Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G035300 Glycine max HOM05D005046 ORTHO05D006194 7.8e-50 200.3 111 100.0
Phvul.006G118400 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.6e-47 192.6 111 96.4
VMungo0540G1157 Vigna mungo HOM05D005046 ORTHO05D006194 1.6e-47 192.6 111 96.4
Glyma.15G139900 Glycine max HOM05D005046 ORTHO05D006194 4.7e-47 191.0 111 95.5
Medtr2g034010 Medicago truncatula HOM05D005046 ORTHO05D006194 2.6e-45 185.3 111 91.9
Lalb_Chr18g0058661 Lupinus albus HOM05D005046 ORTHO05D006194 3.4e-45 184.9 111 91.9
TPR.G13743 Trifolium pratense HOM05D005046 ORTHO05D006194 2.2e-44 182.2 111 90.1
Psat1g160840 Pisum sativum HOM05D005046 ORTHO05D006194 2.9e-44 181.8 111 90.1
Lj6g0015111 Lotus japonicus HOM05D005046 ORTHO05D006194 4.9e-44 181.0 111 91.0
Lalb_Chr20g0120821 Lupinus albus HOM05D005046 ORTHO05D006194 8.4e-44 180.3 111 89.2
MD13G1153200 Malus domestica HOM05D005046 ORTHO05D006194 1.1e-43 179.9 111 90.1
arahy.Tifrunner.gnm1.ann1.4F0N5D Arachis hypogaea HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 89.2
arahy.Tifrunner.gnm1.ann1.KUZ2VC Arachis hypogaea HOM05D005046 ORTHO05D006194 2.4e-43 178.7 111 89.2
Potri.010G146100 Populus trichocarpa HOM05D005046 ORTHO05D006194 2.4e-43 178.7 112 89.3
HanXRQChr11g0353491 Helianthus annuus HOM05D005046 ORTHO05D006194 7.1e-43 177.2 110 88.2
Ca_00977_v3 Cicer arietinum L. HOM05D005046 ORTHO05D006194 9.3e-43 176.8 111 88.3
Sabra10G0112600 Salix brachista HOM05D005046 ORTHO05D006194 1.2e-42 176.4 112 88.4
MD16G1153600 Malus domestica HOM05D005046 ORTHO05D006194 1.6e-42 176.0 109 89.9
Manes.15G000300 Manihot esculenta HOM05D005046 ORTHO05D006194 1.6e-42 176.0 112 89.3
CSS0005662 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 87.4
CSS0011224 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 87.4
CSS0039452 Camellia sinensis var. sinensis HOM05D005046 ORTHO05D006194 2.7e-42 175.3 111 87.4
MELO3C021266.2 Cucumis melo HOM05D005046 ORTHO05D006194 3.5e-42 174.9 111 86.5
Prupe.1G116800 Prunus persica HOM05D005046 ORTHO05D006194 6.0e-42 174.1 112 89.3
Glyma.17G033800 Glycine max HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 87.4
TWI73G0015 Tripterygium wilfordii HOM05D005046 ORTHO05D006194 7.8e-42 173.7 111 88.3
Phvul.003G114500 Phaseolus vulgaris HOM05D005046 ORTHO05D006194 1.0e-41 173.3 111 86.5
VMungo1215G0235 Vigna mungo HOM05D005046 ORTHO05D006194 1.0e-41 173.3 111 86.5
Lsat_1_v5_gn_1_41381 Lactuca sativa HOM05D005046 ORTHO05D006194 1.3e-41 172.9 110 86.4
CsaV3_6G028590 Cucumis sativus L. HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 85.6
Nn3g21734 Nelumbo nucifera HOM05D005046 ORTHO05D006194 3.0e-41 171.8 111 88.3
Glyma.07G239500 Glycine max HOM05D005046 ORTHO05D006194 3.9e-41 171.4 111 87.4
SGA_v2.0_scaffold104G30073 Striga asiatica HOM05D005046 ORTHO05D006194 5.1e-41 171.0 111 85.6
Dinv44282 Davidia involucrata HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 86.5
Sed0009015 Sechium edule HOM05D005046 ORTHO05D006194 6.6e-41 170.6 109 83.5
Sed0022816 Sechium edule HOM05D005046 ORTHO05D006194 6.6e-41 170.6 111 85.6
