Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 3.6e-91 338.2 167 100.0
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.5e-68 263.1 164 79.3
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 9.6e-68 260.4 157 82.2
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 2.8e-67 258.8 157 78.3
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.2e-65 253.4 162 75.9
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 3.8e-64 248.4 156 78.8
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 1.1e-63 246.9 156 78.2
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 1.9e-63 246.1 160 76.2
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 3.2e-63 245.4 156 77.6
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 5.4e-63 244.6 154 77.9
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 9.3e-47 190.7 140 62.1
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.8e-42 176.4 159 53.5
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 4.1e-42 175.3 159 52.2
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 7.6e-41 171.0 118 72.9
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 5.0e-40 168.3 157 54.8
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.4e-39 166.8 161 50.3
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.4e-39 166.8 161 51.6
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 1.9e-39 166.4 118 65.3
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 5.5e-39 164.9 156 52.6
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 6.1e-38 161.4 158 52.5
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 1.0e-37 160.6 160 50.0
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 1.1e-36 157.1 158 50.6
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 2.5e-36 156.0 156 48.7
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 5.7e-36 154.8 157 45.9
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 4.8e-35 151.8 164 47.6
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 4.8e-35 151.8 160 49.4
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 1.4e-34 150.2 160 46.2
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 1.4e-34 150.2 160 46.2
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.4e-34 149.4 163 45.4
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 6.9e-34 147.9 165 48.5
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.2e-33 147.1 139 49.6
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.5e-33 146.7 163 44.2
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 2.0e-33 146.4 165 46.7
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 2.6e-33 146.0 153 49.0
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.7e-33 144.4 164 47.6
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.0e-32 144.1 156 48.1
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 1.7e-32 143.3 123 56.9
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 6.5e-32 141.4 156 46.2
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 2.5e-31 139.4 156 45.5
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 3.2e-31 139.0 134 50.7
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 5.5e-31 138.3 123 55.3
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 6.1e-30 134.8 155 46.5
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 6.1e-30 134.8 148 46.6
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 7.9e-30 134.4 123 54.5
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 6.7e-29 131.3 159 43.4
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 3.3e-28 129.0 157 40.8
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 9.7e-28 127.5 135 45.2
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 9.7e-28 127.5 164 39.6
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 1.3e-27 127.1 125 48.8
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 2.2e-27 126.3 156 41.0
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 2.2e-27 126.3 154 40.9
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 3.7e-27 125.6 164 39.6
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 1.4e-26 123.6 161 39.8
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 1.4e-26 123.6 159 42.1
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.4e-26 123.6 98 53.1
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 1.4e-26 123.6 157 39.5
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 1.8e-26 123.2 156 41.7
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.8e-26 123.2 149 39.6
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.4e-26 122.9 155 41.9
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 3.1e-26 122.5 154 41.6
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 3.1e-26 122.5 155 38.7
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 3.1e-26 122.5 155 38.7
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.1e-26 122.1 129 45.7
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 4.1e-26 122.1 146 41.8
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 6.9e-26 121.3 136 44.1
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 6.9e-26 121.3 136 44.1
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 9.1e-26 120.9 154 40.3
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 9.1e-26 120.9 137 41.6
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 9.1e-26 120.9 154 40.3
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 9.1e-26 120.9 137 41.6
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 9.1e-26 120.9 156 42.3
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 2.0e-25 119.8 154 40.3
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 2.6e-25 119.4 160 38.1
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.4e-25 119.0 161 38.5
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 4.5e-25 118.6 153 39.9
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 4.5e-25 118.6 154 39.6
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 7.7e-25 117.9 151 37.7
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 7.7e-25 117.9 155 38.1
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 7.7e-25 117.9 132 43.9
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 1.0e-24 117.5 160 41.9
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 1.0e-24 117.5 160 41.9
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-24 117.1 160 41.9
