057 59.2
Potri.007G124900 Populus trichocarpa HOM05D005069 ORTHO05D006024 0.0e+00 1241.9 1065 57.6
Sabra07G0100800 Salix brachista HOM05D005069 ORTHO05D006024 0.0e+00 1241.9 1064 57.4
Gorai.005G061500 Gossypium raimondii HOM05D005069 ORTHO05D006024 0.0e+00 1237.6 1067 57.8
Gohir.A02G050600 Gossypium hirsutum HOM05D005069 ORTHO05D006024 0.0e+00 1231.9 1064 57.7
Lj6C680G7 Lonicera japonica HOM05D005069 ORTHO05D006024 0.0e+00 1229.5 1081 58.2
Eucgr.H03956 Eucalyptus grandis HOM05D005069 ORTHO05D006024 0.0e+00 1224.2 1045 59.5
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 0.0e+00 1221.8 1046 59.0
TWI09G0094 Tripterygium wilfordii HOM05D005069 ORTHO05D006024 0.0e+00 1221.5 1063 59.0
Lalb_Chr15g0086031 Lupinus albus HOM05D005069 ORTHO05D006024 0.0e+00 1209.5 760 79.1
Rhsim04G0224900 Rhododendron simsii HOM05D005069 ORTHO05D006024 0.0e+00 1206.8 1103 55.9
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1197.2 963 61.6
PGR004G1871 Punica granatum HOM05D005069 ORTHO05D006024 0.0e+00 1188.7 1076 56.3
Manes.04G040225 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1183.7 1069 56.9
FAN17G1646 Fragaria x ananassa HOM05D005069 ORTHO05D006024 0.0e+00 1174.1 977 60.7
vmacro08181 Vaccinium macrocarpon HOM05D005069 ORTHO05D006024 0.0e+00 1160.2 1127 53.3
Aqoxy2G02916 Aquilegia oxysepala HOM05D005069 ORTHO05D006024 0.0e+00 1157.9 1069 54.0
CAN.G1639.1 Capsicum annuum HOM05D005069 ORTHO05D006024 0.0e+00 1147.1 1028 56.2
Nitab4.5_0000695g0020 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1146.3 1058 55.1
THA.LOC104818914 Tarenaya hassleriana HOM05D005069 ORTHO05D006024 0.0e+00 1146.0 1040 55.5
Manes.04G046272 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1140.6 1065 54.6
Manes.04G045344 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1138.6 1069 54.3
AL8G22670 Arabidopsis lyrata HOM05D005069 ORTHO05D006024 0.0e+00 1135.2 1065 54.7
AT5G49150 Arabidopsis thaliana HOM05D005069 ORTHO05D006024 0.0e+00 1134.4 1048 54.9
Peaxi162Scf00065g01432 Petunia axillaris HOM05D005069 ORTHO05D006024 0.0e+00 1128.2 1047 55.1
Nitab4.5_0006814g0030 Nicotiana tabacum HOM05D005069 ORTHO05D006024 0.0e+00 1125.9 1093 53.2
PSO170G2573 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1125.2 1051 53.5
Carub.0008s0895 Capsella rubella HOM05D005069 ORTHO05D006024 0.0e+00 1119.0 1055 54.3
BraA02t08774Z Brassica rapa HOM05D005069 ORTHO05D006024 0.0e+00 1102.4 1054 53.3
PSO407G0255 Papaver somniferum HOM05D005069 ORTHO05D006024 0.0e+00 1102.0 1033 53.4
BolC2t11776H Brassica oleracea HOM05D005069 ORTHO05D006024 0.0e+00 1099.3 1034 53.7
Solyc01g066510.3 Solanum lycopersicum HOM05D005069 ORTHO05D006024 0.0e+00 1096.3 1070 52.7
C02p57050 Brassica napus HOM05D007614 ORTHO05D009538 0.0e+00 1095.1 1069 52.6
Aa31LG11G8390 Aethionema arabicum HOM05D005069 ORTHO05D006024 0.0e+00 1094.0 1044 52.9
BcaC03g17701 Brassica carinata HOM05D005069 ORTHO05D006024 0.0e+00 1093.6 1046 53.2
Manes.04G046000 Manihot esculenta HOM05D005069 ORTHO05D006024 0.0e+00 1093.2 1077 53.2
A02p37900 Brassica napus HOM05D005069 ORTHO05D006024 0.0e+00 1092.0 1065 53.5
Thhalv10005444m.g Eutrema salsugineum HOM05D005069 ORTHO05D006024 0.0e+00 1091.6 985 55.0
Migut.G00133 Erythranthe guttata HOM05D005069 ORTHO05D006024 0.0e+00 1078.5 1050 53.0
Dinv29734 Davidia involucrata HOM05D005069 ORTHO05D006024 0.0e+00 1075.1 877 61.2
AUR62032020 Chenopodium quinoa HOM05D005069 ORTHO05D006024 3.0e-311 1072.0 1104 50.2
