Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G025700 Glycine max HOM05D002428 ORTHO05D005085 1.4e-204 716.1 370 100.0
Glyma.15G131900 Glycine max HOM05D002428 ORTHO05D005085 6.2e-192 674.1 370 93.2
VMungo0540G1973 Vigna mungo HOM05D002428 ORTHO05D005085 2.8e-168 595.5 370 83.2
Phvul.006G126700 Phaseolus vulgaris HOM05D002428 ORTHO05D005085 5.3e-167 591.3 370 82.2
Lj6g0025937 Lotus japonicus HOM05D002428 ORTHO05D005085 7.1e-156 554.3 377 79.3
TPR.G26368 Trifolium pratense HOM05D002428 ORTHO05D005085 3.9e-154 548.5 374 78.3
Medtr2g030560 Medicago truncatula HOM05D002428 ORTHO05D005085 1.1e-153 547.0 374 78.3
Lalb_Chr20g0120151 Lupinus albus HOM05D002428 ORTHO05D005085 4.0e-151 538.5 374 77.5
Ca_00857_v3 Cicer arietinum L. HOM05D002428 ORTHO05D005085 7.1e-148 527.7 349 79.1
Lalb_Chr18g0058061 Lupinus albus HOM05D002428 ORTHO05D005085 4.2e-140 501.9 374 73.3
arahy.Tifrunner.gnm1.ann1.2WG9BE Arachis hypogaea HOM05D002428 ORTHO05D005085 1.8e-138 496.5 373 71.6
arahy.Tifrunner.gnm1.ann1.CV7WQS Arachis hypogaea HOM05D002428 ORTHO05D005085 5.1e-138 495.0 373 71.0
Psat7g008880 Pisum sativum HOM05D002428 ORTHO05D005085 7.2e-124 448.0 329 73.9
QL06p024041 Quercus lobata HOM05D002428 ORTHO05D005085 2.6e-110 402.9 376 58.0
Prupe.1G005000 Prunus persica HOM05D002428 ORTHO05D005085 2.9e-109 399.4 371 60.4
Haze_11595 Corylus avellana HOM05D002428 ORTHO05D005085 4.2e-108 395.6 377 57.0
CiPaw.01G122700 Carya illinoinensis HOM05D002428 ORTHO05D005085 9.4e-108 394.4 378 57.4
MD04G1005200 Malus domestica HOM05D002428 ORTHO05D005085 9.4e-108 394.4 371 58.8
MD07G1287300 Malus domestica HOM05D002428 ORTHO05D005085 9.4e-108 394.4 371 58.8
Psat1g166480 Pisum sativum HOM05D002428 ORTHO05D005085 1.2e-107 394.0 289 73.7
MD04G1005300 Malus domestica HOM05D002428 ORTHO05D005085 2.3e-106 389.8 371 58.2
FvH4_4g00480 Fragaria vesca HOM05D002428 ORTHO05D005085 5.2e-106 388.7 374 55.9
FAN12G1312 Fragaria x ananassa HOM05D002428 ORTHO05D005085 5.2e-106 388.7 374 55.9
RcHm_v2.0_Chr4g0385911 Rosa chinensis HOM05D002428 ORTHO05D005085 3.1e-103 379.4 370 57.3
CANSAT78G0072 Cannabis sativa HOM05D002428 ORTHO05D005085 1.2e-102 377.5 364 57.7
Potri.001G049800 Populus trichocarpa HOM05D002428 ORTHO05D005085 1.6e-102 377.1 375 57.1
Sabra01G0034700 Salix brachista HOM05D002428 ORTHO05D005085 1.9e-100 370.2 375 55.2
Duzib151G0814 Durio zibethinus HOM05D002428 ORTHO05D005085 2.5e-100 369.8 369 55.6
GSVIVG01021082001 Vitis vinifera HOM05D002428 ORTHO05D005085 2.5e-100 369.8 383 56.4
Gohir.D09G197800 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.6e-99 367.1 369 55.6
CSS0050051 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 2.1e-99 366.7 386 54.7
