Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G039500 Glycine max HOM05D005143 ORTHO05D006404 6.3e-146 520.8 267 100.0
Glyma.15G144700 Glycine max HOM05D005143 ORTHO05D006404 1.8e-137 492.7 262 95.8
VMungo1309G2864 Vigna mungo HOM05D005143 ORTHO05D006404 5.4e-129 464.5 263 89.4
Phvul.009G253600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 2.7e-128 462.2 263 89.4
TPR.G27704 Trifolium pratense HOM05D005143 ORTHO05D006404 5.0e-119 431.4 264 84.1
Medtr2g034880 Medicago truncatula HOM05D005143 ORTHO05D006404 1.9e-118 429.5 265 84.5
Lj6g0005650 Lotus japonicus HOM05D005143 ORTHO05D006404 2.1e-117 426.0 265 83.4
Psat1g158200 Pisum sativum HOM05D005143 ORTHO05D006404 5.7e-115 417.9 265 82.3
Ca_01881_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.7e-114 416.4 269 80.7
Ca_01895_v3 Cicer arietinum L. HOM05D005143 ORTHO05D006404 1.7e-114 416.4 269 80.7
Lalb_Chr20g0121021 Lupinus albus HOM05D005143 ORTHO05D006404 1.7e-111 406.4 267 78.3
arahy.Tifrunner.gnm1.ann1.UTG064 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.1e-108 395.6 272 75.0
Lalb_Chr18g0058921 Lupinus albus HOM05D005143 ORTHO05D006404 1.7e-106 389.8 268 75.7
Phvul.003G110600 Phaseolus vulgaris HOM05D005143 ORTHO05D006404 4.7e-101 371.7 263 74.1
Cfa015478 Carpinus fangiana HOM05D005143 ORTHO05D006404 1.8e-100 369.8 267 72.7
Glyma.17G031200 Glycine max HOM05D005143 ORTHO05D006404 4.4e-99 365.2 263 72.6
QL06p011304 Quercus lobata HOM05D005143 ORTHO05D006404 1.7e-98 363.2 267 70.4
VMungo1215G3234 Vigna mungo HOM05D005143 ORTHO05D006404 4.9e-98 361.7 263 72.2
Haze_01089 Corylus avellana HOM05D005143 ORTHO05D006404 1.1e-94 350.5 266 71.1
Potri.010G140400 Populus trichocarpa HOM05D005143 ORTHO05D006404 5.6e-94 348.2 262 66.4
Sabra10G0108500 Salix brachista HOM05D005143 ORTHO05D006404 4.0e-92 342.0 262 64.9
TPR.G27702 Trifolium pratense HOM05D005143 ORTHO05D006404 5.2e-92 341.7 264 72.3
CiPaw.01G142400 Carya illinoinensis HOM05D005143 ORTHO05D006404 1.2e-91 340.5 264 68.2
Manes.15G007000 Manihot esculenta HOM05D005143 ORTHO05D006404 9.9e-91 337.4 264 67.0
Dinv02072 Davidia involucrata HOM05D005143 ORTHO05D006404 2.9e-90 335.9 260 67.3
Dinv44320 Davidia involucrata HOM05D005143 ORTHO05D006404 3.7e-90 335.5 246 71.1
Ciclev10007083m.g Citrus clementina HOM05D005143 ORTHO05D006404 8.4e-90 334.3 250 69.6
TWI09G1317 Tripterygium wilfordii HOM05D005143 ORTHO05D006404 1.1e-89 334.0 269 66.2
Medtr2g034890 Medicago truncatula HOM05D005143 ORTHO05D006404 1.9e-89 333.2 245 74.3
Thecc.04G294800 Theobroma cacao HOM05D005143 ORTHO05D006404 9.2e-89 330.9 250 70.0
FvH4_4g19280 Fragaria vesca HOM05D005143 ORTHO05D006404 1.6e-88 330.1 253 68.8
Duzib151G0017 Durio zibethinus HOM05D005143 ORTHO05D006404 3.5e-88 328.9 268 64.6
Sabra08G0082500 Salix brachista HOM05D005143 ORTHO05D006404 3.5e-88 328.9 248 66.9
COL.COLO4_34676 Corchorus olitorius HOM05D005143 ORTHO05D006404 4.6e-88 328.6 252 67.9
FAN12G3988 Fragaria x ananassa HOM05D005143 ORTHO05D006404 6.0e-88 328.2 253 68.4
Hma1.2p1_0013F.1_g008930 Hydrangea macrophylla HOM05D005143 ORTHO05D006404 3.0e-87 325.9 257 66.5