AUR62018094 Chenopodium quinoa HOM05D005069 ORTHO05D006024 3.3e-310 1068.5 1039 51.5
Cc03_g01590 Coffea canephora HOM05D005069 ORTHO05D006024 1.4e-308 1063.1 954 56.0
DCAR_023295 Daucus carota HOM05D005069 ORTHO05D006024 7.6e-307 1057.4 1065 52.2
SGA_v2.0_scaffold67G22603 Striga asiatica HOM05D005069 ORTHO05D006024 1.7e-303 1046.2 992 53.5
SalBow2G1933 Salvia bowleyana HOM05D005069 ORTHO05D006024 6.9e-300 1034.2 1062 50.3
CANSAT78G0554 Cannabis sativa HOM05D005069 ORTHO05D006024 2.0e-299 1032.7 772 64.6
EL10Ac3g06634 Beta vulgaris HOM05D005069 ORTHO05D006024 1.2e-296 1023.5 1037 49.6
CARHR186440 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.4e-292 1009.2 897 55.7
Ah.00g238040 Amaranthus hybridus HOM05D005069 ORTHO05D006024 1.7e-290 1003.0 1041 48.9
FvH4_4g18570 Fragaria vesca HOM05D005069 ORTHO05D006024 1.0e-287 993.8 773 63.8
Sp2g19500 Schrenkiella parvula HOM05D005069 ORTHO05D006024 1.3e-285 986.9 897 54.7
Nn3g21533 Nelumbo nucifera HOM05D005069 ORTHO05D006024 6.9e-284 981.1 875 57.0
Hund20526 Selenicereus undatus HOM05D005069 ORTHO05D006024 1.0e-279 967.2 1104 46.2
CSS0043552 Camellia sinensis var. sinensis HOM05D005069 ORTHO05D006024 2.6e-275 952.6 886 55.6
Lsat_1_v5_gn_6_96300 Lactuca sativa HOM05D005069 ORTHO05D006024 1.2e-272 943.7 1050 47.0
HPP92_022450 Vanilla planifolia HOM05D005069 ORTHO05D006024 1.8e-271 939.9 1013 48.2
ATR0580G217 Amborella trichopoda HOM05D005069 ORTHO05D006024 2.7e-256 889.4 1040 46.2
MBI15_g07480_MAGBIO Magnolia biondii HOM05D005069 ORTHO05D006024 9.4e-249 864.4 1043 46.7
TAR636G0683 Trochodendron aralioides HOM05D005069 ORTHO05D006024 5.9e-243 845.1 695 60.9
Migut.G00081 Erythranthe guttata HOM05D005069 ORTHO05D006024 2.9e-242 842.8 919 49.1
HanXRQChr03g0089541 Helianthus annuus HOM05D005069 ORTHO05D006024 7.7e-235 818.1 993 43.7
Oeu035688.1 Olea europaea HOM05D005069 ORTHO05D006024 1.3e-226 790.8 699 57.2
Zm00001eb099800 Zea mays HOM05D005069 ORTHO05D006024 1.2e-222 777.7 1040 40.4
Manes.04G046718 Manihot esculenta HOM05D005069 ORTHO05D006024 1.8e-220 770.4 650 58.8
Sopen01g028200 Solanum pennellii HOM05D005069 ORTHO05D006024 7.8e-219 765.0 738 53.0
Hma1.2p1_0078F.1_g040620 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.6e-211 739.2 547 66.0
ECA240G4151 Erigeron canadensis HOM05D005069 ORTHO05D006024 4.4e-206 722.6 1033 40.7
Sc13g0003270 Simmondsia chinensis HOM05D005069 ORTHO05D006024 9.5e-201 704.9 605 57.5
CDE02G3967 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 3.2e-172 610.1 647 48.2
Thecc.04G288100 Theobroma cacao HOM05D005069 ORTHO05D006024 1.2e-166 591.7 483 60.0
HanXRQChr03g0089561 Helianthus annuus HOM05D005069 ORTHO05D006024 1.5e-158 564.7 597 48.1
Thecc.04G288200 Theobroma cacao HOM05D005069 ORTHO05D006024 6.5e-125 453.0 350 63.4
TAR636G0082 Trochodendron aralioides HOM05D005069 ORTHO05D006024 1.6e-115 421.8 314 65.6
SHI26096 Sapria himalayana HOM05D005069 ORTHO05D006024 2.1e-107 394.8 383 51.2
Sc13g0003280 Simmondsia chinensis HOM05D005069 ORTHO05D006024 1.0e-101 375.9 345 54.2
TPR.G29612 Trifolium pratense HOM05D005069 ORTHO05D006024 2.0e-89 335.1 208 75.5
SMO174G0176 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 2.2e-88 331.6 1033 27.9
Lalb_Chr15g0086041 Lupinus albus HOM05D005069 ORTHO05D006024 7.3e-84 316.6 192 80.7
Manes.04G046727 Manihot esculenta HOM05D005069 ORTHO05D006024 4.3e-76 290.8 219 63.5
Gohir.D02G055533 Gossypium hirsutum HOM05D005069 ORTHO05D006024 3.6e-75 287.7 219 63.0
SHI26090 Sapria himalayana HOM05D005069 ORTHO05D006024 6.0e-70 270.4 226 55.8
