Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 1.5e-193 679.5 384 100.0
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 9.6e-172 607.1 385 91.2
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 2.2e-120 436.4 362 74.3
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 5.5e-119 431.8 375 72.8
Lalb_Chr20g0120221 Lupinus albus HOM05D005472 ORTHO05D005897 3.4e-108 396.0 390 57.9
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 1.4e-101 374.0 385 64.7
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 4.6e-97 359.0 424 54.2
Medtr2g031630 Medicago truncatula HOM05D005472 ORTHO05D005897 2.6e-92 343.2 376 59.0
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 2.5e-87 326.6 374 58.0
arahy.Tifrunner.gnm1.ann1.MUE9LA Arachis hypogaea HOM05D000672 ORTHO05D000522 9.2e-82 308.1 365 56.4
arahy.Tifrunner.gnm1.ann1.C4XWSY Arachis hypogaea HOM05D000672 ORTHO05D000522 2.7e-81 306.6 367 55.0
Psat1g164760 Pisum sativum HOM05D005472 ORTHO05D005897 4.4e-76 289.3 403 49.1
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 6.0e-65 252.3 365 44.1
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 3.9e-64 249.6 365 43.0
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.3e-63 246.1 365 45.2
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 3.6e-62 243.0 367 42.5
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.0e-61 239.6 364 41.8
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 4.0e-61 239.6 364 41.5
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 6.9e-61 238.8 364 41.5
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 1.5e-60 237.7 367 43.3
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 4.5e-60 236.1 381 45.4
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 9.9e-60 235.0 379 43.8
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 6.4e-59 232.3 369 40.1
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 1.9e-58 230.7 368 39.9
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 6.0e-57 225.7 363 40.5
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 7.9e-57 225.3 365 41.1
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 3.0e-56 223.4 374 37.4
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 3.9e-56 223.0 363 39.9
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 5.6e-55 219.2 365 40.3
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 5.6e-55 219.2 363 39.4
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 2.1e-54 217.2 379 40.1
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 3.6e-54 216.5 323 45.2
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 3.6e-54 216.5 370 40.5
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 6.2e-54 215.7 363 41.0
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 6.2e-54 215.7 365 40.5
ClCG08G014280 Citrullus lanatus HOM05D005472 ORTHO05D005897 1.4e-53 214.5 377 40.8
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.6e-52 210.3 365 38.9
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 9.9e-52 208.4 367 39.2
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 1.3e-51 208.0 398 38.7
MELO3C011012.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.7e-51 207.6 368 39.4
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 8.4e-51 205.3 367 41.4
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 8.4e-51 205.3 368 39.1
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 1.1e-50 204.9 366 43.2
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 1.4e-50 204.5 367 37.9
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 1.9e-50 204.1 329 40.1
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.4e-50 203.8 354 39.3
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 4.2e-50 203.0 368 36.1
TAR628G1150 Trochodendron aralioides HOM05D005472 ORTHO05D005897 5.5e-50 202.6 347 39.8
CsaV3_2G029530 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.2e-49 201.4 368 39.7
CANSAT25G0086 Cannabis sativa HOM05D005472 ORTHO05D005897 2.1e-49 200.7 379 41.4
Cc10_g01680 Coffea canephora HOM05D005472 ORTHO05D005897 1.0e-48 198.4 377 40.1
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 1.3e-48 198.0 374 38.0
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 3.3e-47 193.4 377 37.4
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 3.7e-46 189.9 387 38.5
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 8.2e-46 188.7 362 36.5
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 3.1e-45 186.8 375 38.7
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 4.0e-45 186.4 319 35.1
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 4.0e-45 186.4 369 37.1
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 5.3e-45 186.0 370 37.3
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 1.2e-44 184.9 294 40.8
MD15G1012000 Malus domestica HOM05D005472 ORTHO05D005897 1.2e-44 184.9 363 36.1
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.3e-43 181.4 329 37.7
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 2.9e-43 180.3 368 39.1
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 8.4e-43 178.7 387 38.2
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.1e-42 178.3 363 35.0
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.4e-42 177.9 367 37.1
Ciclev10001635m.g Citrus clementina HOM05D005472 ORTHO05D005897 1.4e-42 177.9 392 34.9
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 3.2e-42 176.8 366 39.1
Sabra02G0018300 Salix brachista HOM05D005472 ORTHO05D005897 3.2e-42 176.8 368 35.9
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 4.2e-42 176.4 387 38.2
