Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G017600 Glycine max HOM05D007436 ORTHO05D009398 4.8e-126 454.5 231 100.0
Glyma.15G123400 Glycine max HOM05D007436 ORTHO05D009398 1.1e-114 416.8 224 94.2
Phvul.006G134500 Phaseolus vulgaris HOM05D007436 ORTHO05D009398 9.7e-111 403.7 233 88.8
VMungo0540G0488 Vigna mungo HOM05D007436 ORTHO05D009398 1.7e-110 402.9 233 87.6
Ca_24687_v3 Cicer arietinum L. HOM05D007436 ORTHO05D009398 5.3e-101 371.3 232 82.3
Lj6g0025098 Lotus japonicus HOM05D007436 ORTHO05D009398 8.5e-99 364.0 235 80.0
Psat1g171240 Pisum sativum HOM05D007436 ORTHO05D009398 1.9e-98 362.8 234 79.5
Medtr2g028000 Medicago truncatula HOM05D007436 ORTHO05D009398 4.4e-95 351.7 229 79.0
TPR.G10477 Trifolium pratense HOM05D007436 ORTHO05D009398 2.8e-94 349.0 227 78.9
Lalb_Chr15g0088471 Lupinus albus HOM05D007436 ORTHO05D009398 3.2e-90 335.5 231 74.9
Hma1.2p1_0394F.1_g143390 Hydrangea macrophylla HOM05D007436 ORTHO05D009398 2.0e-84 316.2 210 74.3
Dinv04377 Davidia involucrata HOM05D007436 ORTHO05D009398 1.0e-83 313.9 215 74.0
TAR627G0530 Trochodendron aralioides HOM05D007436 ORTHO05D009398 3.8e-83 312.0 215 73.0
MSTRG.14579 Avicennia marina HOM05D007436 ORTHO05D009398 1.1e-82 310.5 217 70.5
Prupe.4G000400 Prunus persica HOM05D007436 ORTHO05D009398 3.6e-81 305.4 206 71.4
Rhsim13G0138000 Rhododendron simsii HOM05D007436 ORTHO05D009398 3.6e-81 305.4 216 71.8
QL05p066185 Quercus lobata HOM05D007436 ORTHO05D009398 6.1e-81 304.7 235 67.2
Haze_07065 Corylus avellana HOM05D007436 ORTHO05D009398 8.0e-81 304.3 207 73.4
Ciclev10016151m.g Citrus clementina HOM05D007436 ORTHO05D009398 1.8e-80 303.1 218 67.0
MBI14_g12730_MAGBIO Magnolia biondii HOM05D007436 ORTHO05D009398 1.8e-80 303.1 205 71.7
TWI38G0239 Tripterygium wilfordii HOM05D007436 ORTHO05D009398 1.5e-79 300.1 208 72.1
Thecc.06G244700 Theobroma cacao HOM05D007436 ORTHO05D009398 2.0e-79 299.7 202 72.8
Actinidia01458 Actinidia chinensis HOM05D007436 ORTHO05D009398 2.6e-79 299.3 207 71.5
FvH4_3g00011 Fragaria vesca HOM05D007436 ORTHO05D009398 3.4e-79 298.9 204 71.1
Potri.016G000900 Populus trichocarpa HOM05D007436 ORTHO05D009398 3.4e-79 298.9 211 70.6
Potri.006G000600 Populus trichocarpa HOM05D007436 ORTHO05D009398 7.5e-79 297.7 175 80.6
COL.COLO4_31969 Corchorus olitorius HOM05D007436 ORTHO05D009398 1.3e-78 297.0 202 72.3
Migut.H01642 Erythranthe guttata HOM05D007436 ORTHO05D009398 1.7e-78 296.6 219 66.2
RcHm_v2.0_Chr5g0000011 Rosa chinensis HOM05D007436 ORTHO05D009398 3.7e-78 295.4 204 71.1
Nitab4.5_0000147g0110 Nicotiana tabacum HOM05D007436 ORTHO05D009398 4.9e-78 295.0 237 62.9
PGR004G2900 Punica granatum HOM05D007436 ORTHO05D009398 8.3e-78 294.3 198 71.2
Aqoxy5G00546 Aquilegia oxysepala HOM05D007436 ORTHO05D009398 1.1e-77 293.9 225 64.9
Gohir.D05G180600 Gossypium hirsutum HOM05D007436 ORTHO05D009398 1.8e-77 293.1 230 64.8
Gorai.009G185600 Gossypium raimondii HOM05D007436 ORTHO05D009398 1.8e-77 293.1 230 64.8
FAN21G3717 Fragaria x ananassa HOM05D007436 ORTHO05D009398 3.1e-77 292.4 195 72.3