FAN22G0466 Fragaria x ananassa HOM05D002428 ORTHO05D005085 4.7e-99 365.5 370 53.0
TAR362G0527 Trochodendron aralioides HOM05D002428 ORTHO05D005085 6.1e-99 365.2 384 53.4
CSS0020338 Camellia sinensis var. sinensis HOM05D002428 ORTHO05D005085 1.0e-98 364.4 386 54.4
Gohir.A09G204000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.3e-98 363.2 369 55.3
Thecc.04G206400 Theobroma cacao HOM05D002428 ORTHO05D005085 1.2e-97 360.9 375 54.1
Gorai.006G221300 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.6e-97 359.8 369 55.0
Atru.chr4.1736 Acer truncatum HOM05D002428 ORTHO05D005085 7.5e-97 358.2 379 53.3
Manes.03G149000 Manihot esculenta HOM05D002428 ORTHO05D005085 7.5e-97 358.2 379 53.0
Gorai.011G160000 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.2e-96 356.7 369 53.9
Gohir.D10G143200 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.4e-95 353.2 369 53.4
FAN17G2111 Fragaria x ananassa HOM05D002428 ORTHO05D005085 1.2e-94 350.9 415 49.2
Gohir.A10G122900 Gossypium hirsutum HOM05D002428 ORTHO05D005085 3.5e-94 349.4 369 52.8
RcHm_v2.0_Chr4g0385791 Rosa chinensis HOM05D002428 ORTHO05D005085 5.9e-94 348.6 368 54.9
Actinidia35873 Actinidia chinensis HOM05D002428 ORTHO05D005085 1.3e-93 347.4 379 53.0
Ciclev10005183m.g Citrus clementina HOM05D002428 ORTHO05D005085 1.7e-93 347.1 381 53.3
Potri.003G178400 Populus trichocarpa HOM05D002428 ORTHO05D005085 6.6e-93 345.1 377 53.6
Gohir.A02G023600 Gossypium hirsutum HOM05D002428 ORTHO05D005085 4.0e-90 335.9 369 50.9
Nn1g07810 Nelumbo nucifera HOM05D002428 ORTHO05D005085 4.0e-90 335.9 375 53.1
Aqoxy5G00065 Aquilegia oxysepala HOM05D002428 ORTHO05D005085 2.0e-89 333.6 374 51.1
Manes.15G052100 Manihot esculenta HOM05D002428 ORTHO05D005085 5.7e-89 332.0 321 59.2
Rhsim09G0054900 Rhododendron simsii HOM05D002428 ORTHO05D005085 5.7e-89 332.0 340 56.5
Gohir.D02G031000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 9.8e-89 331.3 369 50.9
ClCG05G003400 Citrullus lanatus HOM05D002428 ORTHO05D005085 4.9e-88 328.9 375 49.3
Dinv29583 Davidia involucrata HOM05D002428 ORTHO05D005085 1.1e-87 327.8 356 53.7
Dinv38249 Davidia involucrata HOM05D002428 ORTHO05D005085 1.1e-87 327.8 330 57.3
Gorai.005G034400 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.4e-87 326.6 369 50.7
CsaV3_3G011070 Cucumis sativus L. HOM05D002428 ORTHO05D005085 4.1e-87 325.9 377 49.6
Eucgr.H02858 Eucalyptus grandis HOM05D002428 ORTHO05D005085 3.5e-86 322.8 381 51.2
Nn3g19943 Nelumbo nucifera HOM05D002428 ORTHO05D005085 5.9e-86 322.0 384 50.3
Sed0022855 Sechium edule HOM05D002428 ORTHO05D005085 5.9e-86 322.0 375 49.3
Sabra03G0130800 Salix brachista HOM05D002428 ORTHO05D005085 6.6e-85 318.5 365 52.1
Sed0008750 Sechium edule HOM05D002428 ORTHO05D005085 8.6e-85 318.2 377 48.8