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 1.3e-24 117.1 160 41.9
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 1.3e-24 117.1 160 41.9
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.7e-24 116.7 155 37.4
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.7e-24 116.7 158 38.0
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 2.2e-24 116.3 155 38.1
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 2.2e-24 116.3 153 39.2
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 2.9e-24 115.9 153 37.9
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 3.8e-24 115.5 137 40.9
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 5.0e-24 115.2 130 43.8
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 6.5e-24 114.8 118 48.3
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 6.5e-24 114.8 154 36.4
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 1.1e-23 114.0 161 35.4
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.9e-23 113.2 156 36.5
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 2.5e-23 112.8 155 38.7
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 3.2e-23 112.5 161 39.8
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 5.5e-23 111.7 143 37.8
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 7.2e-23 111.3 136 39.7
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 9.4e-23 110.9 153 36.6
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.6e-22 110.2 157 39.5
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 2.1e-22 109.8 155 37.4
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 2.1e-22 109.8 161 37.3
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 2.1e-22 109.8 157 38.9
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 2.7e-22 109.4 157 37.6
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 2.7e-22 109.4 162 37.0
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 2.7e-22 109.4 157 39.5
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 4.7e-22 108.6 153 35.9
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 4.7e-22 108.6 153 37.9
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 4.7e-22 108.6 157 38.9
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 4.7e-22 108.6 132 38.6
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 4.7e-22 108.6 130 38.5
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 6.1e-22 108.2 154 37.7
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 8.0e-22 107.8 157 35.0
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 8.0e-22 107.8 158 38.6
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 1.0e-21 107.5 155 36.1
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.0e-21 107.5 153 35.3
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 1.4e-21 107.1 143 36.4
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.4e-21 107.1 156 39.7
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 1.4e-21 107.1 156 37.8
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 1.8e-21 106.7 155 35.5
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 1.8e-21 106.7 108 51.9
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 1.8e-21 106.7 126 40.5
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 2.3e-21 106.3 138 40.6
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 3.0e-21 105.9 156 35.9
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 3.0e-21 105.9 155 37.4
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 3.0e-21 105.9 154 37.0
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 3.0e-21 105.9 151 37.1
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 3.9e-21 105.5 155 35.5
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 3.9e-21 105.5 141 37.6
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 3.9e-21 105.5 156 35.3
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 5.2e-21 105.1 159 35.2
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 5.2e-21 105.1 156 34.6
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 6.7e-21 104.8 152 34.9
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 2.0e-20 103.2 137 40.1
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 2.0e-20 103.2 154 35.7
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.0e-20 103.2 156 34.0
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 2.6e-20 102.8 154 38.3
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 3.3e-20 102.4 146 37.7
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 9.7e-20 100.9 155 34.8
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 9.7e-20 100.9 146 37.0
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 6.3e-19 98.2 131 36.6
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 1.4e-18 97.1 144 36.8
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.4e-18 97.1 134 35.1
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 3.1e-18 95.9 124 37.9
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 5.3e-18 95.1 163 35.6
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 1.2e-17 94.0 163 35.6
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 1.2e-17 94.0 160 32.5
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 3.5e-17 92.4 164 33.5
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 3.5e-17 92.4 138 38.4
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 1.3e-16 90.5 94 41.5
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 2.2e-16 89.7 98 46.9
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 1.1e-15 87.4 60 61.7
Glyma.15G116750 Glycine max HOM05D003663 ORTHO05D005327 3.2e-15 85.9 44 88.6
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.6e-14 82.4 108 38.0
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 3.6e-14 82.4 92 43.5
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 1.7e-11 73.6 158 31.0
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 6.3e-11 71.6 163 28.2
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 6.3e-11 71.6 80 41.2
Thecc.05G213800 Theobroma cacao HOM05D003663 ORTHO05D005327 3.5e-09 65.9 159 28.9
Mapoly0095s0061 Marchantia polymorpha HOM05D005423 ORTHO05D006223 4.5e-09 65.5 130 34.6
FAN02G2952 Fragaria x ananassa HOM05D000062 ORTHO05D000043 3.2e-07 59.3 76 39.5
Actinidia34308 Actinidia chinensis HOM05D003663 ORTHO05D005327 6.1e-06 55.1 70 40.0


User provided reference genes

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