HanXRQChr03g0089551 Helianthus annuus HOM05D005069 ORTHO05D006024 2.1e-67 261.9 318 44.7
Sabra07G0101000 Salix brachista HOM05D005069 ORTHO05D006024 8.7e-61 240.0 260 45.0
Gohir.D02G055566 Gossypium hirsutum HOM05D005069 ORTHO05D006024 9.3e-55 219.9 179 59.8
Lalb_Chr15g0086021 Lupinus albus HOM05D005069 ORTHO05D006024 7.9e-54 216.9 131 78.6
AagrBONN_evm.TU.Sc2ySwM_340.311 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.9e-52 212.2 916 23.7
Hma1.2p1_1659F.1_g296120 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 2.1e-51 208.8 179 56.4
SHI34756 Sapria himalayana HOM05D005069 ORTHO05D006024 1.1e-50 206.5 347 36.9
Hma1.2p1_0139F.1_g063315 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 4.0e-50 204.5 179 55.9
Hma1.2p1_0139F.1_g063320 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 5.8e-49 200.7 179 54.7
Os09g0424701 Oryza sativa ssp. japonica HOM05D005069 ORTHO05D006024 2.9e-40 171.8 206 40.8
SHI26092 Sapria himalayana HOM05D005069 ORTHO05D006024 1.0e-37 163.3 131 63.4
CDE02G3730 Ceratophyllum demersum HOM05D005069 ORTHO05D006024 6.7e-37 160.6 179 45.3
SHI26089 Sapria himalayana HOM05D005069 ORTHO05D006024 1.5e-36 159.5 125 61.6
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.1e-34 153.3 130 54.6
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.6e-33 148.7 134 54.5
AagrBONN_evm.TU.Sc2ySwM_228.988 Anthoceros agrestis HOM05D005069 ORTHO05D006024 6.5e-32 144.1 1004 21.9
Lsat_1_v5_gn_8_152101 Lactuca sativa HOM05D005069 ORTHO05D006024 9.4e-31 140.2 154 44.8
TPR.G9115 Trifolium pratense HOM05D005069 ORTHO05D006024 6.7e-29 134.0 84 76.2
Mapoly0125s0024 Marchantia polymorpha HOM05D005069 ORTHO05D006024 3.7e-27 128.3 492 21.5
SMO347G0277 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.4e-26 126.3 419 26.7
BcaC03g17698 Brassica carinata HOM05D005069 ORTHO05D006024 2.6e-25 122.1 115 51.3
Hma1.2p1_0078F.1_g040610 Hydrangea macrophylla HOM05D005069 ORTHO05D006024 1.3e-24 119.8 140 47.9
TPR.G8658 Trifolium pratense HOM05D005069 ORTHO05D006024 1.7e-24 119.4 302 31.1
Lsat_1_v5_gn_9_29220 Lactuca sativa HOM05D003976 ORTHO05D006024 6.3e-19 100.9 81 55.6
Lsat_1_v5_gn_2_33340 Lactuca sativa HOM05D005069 ORTHO05D006024 1.8e-18 99.4 81 53.1
SMO109G0005 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 1.2e-17 96.7 344 24.7
AagrBONN_evm.TU.Sc2ySwM_344.2936 Anthoceros agrestis HOM05D005069 ORTHO05D006024 4.5e-17 94.7 937 20.5
BcaC06g30714 Brassica carinata HOM05D005069 ORTHO05D006024 6.5e-16 90.9 95 45.3
AagrBONN_evm.TU.Sc2ySwM_340.310 Anthoceros agrestis HOM05D005069 ORTHO05D006024 1.1e-15 90.1 296 25.7
SMO111G0104 Selaginella moellendorffii HOM05D005069 ORTHO05D006024 9.4e-15 87.0 488 21.1
Mapoly0125s0023 Marchantia polymorpha HOM05D005069 ORTHO05D006024 4.7e-14 84.7 382 23.3
Glyma.09G140050 Glycine max HOM05D005069 ORTHO05D006024 1.5e-12 79.7 45 93.3
BcaC05g26383 Brassica carinata HOM05D005069 ORTHO05D006024 4.4e-12 78.2 58 56.9
C05p24130 Brassica napus HOM05D005069 ORTHO05D006024 1.3e-11 76.6 58 55.2
AagrBONN_evm.TU.Sc2ySwM_340.307 Anthoceros agrestis HOM05D005069 ORTHO05D006024 2.2e-11 75.9 224 26.3
CARHR286020 Cardamine hirsuta HOM05D005069 ORTHO05D006024 1.1e-10 73.6 100 41.0
CARHR285990 Cardamine hirsuta HOM05D005069 ORTHO05D006024 2.9e-08 65.5 57 47.4
Lsat_1_v5_gn_4_4660 Lactuca sativa HOM05D003976 ORTHO05D004711 8.0e-06 57.4 83 38.6


User provided reference genes

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