Lsat_1_v5_gn_6_59860 Lactuca sativa HOM05D002428 ORTHO05D005085 1.5e-84 317.4 355 50.4
PGR031G3462 Punica granatum HOM05D002428 ORTHO05D005085 1.5e-84 317.4 372 50.5
COL.COLO4_20262 Corchorus olitorius HOM05D002428 ORTHO05D005085 5.6e-84 315.5 320 55.9
CAN.G500.14 Capsicum annuum HOM05D002428 ORTHO05D005085 2.1e-83 313.5 367 50.1
THA.LOC104804814 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 3.6e-83 312.8 371 48.2
Sp3g21770 Schrenkiella parvula HOM05D002428 ORTHO05D005085 5.2e-82 308.9 369 48.0
THA.LOC104808717 Tarenaya hassleriana HOM05D002428 ORTHO05D005085 2.0e-81 307.0 368 47.8
Nitab4.5_0003750g0010 Nicotiana tabacum HOM05D002428 ORTHO05D005085 5.8e-81 305.4 370 48.6
Duzib212G0991 Durio zibethinus HOM05D002428 ORTHO05D005085 7.5e-81 305.1 366 51.4
HanXRQChr15g0484251 Helianthus annuus HOM05D002428 ORTHO05D005085 7.5e-81 305.1 369 48.8
Sopen09g034710 Solanum pennellii HOM05D002428 ORTHO05D005085 9.8e-81 304.7 376 47.9
Thhalv10002585m.g Eutrema salsugineum HOM05D002428 ORTHO05D005085 2.2e-80 303.5 353 48.4
PGSC0003DMG400029636 Solanum tuberosum HOM05D002428 ORTHO05D005085 2.2e-80 303.5 376 47.6
Sc13g0000100 Simmondsia chinensis HOM05D002428 ORTHO05D005085 1.1e-79 301.2 384 47.7
CARHR100040 Cardamine hirsuta HOM05D002428 ORTHO05D005085 1.4e-79 300.8 353 49.3
MSTRG.9822 Avicennia marina HOM05D002428 ORTHO05D005085 5.4e-79 298.9 370 48.4
vmacro00484 Vaccinium macrocarpon HOM05D002428 ORTHO05D005085 5.4e-79 298.9 311 54.0
BcaB03g14602 Brassica carinata HOM05D002428 ORTHO05D005085 7.0e-79 298.5 369 46.9
AL3G39100 Arabidopsis lyrata HOM05D002428 ORTHO05D005085 6.0e-78 295.4 374 46.5
Oeu018226.1 Olea europaea HOM05D002428 ORTHO05D005085 7.8e-78 295.0 347 50.1
A01p31110 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-77 293.9 376 47.1
BraA01t03235Z Brassica rapa HOM05D002428 ORTHO05D005085 1.7e-77 293.9 376 47.1
BcaB06g26571 Brassica carinata HOM05D002428 ORTHO05D005085 3.0e-77 293.1 354 47.7
C01p39650 Brassica napus HOM05D002428 ORTHO05D005085 1.5e-76 290.8 376 47.1
BolC1t03917H Brassica oleracea HOM05D002428 ORTHO05D005085 1.5e-76 290.8 376 47.1
SalBow8G0494 Salvia bowleyana HOM05D002428 ORTHO05D005085 2.5e-76 290.0 375 47.7
AT3G24160 Arabidopsis thaliana HOM05D002428 ORTHO05D005085 3.3e-76 289.7 376 46.5
Eucgr.G01177 Eucalyptus grandis HOM05D002428 ORTHO05D005085 7.3e-76 288.5 370 48.6
Cc03_g07640 Coffea canephora HOM05D002428 ORTHO05D005085 9.5e-76 288.1 388 49.7
Peaxi162Scf00047g00728 Petunia axillaris HOM05D002428 ORTHO05D005085 9.5e-76 288.1 365 46.0
A03p43460 Brassica napus HOM05D002428 ORTHO05D005085 1.6e-75 287.3 366 47.0
Nitab4.5_0004974g0030 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.6e-75 287.3 366 47.0