Potri.008G108900 Populus trichocarpa HOM05D005143 ORTHO05D006404 6.6e-87 324.7 242 67.8
Potri.T170901 Populus trichocarpa HOM05D005143 ORTHO05D006404 6.6e-87 324.7 242 67.8
Atru.chr4.2951 Acer truncatum HOM05D005143 ORTHO05D006404 8.6e-87 324.3 264 65.5
RcHm_v2.0_Chr4g0424271 Rosa chinensis HOM05D005143 ORTHO05D006404 4.3e-86 322.0 253 66.8
Prupe.1G125800 Prunus persica HOM05D005143 ORTHO05D006404 1.6e-85 320.1 251 68.5
Actinidia40351 Actinidia chinensis HOM05D005143 ORTHO05D006404 2.8e-85 319.3 265 62.6
CiPaw.02G077100 Carya illinoinensis HOM05D005143 ORTHO05D006404 2.8e-85 319.3 256 68.4
GSVIVG01035046001 Vitis vinifera HOM05D005143 ORTHO05D006404 1.1e-84 317.4 258 64.0
Gohir.D10G175100 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.4e-84 317.0 266 62.0
Gorai.011G195900 Gossypium raimondii HOM05D005143 ORTHO05D006404 5.2e-84 315.1 266 62.0
Lj6A685T16 Lonicera japonica HOM05D005143 ORTHO05D006404 5.2e-84 315.1 265 63.8
Gohir.A10G168900 Gossypium hirsutum HOM05D005143 ORTHO05D006404 1.2e-83 313.9 266 61.7
CSS0004405 Camellia sinensis var. sinensis HOM05D005143 ORTHO05D006404 1.5e-83 313.5 266 63.9
MD13G1158800 Malus domestica HOM05D005143 ORTHO05D006404 7.6e-83 311.2 268 62.3
Actinidia15583 Actinidia chinensis HOM05D005143 ORTHO05D006404 9.9e-83 310.8 265 60.8
MD16G1159000 Malus domestica HOM05D005143 ORTHO05D006404 6.4e-82 308.1 251 66.1
PGR031G1222 Punica granatum HOM05D005143 ORTHO05D006404 6.4e-82 308.1 252 64.3
Duzib052G1152 Durio zibethinus HOM05D005143 ORTHO05D006404 1.4e-81 307.0 242 65.7
vmacro08077 Vaccinium macrocarpon HOM05D005143 ORTHO05D006404 5.4e-81 305.1 267 59.2
TAR362G0369 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.2e-80 303.9 244 63.9
arahy.Tifrunner.gnm1.ann1.PXPP98 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.3e-79 300.4 206 74.8
BcaC03g17714 Brassica carinata HOM05D005143 ORTHO05D006404 3.9e-79 298.9 259 63.7
BolC2t11792H Brassica oleracea HOM05D005143 ORTHO05D006404 3.9e-79 298.9 259 63.7
A02p38010 Brassica napus HOM05D005143 ORTHO05D006404 5.1e-79 298.5 259 63.7
BraA02t08785Z Brassica rapa HOM05D005143 ORTHO05D006404 6.6e-79 298.1 239 66.9
C02p57210 Brassica napus HOM05D005143 ORTHO05D006404 1.1e-78 297.4 259 63.3
Sed0010751 Sechium edule HOM05D005143 ORTHO05D006404 1.5e-78 297.0 248 60.9
BcaB07g34148 Brassica carinata HOM05D005143 ORTHO05D006404 2.5e-78 296.2 239 66.5
Cc03_g01170 Coffea canephora HOM05D005143 ORTHO05D006404 4.3e-78 295.4 258 61.6
ClCG05G006400 Citrullus lanatus HOM05D005143 ORTHO05D006404 2.1e-77 293.1 250 63.2
AL8G22960 Arabidopsis lyrata HOM05D005143 ORTHO05D006404 3.6e-77 292.4 253 63.6
PSO210G3751 Papaver somniferum HOM05D005143 ORTHO05D006404 1.1e-76 290.8 242 63.2
CARHR182240 Cardamine hirsuta HOM05D005143 ORTHO05D006404 1.8e-76 290.0 243 63.4
CsaV3_3G015020 Cucumis sativus L. HOM05D005143 ORTHO05D006404 3.1e-76 289.3 250 61.6
PSO761G0512 Papaver somniferum HOM05D005143 ORTHO05D006404 3.1e-76 289.3 250 60.8
Sp2g19670 Schrenkiella parvula HOM05D005143 ORTHO05D006404 3.1e-76 289.3 239 64.9
BolC7t44512H Brassica oleracea HOM05D005143 ORTHO05D006404 4.0e-76 288.9 238 64.3
Thhalv10005363m.g Eutrema salsugineum HOM05D005143 ORTHO05D006404 5.3e-76 288.5 239 64.4