Nitab4.5_0001663g0200 Nicotiana tabacum HOM05D007436 ORTHO05D009398 3.1e-77 292.4 235 63.8
MD10G1342400 Malus domestica HOM05D007436 ORTHO05D009398 7.0e-77 291.2 197 72.1
CAN.G1905.6 Capsicum annuum HOM05D007436 ORTHO05D009398 2.0e-76 289.7 231 63.2
CsaV3_6G047980 Cucumis sativus L. HOM05D007436 ORTHO05D009398 3.5e-76 288.9 213 67.1
ClCG01G021000 Citrullus lanatus HOM05D007436 ORTHO05D009398 5.9e-76 288.1 233 63.5
PGSC0003DMG400027262 Solanum tuberosum HOM05D007436 ORTHO05D009398 5.9e-76 288.1 173 77.5
ECA247G4131 Erigeron canadensis HOM05D007436 ORTHO05D009398 1.7e-75 286.6 172 76.7
vmacro03584 Vaccinium macrocarpon HOM05D007436 ORTHO05D009398 1.7e-75 286.6 248 62.5
Solyc04g015330.3 Solanum lycopersicum HOM05D007436 ORTHO05D009398 2.9e-75 285.8 173 76.9
arahy.Tifrunner.gnm1.ann1.61UQ0U Arachis hypogaea HOM05D007436 ORTHO05D009398 8.6e-75 284.3 230 70.0
Lsat_1_v5_gn_7_12720 Lactuca sativa HOM05D007436 ORTHO05D009398 8.6e-75 284.3 180 73.9
HanXRQChr05g0129051 Helianthus annuus HOM05D007436 ORTHO05D009398 1.9e-74 283.1 171 75.4
EL10Ac6g14103 Beta vulgaris HOM05D007436 ORTHO05D009398 2.5e-74 282.7 222 61.7
Cc09_g00050 Coffea canephora HOM05D007436 ORTHO05D009398 2.5e-74 282.7 183 73.2
Sopen04g007390 Solanum pennellii HOM05D007436 ORTHO05D009398 4.3e-74 282.0 173 75.1
DCAR_015316 Daucus carota HOM05D007436 ORTHO05D009398 5.6e-74 281.6 172 76.7
ATR0751G013 Amborella trichopoda HOM05D007436 ORTHO05D009398 2.8e-73 279.3 203 67.5
Sabra06G0000900 Salix brachista HOM05D002163 ORTHO05D002386 2.8e-73 279.3 189 75.1
Sed0017957 Sechium edule HOM05D007436 ORTHO05D009398 2.8e-73 279.3 204 66.2
HPP92_000124 Vanilla planifolia HOM05D007436 ORTHO05D009398 3.6e-73 278.9 224 63.4
GSVIVG01002756001 Vitis vinifera HOM05D007436 ORTHO05D009398 1.0e-72 277.3 215 65.6
Cpa.g.sc27.183 Carica papaya HOM05D007436 ORTHO05D009398 1.4e-72 276.9 262 57.3
CDE03G0161 Ceratophyllum demersum HOM05D007436 ORTHO05D009398 8.9e-72 274.2 204 65.7
AUR62028431 Chenopodium quinoa HOM05D007436 ORTHO05D009398 1.5e-71 273.5 213 62.4
CDE06G2435 Ceratophyllum demersum HOM05D007436 ORTHO05D009398 3.4e-71 272.3 230 58.7
Ah.02g128250 Amaranthus hybridus HOM05D007436 ORTHO05D009398 5.8e-71 271.6 194 66.0
Sc24g0002050 Simmondsia chinensis HOM05D007436 ORTHO05D009398 9.8e-71 270.8 212 64.2
AUR62002774 Chenopodium quinoa HOM05D007436 ORTHO05D009398 1.3e-70 270.4 221 60.6
Oeu016929.1 Olea europaea HOM05D007436 ORTHO05D009398 1.3e-70 270.4 176 75.6
Nn3g16606 Nelumbo nucifera HOM05D007436 ORTHO05D009398 3.2e-69 265.8 154 80.5
AL5G32730 Arabidopsis lyrata HOM05D007436 ORTHO05D009398 7.0e-69 264.6 179 71.5
AT3G52155 Arabidopsis thaliana HOM05D007436 ORTHO05D009398 9.2e-69 264.2 179 70.9
Aa31LG10G7250 Aethionema arabicum HOM05D007436 ORTHO05D009398 1.6e-68 263.5 171 73.7
Sp5g10120 Schrenkiella parvula HOM05D007436 ORTHO05D009398 4.6e-68 261.9 179 69.8
Carub.0005s1851 Capsella rubella HOM05D007436 ORTHO05D009398 6.0e-68 261.5 179 69.3