BcaC01g03347 Brassica carinata HOM05D002428 ORTHO05D005085 8.1e-75 285.0 373 46.9
BolC3t17603H Brassica oleracea HOM05D002428 ORTHO05D005085 1.4e-74 284.3 373 46.6
ECA238G3133 Erigeron canadensis HOM05D002428 ORTHO05D005085 1.4e-74 284.3 326 50.0
BraA03t13484Z Brassica rapa HOM05D002428 ORTHO05D005085 5.2e-74 282.3 366 46.4
C03p53420 Brassica napus HOM05D002428 ORTHO05D005085 8.9e-74 281.6 373 46.6
TAR633G2286 Trochodendron aralioides HOM05D002428 ORTHO05D005085 1.5e-73 280.8 366 48.6
Lsat_1_v5_gn_2_45560 Lactuca sativa HOM05D002428 ORTHO05D005085 3.4e-73 279.6 360 46.4
Carub.0003s2434 Capsella rubella HOM05D002428 ORTHO05D005085 1.7e-72 277.3 356 46.6
PSO170G6100 Papaver somniferum HOM05D002428 ORTHO05D005085 4.9e-72 275.8 380 44.5
BcaB04g20405 Brassica carinata HOM05D002428 ORTHO05D005085 6.4e-72 275.4 370 45.1
MBI10_g05704_MAGBIO Magnolia biondii HOM05D002428 ORTHO05D005085 1.1e-71 274.6 375 45.3
Migut.G00669 Erythranthe guttata HOM05D002428 ORTHO05D005085 1.4e-71 274.2 378 45.8
A07p08320 Brassica napus HOM05D002428 ORTHO05D005085 2.4e-71 273.5 371 44.5
BraA07t28615Z Brassica rapa HOM05D002428 ORTHO05D005085 2.4e-71 273.5 371 44.5
Zm00001eb038510 Zea mays HOM05D002428 ORTHO05D005085 1.6e-70 270.8 352 43.2
DCAR_026601 Daucus carota HOM05D002428 ORTHO05D005085 2.7e-70 270.0 303 51.5
EL10Ac3g07490 Beta vulgaris HOM05D002428 ORTHO05D005085 7.8e-70 268.5 371 45.0
unitig_26.g9776 Utricularia gibba HOM05D002428 ORTHO05D005085 1.0e-69 268.1 368 45.9
BolC7t41792H Brassica oleracea HOM05D002428 ORTHO05D005085 1.3e-69 267.7 367 43.9
BcaC06g35609 Brassica carinata HOM05D002428 ORTHO05D005085 1.7e-69 267.3 367 44.1
C07p12990 Brassica napus HOM05D002428 ORTHO05D005085 1.7e-69 267.3 367 44.1
PSO674G0088 Papaver somniferum HOM05D002428 ORTHO05D005085 1.5e-68 264.2 404 42.6
SGA_v2.0_scaffold72G24051 Striga asiatica HOM05D002428 ORTHO05D005085 1.5e-68 264.2 377 44.6
Os08g0567000 Oryza sativa ssp. japonica HOM05D002428 ORTHO05D005085 2.6e-65 253.4 348 42.5
Aa31LG8G10690 Aethionema arabicum HOM05D002428 ORTHO05D005085 8.4e-64 248.4 332 44.0
CDE09G0695 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 1.4e-63 247.7 371 40.7
CDE11G0336 Ceratophyllum demersum HOM05D002428 ORTHO05D005085 3.2e-63 246.5 377 39.8
Actinidia25627 Actinidia chinensis HOM05D002428 ORTHO05D005085 7.8e-62 241.9 336 45.8
ATR0736G031 Amborella trichopoda HOM05D002428 ORTHO05D005085 3.9e-61 239.6 323 43.0
MELO3C006320.2 Cucumis melo HOM05D002428 ORTHO05D005085 1.1e-58 231.5 287 46.0
AUR62020812 Chenopodium quinoa HOM05D002428 ORTHO05D005085 2.4e-58 230.3 347 42.1
HPP92_020844 Vanilla planifolia HOM05D002428 ORTHO05D005085 4.4e-57 226.1 384 40.9