Sopen01g026590 Solanum pennellii HOM05D005143 ORTHO05D006404 5.3e-76 288.5 247 61.9
EL10Ac3g04926 Beta vulgaris HOM05D005143 ORTHO05D006404 9.0e-76 287.7 248 61.3
CANSAT78G1129 Cannabis sativa HOM05D005143 ORTHO05D006404 9.0e-76 287.7 242 63.2
AT5G49320 Arabidopsis thaliana HOM05D005143 ORTHO05D006404 2.0e-75 286.6 254 63.0
C07p39840 Brassica napus HOM05D005143 ORTHO05D006404 2.0e-75 286.6 238 63.9
Carub.0008s0919 Capsella rubella HOM05D005143 ORTHO05D006404 2.6e-75 286.2 252 62.7
PGSC0003DMG400014988 Solanum tuberosum HOM05D005143 ORTHO05D006404 2.6e-75 286.2 247 61.5
Aa31LG11G7840 Aethionema arabicum HOM05D005143 ORTHO05D006404 5.8e-75 285.0 262 59.9
FAN07G0192 Fragaria x ananassa HOM05D005143 ORTHO05D006404 5.8e-75 285.0 210 70.5
THA.LOC104818896 Tarenaya hassleriana HOM05D005143 ORTHO05D006404 1.7e-74 283.5 237 60.3
Cpa.g.sc9.99 Carica papaya HOM05D005143 ORTHO05D006404 2.2e-74 283.1 253 59.3
MELO3C006698.2 Cucumis melo HOM05D005143 ORTHO05D006404 2.2e-74 283.1 249 60.6
CAN.G1016.6 Capsicum annuum HOM05D005143 ORTHO05D006404 3.8e-74 282.3 246 61.4
BcaNung02596 Brassica carinata HOM05D005143 ORTHO05D006404 1.1e-73 280.8 238 63.4
Aqoxy2G02819 Aquilegia oxysepala HOM05D005143 ORTHO05D006404 1.9e-73 280.0 247 59.1
Solyc01g060450.3 Solanum lycopersicum HOM05D005143 ORTHO05D006404 7.1e-73 278.1 247 59.9
MSTRG.21781 Avicennia marina HOM05D005143 ORTHO05D006404 9.3e-73 277.7 265 56.6
Eucgr.A00195 Eucalyptus grandis HOM05D005143 ORTHO05D006404 3.5e-72 275.8 246 62.6
DCAR_030483 Daucus carota HOM05D005143 ORTHO05D006404 4.6e-72 275.4 250 57.2
Lsat_1_v5_gn_6_115260 Lactuca sativa HOM05D005143 ORTHO05D006404 7.9e-72 274.6 245 59.2
Nitab4.5_0000169g0050 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.0e-71 274.2 245 60.0
Oeu016479.2 Olea europaea HOM05D005143 ORTHO05D006404 1.0e-71 274.2 241 61.0
Nitab4.5_0001695g0020 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.3e-71 273.9 245 60.0
SalBow5G4838 Salvia bowleyana HOM05D005143 ORTHO05D006404 1.3e-71 273.9 225 61.8
DCAR_002501 Daucus carota HOM05D005143 ORTHO05D006404 3.0e-71 272.7 257 58.0
ECA246G2788 Erigeron canadensis HOM05D005143 ORTHO05D006404 3.9e-71 272.3 250 59.6
SGA_v2.0_scaffold119G32680 Striga asiatica HOM05D005143 ORTHO05D006404 1.5e-70 270.4 225 60.0
AUR62035066 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.5e-70 269.6 241 59.3
Migut.N00060 Erythranthe guttata HOM05D005143 ORTHO05D006404 3.3e-70 269.2 268 56.0
Lalb_Chr12g0200981 Lupinus albus HOM05D005143 ORTHO05D006404 9.6e-70 267.7 247 60.7
arahy.Tifrunner.gnm1.ann1.W9GTE1 Arachis hypogaea HOM05D005143 ORTHO05D006404 3.6e-69 265.8 243 63.4
Ah.04g154920 Amaranthus hybridus HOM05D005143 ORTHO05D006404 1.4e-68 263.8 243 58.8
arahy.Tifrunner.gnm1.ann1.RF9CFS Arachis hypogaea HOM05D005143 ORTHO05D006404 1.8e-68 263.5 243 63.0
Sc25g0003440 Simmondsia chinensis HOM05D005143 ORTHO05D006404 4.0e-68 262.3 229 61.1
Sabra08G0082600 Salix brachista HOM05D005143 ORTHO05D006404 6.9e-68 261.5 241 56.8
Nn3g21616 Nelumbo nucifera HOM05D005143 ORTHO05D006404 1.4e-65 253.8 227 60.8
Hund02954 Selenicereus undatus HOM05D005143 ORTHO05D006404 7.1e-65 251.5 270 53.3