Gohir.A02G054900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 8.7e-41 170.2 111 84.7
GSVIVG01034987001 Vitis vinifera HOM05D005046 ORTHO05D006194 8.7e-41 170.2 111 86.5
MSTRG.10153 Avicennia marina HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 87.4
COL.COLO4_34610 Corchorus olitorius HOM05D005046 ORTHO05D006194 1.5e-40 169.5 111 84.7
Dinv15163 Davidia involucrata HOM05D005046 ORTHO05D006194 1.9e-40 169.1 111 85.6
Gorai.005G067500 Gossypium raimondii HOM05D005046 ORTHO05D006194 1.9e-40 169.1 111 83.8
Eucgr.H04047 Eucalyptus grandis HOM05D005046 ORTHO05D006194 2.5e-40 168.7 112 86.6
Cfa015310 Carpinus fangiana HOM05D005046 ORTHO05D006194 3.3e-40 168.3 112 85.7
TAR636G1364 Trochodendron aralioides HOM05D005046 ORTHO05D006194 3.3e-40 168.3 111 85.6
Gohir.D01G023544 Gossypium hirsutum HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 83.8
Gorai.002G030300 Gossypium raimondii HOM05D005046 ORTHO05D006194 4.3e-40 167.9 111 83.8
Aqoxy5G02541 Aquilegia oxysepala HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 82.9
Lj6A691T78 Lonicera japonica HOM05D005046 ORTHO05D006194 5.6e-40 167.5 111 84.7
MSTRG.24823 Avicennia marina HOM05D005046 ORTHO05D006194 7.3e-40 167.2 111 83.8
PGR004G2877 Punica granatum HOM05D005046 ORTHO05D006194 7.3e-40 167.2 112 84.8
Duzib212G1042 Durio zibethinus HOM05D005046 ORTHO05D006194 9.6e-40 166.8 111 83.8
QL05p065557 Quercus lobata HOM05D005046 ORTHO05D006194 9.6e-40 166.8 108 87.0
Actinidia14256 Actinidia chinensis HOM05D005046 ORTHO05D006194 1.3e-39 166.4 111 82.9
Migut.G00065 Erythranthe guttata HOM05D005046 ORTHO05D006194 1.3e-39 166.4 111 83.8
Gohir.A01G034600 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.6e-39 166.0 111 82.0
MBI18_g37558_MAGBIO Magnolia biondii HOM05D005046 ORTHO05D006194 1.6e-39 166.0 133 73.7
PGSC0003DMG400004620 Solanum tuberosum HOM05D005046 ORTHO05D006194 1.6e-39 166.0 111 83.8
Ciclev10006264m.g Citrus clementina HOM05D005046 ORTHO05D006194 2.1e-39 165.6 112 85.7
Rhsim04G0239300 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.1e-39 165.6 112 82.1
SalBow5G2652 Salvia bowleyana HOM05D005046 ORTHO05D006194 2.8e-39 165.2 111 82.9
Solyc12g099240.2 Solanum lycopersicum HOM05D005046 ORTHO05D006194 2.8e-39 165.2 111 82.0
Sopen12g033920 Solanum pennellii HOM05D005046 ORTHO05D006194 2.8e-39 165.2 111 82.0
CANSAT78G2375 Cannabis sativa HOM05D005046 ORTHO05D006194 3.6e-39 164.9 113 83.2
Thecc.04G301400 Theobroma cacao HOM05D005046 ORTHO05D006194 4.8e-39 164.5 111 82.9
Duzib052G0826 Durio zibethinus HOM05D005046 ORTHO05D006194 6.2e-39 164.1 111 82.0
Oeu001169.1 Olea europaea HOM05D005046 ORTHO05D006194 1.8e-38 162.5 104 87.5
Actinidia18456 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.4e-38 162.2 111 82.9
Actinidia40381 Actinidia chinensis HOM05D005046 ORTHO05D006194 2.4e-38 162.2 111 82.9
FvH4_4g19820 Fragaria vesca HOM05D005046 ORTHO05D006194 2.4e-38 162.2 112 83.0
FAN07G0875 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.4e-38 162.2 112 83.0
FAN12G2964 Fragaria x ananassa HOM05D005046 ORTHO05D006194 2.4e-38 162.2 112 83.0
CiPaw.01G138200 Carya illinoinensis HOM05D005046 ORTHO05D006194 3.1e-38 161.8 112 83.0