Cpa.g.sc1744.1 Carica papaya HOM05D002428 ORTHO05D005085 6.2e-51 205.7 199 56.3
SEGI_17850 Sequoiadendron giganteum HOM05D002428 ORTHO05D005085 4.9e-48 196.1 327 39.8
AUR62032922 Chenopodium quinoa HOM05D002428 ORTHO05D005085 9.3e-47 191.8 279 42.7
Lalb_Chr15g0088821 Lupinus albus HOM05D002428 ORTHO05D005085 8.1e-35 152.1 102 73.5
Gohir.D01G133000 Gossypium hirsutum HOM05D002428 ORTHO05D005085 2.1e-30 137.5 165 45.5
Mapoly0023s0054 Marchantia polymorpha HOM05D002428 ORTHO05D005085 1.8e-29 134.4 373 31.4
Cpa.g.sc59.124 Carica papaya HOM05D002428 ORTHO05D005085 2.5e-28 130.6 131 58.0
Gorai.011G166500 Gossypium raimondii HOM05D002428 ORTHO05D005085 2.5e-28 130.6 139 46.8
SMO367G0336 Selaginella moellendorffii HOM05D002428 ORTHO05D005085 4.3e-28 129.8 395 29.1
Lj3A543T20 Lonicera japonica HOM05D002428 ORTHO05D005085 5.7e-28 129.4 132 60.6
Gohir.D07G140050 Gossypium hirsutum HOM05D002428 ORTHO05D005085 1.4e-26 124.8 131 48.1
Gorai.007G194000 Gossypium raimondii HOM05D002428 ORTHO05D005085 4.1e-26 123.2 126 48.4
Ah.01g001410 Amaranthus hybridus HOM05D002428 ORTHO05D005085 5.9e-25 119.4 243 35.8
CBR_g18980 Chara braunii HOM05D002428 ORTHO05D005085 2.9e-24 117.1 376 28.2
Pp3c14_7560 Physcomitrium patens HOM05D002428 ORTHO05D005085 5.0e-24 116.3 379 28.8
Glyma.15G198202 Glycine max HOM05D002428 ORTHO05D005085 8.4e-24 115.5 64 90.6
Pp3c10_8060 Physcomitrium patens HOM05D002428 ORTHO05D005085 2.5e-23 114.0 367 27.0
Ah.01g001400 Amaranthus hybridus HOM05D002428 ORTHO05D005085 2.1e-22 110.9 198 36.9
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 2.7e-22 110.5 158 41.8
Nitab4.5_0001063g0080 Nicotiana tabacum HOM05D002389 ORTHO05D005085 1.1e-15 88.6 233 30.9
Nitab4.5_0000081g0050 Nicotiana tabacum HOM05D002428 ORTHO05D005085 1.0e-13 82.0 152 31.6
PSO017G6711 Papaver somniferum HOM05D002428 ORTHO05D005085 1.5e-09 68.2 98 42.9
Rhsim09G0053800 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.5e-09 66.6 89 43.8
Rhsim09G0054400 Rhododendron simsii HOM05D002428 ORTHO05D005085 4.5e-09 66.6 89 43.8
Oeu044084.1 Olea europaea HOM05D002428 ORTHO05D005085 1.3e-08 65.1 77 49.4
Solyc05g044540.3 Solanum lycopersicum HOM05D008774 ORTHO05D010951 1.3e-08 65.1 82 36.6
Oeu003801.3 Olea europaea HOM05D000258 ORTHO05D000153 1.7e-08 64.7 76 51.3
Oeu061488.3 Olea europaea HOM05D001416 ORTHO05D002549 1.7e-08 64.7 54 59.3
Oeu041684.1 Olea europaea HOM05D002428 ORTHO05D005085 3.8e-08 63.5 57 59.6
Oeu020092.1 Olea europaea HOM05D002428 ORTHO05D005085 8.5e-08 62.4 77 48.1
Oeu051052.1 Olea europaea HOM05D002428 ORTHO05D005085 2.7e-06 57.4 90 43.3
Oeu022108.1 Olea europaea HOM05D002428 ORTHO05D005085 3.6e-06 57.0 47 57.4


User provided reference genes

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