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 1.3e-40 171.4 363 34.4
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 2.3e-40 170.6 240 42.5
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 2.5e-39 167.2 363 34.2
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 2.5e-39 167.2 363 37.5
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.3e-39 166.4 313 35.8
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 4.3e-39 166.4 362 38.1
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 9.6e-39 165.2 366 38.5
CDE05G3315 Ceratophyllum demersum HOM05D005472 ORTHO05D005897 9.6e-39 165.2 369 35.0
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 2.1e-38 164.1 221 46.2
Sed0011447 Sechium edule HOM05D005472 ORTHO05D005897 2.1e-38 164.1 367 33.0
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 2.8e-38 163.7 362 34.5
Nitab4.5_0002561g0030 Nicotiana tabacum HOM05D005472 ORTHO05D005897 4.8e-38 162.9 360 34.7
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 8.2e-38 162.2 364 33.2
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.1e-37 161.8 342 33.6
TAR376G0796 Trochodendron aralioides HOM05D005472 ORTHO05D003948 5.3e-37 159.5 360 34.2
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 1.5e-36 157.9 331 35.3
CSS0003502 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 2.6e-36 157.1 372 34.4
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 3.4e-36 156.8 366 38.0
EL10Ac1g02216 Beta vulgaris HOM05D005472 ORTHO05D005897 4.5e-36 156.4 330 35.5
Dinv31847 Davidia involucrata HOM05D005472 ORTHO05D005897 5.9e-36 156.0 329 36.5
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 1.0e-35 155.2 366 38.0
Actinidia15422 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.7e-35 154.5 364 33.0
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 8.5e-35 152.1 363 32.0
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 1.6e-33 147.9 306 37.9
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 7.9e-33 145.6 363 38.3
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 5.1e-32 142.9 363 37.7
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 6.7e-32 142.5 392 30.6
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 1.5e-31 141.4 362 37.8
Ah.11g039690 Amaranthus hybridus HOM05D005472 ORTHO05D005897 2.5e-31 140.6 239 37.7
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 1.3e-30 138.3 390 30.0
vmacro07586 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 5.3e-29 132.9 370 36.5
CDE05G0022 Ceratophyllum demersum HOM05D004890 ORTHO05D005869 2.6e-28 130.6 287 33.1
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 7.7e-28 129.0 313 31.9
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 1.1e-26 125.2 235 32.8
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 1.4e-26 124.8 387 31.3
vmacro21726 Vaccinium macrocarpon HOM05D005472 ORTHO05D005897 4.2e-26 123.2 370 36.2
MBI09_g31922_MAGBIO Magnolia biondii HOM05D005472 ORTHO05D005897 5.5e-26 122.9 237 34.6
Sc02g0008580 Simmondsia chinensis HOM05D005472 ORTHO05D005897 1.2e-25 121.7 384 35.7
Oeu007327.1 Olea europaea HOM05D005472 ORTHO05D005897 6.1e-25 119.4 379 36.9
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 3.0e-24 117.1 317 36.0
CSS0003212 Camellia sinensis var. sinensis HOM05D005472 ORTHO05D005897 5.1e-24 116.3 314 30.6
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 1.1e-23 115.2 315 34.6
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 2.6e-23 114.0 388 28.4
SHI08069 Sapria himalayana HOM05D005472 ORTHO05D005897 3.3e-23 113.6 328 29.3
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 2.4e-21 107.5 398 29.1
HanXRQChr11g0322621 Helianthus annuus HOM05D005472 ORTHO05D005897 3.1e-21 107.1 358 27.1
ATR0810G127 Amborella trichopoda HOM05D005472 ORTHO05D005897 6.9e-21 105.9 246 33.7
HanXRQChr05g0145181 Helianthus annuus HOM05D005472 ORTHO05D005897 1.2e-20 105.1 351 28.5
MD08G1013200 Malus domestica HOM05D005472 ORTHO05D005897 1.0e-19 102.1 168 42.3
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.4e-18 98.2 165 40.6
Lsat_1_v5_gn_9_46920 Lactuca sativa HOM05D005472 ORTHO05D005897 4.2e-18 96.7 364 35.7
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 4.2e-18 96.7 312 35.6
Actinidia16989 Actinidia chinensis HOM05D005472 ORTHO05D005897 1.6e-17 94.7 293 29.0
PGR031G2226 Punica granatum HOM05D005472 ORTHO05D005897 1.6e-17 94.7 229 34.5
CANSAT78G2470 Cannabis sativa HOM05D005472 ORTHO05D005897 6.7e-16 89.4 121 41.3
Rhsim06G0021600 Rhododendron simsii HOM05D005472 ORTHO05D005897 6.7e-16 89.4 370 31.9
CAN.G1271.17 Capsicum annuum HOM05D005472 ORTHO05D005897 7.4e-15 85.9 268 30.6
ECA232G3880 Erigeron canadensis HOM05D005472 ORTHO05D005897 2.2e-14 84.3 246 26.0
HPP92_025683 Vanilla planifolia HOM05D005472 ORTHO05D005897 3.7e-14 83.6 236 29.2
SGA_v2.0_scaffold11G05917 Striga asiatica HOM05D005472 ORTHO05D005897 9.1e-13 79.0 384 30.7
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 1.6e-12 78.2 247 28.7
MD00G1092800 Malus domestica HOM05D005472 ORTHO05D005897 2.9e-11 73.9 93 43.0
Aqoxy5G01787 Aquilegia oxysepala HOM05D000073 ORTHO05D000033 6.5e-11 72.8 205 28.3
SGA_v2.0_scaffold92G28230 Striga asiatica HOM05D005472 ORTHO05D005897 3.2e-10 70.5 379 25.9
SEGI_34762 Sequoiadendron giganteum HOM05D005472 ORTHO05D005897 9.4e-10 68.9 218 27.1
Zm00001eb121210 Zea mays HOM05D005472 ORTHO05D005897 1.4e-08 65.1 228 26.3
MSTRG.25248 Avicennia marina HOM05D005472 ORTHO05D005897 2.3e-08 64.3 213 31.0


User provided reference genes

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