ClCG06G004560 Citrullus lanatus HOM05D005046 ORTHO05D006194 3.1e-38 161.8 127 75.6
HPP92_016092 Vanilla planifolia HOM05D005046 ORTHO05D006194 3.1e-38 161.8 111 83.8
vmacro08042 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 4.0e-38 161.4 112 81.2
RcHm_v2.0_Chr4g0425361 Rosa chinensis HOM05D005046 ORTHO05D006194 6.9e-38 160.6 112 82.1
CiPaw.02G074700 Carya illinoinensis HOM05D005046 ORTHO05D006194 9.0e-38 160.2 112 81.2
Haze_01302 Corylus avellana HOM05D005046 ORTHO05D006194 9.0e-38 160.2 112 83.9
CAN.G484.64 Capsicum annuum HOM05D005046 ORTHO05D006194 1.2e-37 159.8 111 82.9
CDE02G0992 Ceratophyllum demersum HOM05D005046 ORTHO05D006194 2.6e-37 158.7 111 78.4
Rhsim02G0003600 Rhododendron simsii HOM05D005046 ORTHO05D006194 2.6e-37 158.7 110 83.6
Peaxi162Scf00228g00326 Petunia axillaris HOM05D005046 ORTHO05D006194 5.8e-37 157.5 111 80.2
PSO210G4010 Papaver somniferum HOM05D005046 ORTHO05D006194 9.9e-37 156.8 112 78.6
PSO761G0203 Papaver somniferum HOM05D005046 ORTHO05D006194 9.9e-37 156.8 112 78.6
BNapus_Darmor_BZH_scaffold_118p00040 Brassica napus HOM05D005046 ORTHO05D006194 1.3e-36 156.4 110 80.9
Potri.008G105000 Populus trichocarpa HOM05D005046 ORTHO05D006194 1.3e-36 156.4 112 81.2
Sc25g0003240 Simmondsia chinensis HOM05D005046 ORTHO05D006194 2.2e-36 155.6 111 82.0
unitig_749.g13361 Utricularia gibba HOM05D005046 ORTHO05D006194 2.2e-36 155.6 105 81.0
Nitab4.5_0000403g0120 Nicotiana tabacum HOM05D005046 ORTHO05D006194 4.9e-36 154.5 111 79.3
Hund11979 Selenicereus undatus HOM05D005046 ORTHO05D006194 1.1e-35 153.3 111 78.4
ATR0693G376 Amborella trichopoda HOM05D005046 ORTHO05D006194 3.2e-35 151.8 99 87.9
BcaC05g30546 Brassica carinata HOM05D005046 ORTHO05D006194 3.2e-35 151.8 111 80.2
A05p41430 Brassica napus HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 79.1
C05p60640 Brassica napus HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 79.1
BolC5t34723H Brassica oleracea HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 79.1
BraA05t22864Z Brassica rapa HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 79.1
Thhalv10021793m.g Eutrema salsugineum HOM05D005046 ORTHO05D006194 3.2e-35 151.8 110 78.2
BraA01t04428Z Brassica rapa HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 78.2
Sp3g05540 Schrenkiella parvula HOM05D005046 ORTHO05D006194 4.2e-35 151.4 110 79.1
Os03g0832300 Oryza sativa ssp. japonica HOM05D005046 ORTHO05D006194 5.4e-35 151.0 103 80.6
THA.LOC104805014 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 9.3e-35 150.2 110 79.1
CARHR081150 Cardamine hirsuta HOM05D005046 ORTHO05D006194 2.1e-34 149.1 110 77.3
THA.LOC104818881 Tarenaya hassleriana HOM05D005046 ORTHO05D006194 2.1e-34 149.1 110 78.2
AT3G06610 Arabidopsis thaliana HOM05D005046 ORTHO05D006194 2.7e-34 148.7 110 77.3
Pp3c15_12430 Physcomitrium patens HOM05D005046 ORTHO05D006194 2.7e-34 148.7 106 80.2
Aa31LG5G17170 Aethionema arabicum HOM05D005046 ORTHO05D006194 3.5e-34 148.3 110 76.4
BolC1t05599H Brassica oleracea HOM05D005046 ORTHO05D006194 4.6e-34 147.9 110 77.3
Actinidia13356 Actinidia chinensis HOM05D005046 ORTHO05D006194 6.0e-34 147.5 99 83.8