Os09g0287300 Oryza sativa ssp. japonica HOM05D007436 ORTHO05D009398 7.8e-68 261.2 170 74.1
THA.LOC104813862 Tarenaya hassleriana HOM05D007436 ORTHO05D009398 1.3e-67 260.4 210 61.4
Thhalv10010705m.g Eutrema salsugineum HOM05D007436 ORTHO05D009398 1.7e-67 260.0 206 63.6
CARHR161900 Cardamine hirsuta HOM05D007436 ORTHO05D009398 2.3e-67 259.6 196 64.8
BcaC06g33383 Brassica carinata HOM05D007436 ORTHO05D009398 3.9e-67 258.8 201 64.7
C07p46820 Brassica napus HOM05D007436 ORTHO05D009398 3.9e-67 258.8 201 64.7
BolC7t45199H Brassica oleracea HOM05D007436 ORTHO05D009398 3.9e-67 258.8 201 64.7
Zm00001eb309010 Zea mays HOM05D007436 ORTHO05D009398 8.6e-67 257.7 172 73.8
A03p48730 Brassica napus HOM05D007436 ORTHO05D009398 1.1e-66 257.3 179 69.8
BraA03t13973Z Brassica rapa HOM05D007436 ORTHO05D009398 1.1e-66 257.3 179 69.8
Peaxi162Scf00563g00525 Petunia axillaris HOM05D007436 ORTHO05D009398 4.3e-66 255.4 153 77.1
CiPaw.09G113200 Carya illinoinensis HOM05D007436 ORTHO05D009398 5.6e-66 255.0 187 69.0
Hund25779 Selenicereus undatus HOM05D007436 ORTHO05D009398 1.4e-64 250.4 208 60.1
Mapoly0056s0036 Marchantia polymorpha HOM05D007436 ORTHO05D009398 6.8e-64 248.1 187 63.1
Zm00001eb097480 Zea mays HOM05D007436 ORTHO05D009398 1.9e-61 240.0 152 77.6
Atru.chr1.2207 Acer truncatum HOM05D002163 ORTHO05D002386 3.0e-59 232.6 184 64.7
SMO358G0652 Selaginella moellendorffii HOM05D007436 ORTHO05D009398 4.3e-58 228.8 170 59.4
Pp3c4_8570 Physcomitrium patens HOM05D007436 ORTHO05D009398 5.6e-58 228.4 172 63.4
AagrBONN_evm.TU.Sc2ySwM_228.5510 Anthoceros agrestis HOM05D007436 ORTHO05D009398 3.7e-54 215.7 210 52.9
Sabra16G0007700 Salix brachista HOM05D002163 ORTHO05D002386 2.4e-53 213.0 223 55.6
Hma1.2p1_0394F.1_g143400 Hydrangea macrophylla HOM05D007436 ORTHO05D009398 7.1e-53 211.5 151 72.2
CBR_g31519 Chara braunii HOM05D007436 ORTHO05D009398 2.8e-49 199.5 181 55.2
Manes.09G072800 Manihot esculenta HOM05D007436 ORTHO05D009398 2.4e-48 196.4 160 66.2
Lj1A1250G60 Lonicera japonica HOM05D007436 ORTHO05D009398 4.9e-46 188.7 124 73.4
Gohir.A05G177200 Gossypium hirsutum HOM05D007436 ORTHO05D009398 6.0e-44 181.8 174 56.3
MELO3C007986.2 Cucumis melo HOM05D007436 ORTHO05D009398 2.3e-43 179.9 148 63.5
Eucgr.D00973 Eucalyptus grandis HOM05D007436 ORTHO05D009398 1.8e-40 170.2 212 44.3
SGA_v2.0_scaffold49G18215 Striga asiatica HOM05D007436 ORTHO05D009398 2.0e-39 166.8 203 46.3
SEGI_34845 Sequoiadendron giganteum HOM05D007436 ORTHO05D009398 5.3e-32 142.1 82 75.6
MCO14G290 Micromonas commoda HOM05D007436 ORTHO05D009398 1.3e-30 137.5 213 40.8
Cre10.g431850 Chlamydomonas reinhardtii HOM05D007436 ORTHO05D009398 2.2e-30 136.7 138 44.2
PRCOL_00006376 Prasinoderma coloniale HOM05D007436 ORTHO05D009398 2.1e-20 103.6 180 37.8
PRCOL_00004330 Prasinoderma coloniale HOM05D007436 ORTHO05D009398 1.3e-19 100.9 152 36.2
Lj1A1250G59 Lonicera japonica HOM05D007436 ORTHO05D009398 2.5e-13 80.1 39 89.7


User provided reference genes

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