Peaxi162Scf00065g00033 Petunia axillaris HOM05D005143 ORTHO05D006404 1.1e-62 244.2 245 55.1
MBI19_g29991_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D006404 1.5e-62 243.8 245 55.1
FAN12G2949 Fragaria x ananassa HOM05D005143 ORTHO05D006404 2.2e-58 229.9 202 62.4
HanXRQChr03g0093441 Helianthus annuus HOM05D005143 ORTHO05D006404 7.1e-57 224.9 243 52.3
Rhsim04G0232200 Rhododendron simsii HOM05D005143 ORTHO05D006404 1.5e-54 217.2 261 49.8
SGA_v2.0_scaffold91G28048 Striga asiatica HOM05D005143 ORTHO05D006404 1.3e-53 214.2 242 52.1
CDE11G0634 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 1.6e-53 213.8 233 49.4
TAR633G2465 Trochodendron aralioides HOM05D005143 ORTHO05D006404 1.4e-49 200.7 155 65.2
Carub.0008s0727 Capsella rubella HOM05D005143 ORTHO05D006404 4.6e-48 195.7 239 51.5
HPP92_001064 Vanilla planifolia HOM05D005143 ORTHO05D006404 6.7e-47 191.8 232 47.0
Oeu006437.1 Olea europaea HOM05D005143 ORTHO05D006404 4.2e-41 172.6 134 64.2
Zm00001eb127640 Zea mays HOM05D005143 ORTHO05D006404 9.7e-38 161.4 210 44.3
Nitab4.5_0008735g0010 Nicotiana tabacum HOM05D005143 ORTHO05D006404 1.1e-36 157.9 181 54.7
CDE05G0725 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 3.1e-36 156.4 177 48.0
SEGI_27691 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 6.9e-36 155.2 230 39.6
Nitab4.5_0000531g0070 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.6e-35 153.3 265 41.9
AUR62016151 Chenopodium quinoa HOM05D005143 ORTHO05D006404 2.2e-34 150.2 140 57.9
Os01g0253400 Oryza sativa ssp. japonica HOM05D005143 ORTHO05D006404 2.2e-34 150.2 220 40.9
AUR62043573 Chenopodium quinoa HOM05D005143 ORTHO05D006404 1.1e-33 147.9 116 61.2
SEGI_03781 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.2e-33 146.0 230 38.3
SEGI_36016 Sequoiadendron giganteum HOM05D005143 ORTHO05D006404 4.2e-33 146.0 236 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1032 Anthoceros agrestis HOM05D005143 ORTHO05D006404 2.7e-32 143.3 230 37.4
Hund11951 Selenicereus undatus HOM05D005143 ORTHO05D006404 5.7e-30 135.6 150 48.7
ATR0706G251 Amborella trichopoda HOM05D005143 ORTHO05D006404 9.7e-30 134.8 236 36.9
Nitab4.5_0005463g0090 Nicotiana tabacum HOM05D005143 ORTHO05D006404 2.5e-25 120.2 157 46.5
arahy.Tifrunner.gnm1.ann1.T63ME6 Arachis hypogaea HOM05D005143 ORTHO05D006404 1.6e-16 90.9 77 64.9
Lj3C827T17 Lonicera japonica HOM05D005143 ORTHO05D006404 1.0e-15 88.2 83 55.4
CDE05G1990 Ceratophyllum demersum HOM05D005143 ORTHO05D006404 8.8e-15 85.1 186 31.7
A06p38430 Brassica napus HOM05D005143 ORTHO05D006404 6.3e-13 79.0 74 62.2
BraA06t26757Z Brassica rapa HOM05D005143 ORTHO05D006404 6.3e-13 79.0 74 62.2
arahy.Tifrunner.gnm1.ann1.A1K99E Arachis hypogaea HOM05D005143 ORTHO05D019760 3.6e-08 63.2 50 68.0
arahy.Tifrunner.gnm1.ann1.I4LEPW Arachis hypogaea HOM05D005143 ORTHO05D019760 6.1e-08 62.4 51 68.6
MBI09_g03808_MAGBIO Magnolia biondii HOM05D005143 ORTHO05D000022 6.1e-08 62.4 92 40.2
SMO118G0365 Selaginella moellendorffii HOM05D005143 ORTHO05D006404 1.4e-07 61.2 146 28.8


User provided reference genes

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