Carub.0003s0607 Capsella rubella HOM05D005046 ORTHO05D006194 7.9e-34 147.1 110 77.3
AUR62016211 Chenopodium quinoa HOM05D005046 ORTHO05D006194 1.0e-33 146.7 113 76.1
Zm00001eb211320 Zea mays HOM05D005046 ORTHO05D006194 1.0e-33 146.7 100 81.0
EL10Ac3g05511 Beta vulgaris HOM05D005046 ORTHO05D006194 1.3e-33 146.4 111 74.8
Sabra08G0079200 Salix brachista HOM05D005046 ORTHO05D006194 5.1e-33 144.4 112 77.7
AL3G17660 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 6.7e-33 144.1 110 75.5
CAN.G158.24 Capsicum annuum HOM05D005046 ORTHO05D006194 6.7e-33 144.1 111 74.8
AagrBONN_evm.TU.Sc2ySwM_368.969 Anthoceros agrestis HOM05D005046 ORTHO05D006194 8.7e-33 143.7 97 80.4
Ah.13g071840 Amaranthus hybridus HOM05D005046 ORTHO05D006194 1.5e-32 142.9 111 73.9
AUR62039277 Chenopodium quinoa HOM05D005046 ORTHO05D006194 4.3e-32 141.4 111 73.0
PSO063G6303 Papaver somniferum HOM05D005046 ORTHO05D006194 6.2e-31 137.5 112 68.8
SMO304G0028 Selaginella moellendorffii HOM05D005046 ORTHO05D006194 8.1e-31 137.1 97 75.3
Nitab4.5_0000496g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.1e-30 136.7 111 72.1
ECA240G2346 Erigeron canadensis HOM05D005046 ORTHO05D006194 1.8e-30 136.0 109 75.2
PSO017G4602 Papaver somniferum HOM05D005046 ORTHO05D006194 3.1e-30 135.2 112 70.5
Nitab4.5_0002150g0070 Nicotiana tabacum HOM05D005046 ORTHO05D006194 5.8e-29 131.0 111 71.2
Mapoly0010s0169 Marchantia polymorpha HOM05D005046 ORTHO05D006194 1.7e-28 129.4 98 73.5
vmacro15180 Vaccinium macrocarpon HOM05D005046 ORTHO05D006194 2.2e-28 129.0 182 52.2
AagrBONN_evm.TU.Sc2ySwM_368.976 Anthoceros agrestis HOM05D005046 ORTHO05D006194 4.9e-28 127.9 85 81.2
Cc03_g00760 Coffea canephora HOM05D005046 ORTHO05D006194 1.1e-27 126.7 83 85.5
Nitab4.5_0002294g0080 Nicotiana tabacum HOM05D005046 ORTHO05D006194 1.9e-27 125.9 111 69.4
CBR_g51449 Chara braunii HOM05D005046 ORTHO05D006194 1.8e-25 119.4 96 67.7
Manes.03G205301 Manihot esculenta HOM05D005046 ORTHO05D006194 1.3e-23 113.2 107 64.5
BcaC09g47907 Brassica carinata HOM05D005046 ORTHO05D006194 2.1e-23 112.5 110 63.6
Gohir.D02G059900 Gossypium hirsutum HOM05D005046 ORTHO05D006194 1.1e-22 110.2 68 88.2
TAR365G1002 Trochodendron aralioides HOM05D005046 ORTHO05D006194 3.9e-17 91.7 62 83.9
Atru.chr4.2994 Acer truncatum HOM05D005046 ORTHO05D006194 1.5e-16 89.7 53 90.6
Eucgr.J02724 Eucalyptus grandis HOM05D005046 ORTHO05D006194 8.2e-15 84.0 50 92.0
Lj5g0009192 Lotus japonicus HOM05D005046 ORTHO05D006194 1.1e-14 83.6 92 58.7
Lj1g0019312 Lotus japonicus HOM05D005046 ORTHO05D006194 2.4e-14 82.4 109 51.4
SEGI_33495 Sequoiadendron giganteum HOM05D005046 ORTHO05D006194 1.2e-13 80.1 57 77.2
DCAR_026983 Daucus carota HOM05D005046 ORTHO05D006194 1.5e-13 79.7 59 78.0
AL3G18870 Arabidopsis lyrata HOM05D005046 ORTHO05D006194 1.3e-12 76.6 62 72.6
RcHm_v2.0_Chr5g0023271 Rosa chinensis HOM05D005046 ORTHO05D006194 2.9e-12 75.5 70 64.3
Atru.chr4.2993 Acer truncatum HOM05D005046 ORTHO05D006194 1.5e-08 63.2 52 73.1
Cre01.g041000 Chlamydomonas reinhardtii HOM05D005046 ORTHO05D006194 9.1e-06 53.9 110 37.3


User provided reference genes

Program Settings