Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G012000 Glycine max HOM05D004793 ORTHO05D004423 2.4e-72 275.4 141 100.0
Glyma.15G116700 Glycine max HOM05D004793 ORTHO05D004423 9.9e-66 253.4 140 94.3
Phvul.006G141500 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 1.4e-59 233.0 141 87.2
VMungo0540G1724 Vigna mungo HOM05D004793 ORTHO05D004423 5.3e-43 177.9 142 71.1
Medtr2g026510 Medicago truncatula HOM05D004793 ORTHO05D004423 3.0e-38 162.2 145 64.1
TPR.G10593 Trifolium pratense HOM05D004793 ORTHO05D004423 1.9e-37 159.5 147 65.3
Lj6g0021600 Lotus japonicus HOM05D004793 ORTHO05D004423 6.9e-35 151.0 150 66.0
Psat1g178240 Pisum sativum HOM05D004793 ORTHO05D004423 2.0e-34 149.4 149 61.7
Lalb_Chr15g0088081 Lupinus albus HOM05D004793 ORTHO05D004423 1.6e-31 139.8 149 63.1
Phvul.003G085100 Phaseolus vulgaris HOM05D004793 ORTHO05D004423 8.2e-28 127.5 147 55.8
Glyma.17G007500 Glycine max HOM05D004793 ORTHO05D004423 2.0e-26 122.9 148 56.8
VMungo1215G0069 Vigna mungo HOM05D004793 ORTHO05D004423 4.5e-26 121.7 147 53.7
Glyma.07G266600 Glycine max HOM05D004793 ORTHO05D004423 5.5e-24 114.8 146 56.8
Lj4g0015289 Lotus japonicus HOM05D004793 ORTHO05D004423 6.7e-22 107.8 153 50.3
Psat4g002280 Pisum sativum HOM05D004793 ORTHO05D004423 8.8e-22 107.5 149 51.0
QL05p068872 Quercus lobata HOM05D004793 ORTHO05D004423 1.1e-21 107.1 148 50.0
QL05p068371 Quercus lobata HOM05D004793 ORTHO05D004423 2.6e-21 105.9 148 48.6
Cfa000070 Carpinus fangiana HOM05D004793 ORTHO05D004423 3.3e-21 105.5 142 50.0
Haze_06976 Corylus avellana HOM05D004793 ORTHO05D004423 9.7e-21 104.0 141 49.6
Potri.006G016500 Populus trichocarpa HOM05D004793 ORTHO05D004423 3.7e-20 102.1 143 44.8
TPR.G6007 Trifolium pratense HOM05D004793 ORTHO05D004423 6.9e-19 97.8 159 47.8
GSVIVG01002881001 Vitis vinifera HOM05D000222 ORTHO05D003997 6.9e-19 97.8 142 46.5
Sabra16G0013200 Salix brachista HOM05D004793 ORTHO05D004423 2.6e-18 95.9 142 45.1
Medtr4g133720 Medicago truncatula HOM05D004793 ORTHO05D004423 7.7e-18 94.4 159 47.8
Prupe.4G007200 Prunus persica HOM05D004793 ORTHO05D004423 1.3e-17 93.6 161 47.2
Sabra06G0011800 Salix brachista HOM05D004793 ORTHO05D004423 1.7e-17 93.2 143 41.3
PGR004G1083 Punica granatum HOM05D004793 ORTHO05D004423 2.5e-16 89.4 147 45.6
Potri.016G009200 Populus trichocarpa HOM05D004793 ORTHO05D004423 7.2e-16 87.8 144 45.1
TAR627G0453 Trochodendron aralioides HOM05D004793 ORTHO05D004423 1.2e-15 87.0 141 42.6
Nn1g07451 Nelumbo nucifera HOM05D004793 ORTHO05D004423 2.1e-15 86.3 141 43.3
Potri.001G362000 Populus trichocarpa HOM05D004793 ORTHO05D004423 2.7e-15 85.9 140 44.3
GSVIVG01037785001 Vitis vinifera HOM05D004793 ORTHO05D004423 2.7e-15 85.9 140 43.6
Thecc.01G191000 Theobroma cacao HOM05D004793 ORTHO05D004423 6.1e-15 84.7 144 43.1
CiPaw.09G105400 Carya illinoinensis HOM05D004793 ORTHO05D004423 3.0e-14 82.4 158 41.8
CiPaw.10G079700 Carya illinoinensis HOM05D004793 ORTHO05D004423 5.7e-13 78.2 146 42.5
Duzib138G1142 Durio zibethinus HOM05D004793 ORTHO05D004423 7.4e-13 77.8 141 40.4
Eucgr.D01438 Eucalyptus grandis HOM05D004793 ORTHO05D004423 9.7e-13 77.4 145 41.4
Nn1g03234 Nelumbo nucifera HOM05D004793 ORTHO05D004423 9.7e-13 77.4 140 42.9
Thecc.07G019600 Theobroma cacao HOM05D004793 ORTHO05D004423 1.7e-12 76.6 141 43.3
Gohir.A07G190700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 6.3e-12 74.7 145 39.3
CANSAT56G2188 Cannabis sativa HOM05D004793 ORTHO05D004423 1.1e-11 73.9 171 38.0
Thecc.06G236700 Theobroma cacao HOM05D004793 ORTHO05D004423 1.4e-11 73.6 149 44.3
CSS0022938 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 2.4e-11 72.8 150 40.7
Cpa.g.sc2750.2 Carica papaya HOM05D004793 ORTHO05D004423 2.4e-11 72.8 141 44.7
Gohir.D07G197000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.4e-11 72.8 145 38.6
Gorai.001G220800 Gossypium raimondii HOM05D004793 ORTHO05D004423 2.4e-11 72.8 145 38.6
CSS0021588 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 3.1e-11 72.4 146 39.0
Ciclev10017072m.g Citrus clementina HOM05D004793 ORTHO05D004423 3.1e-11 72.4 98 53.1
CiPaw.11G201300 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.0e-11 71.2 141 41.1
RcHm_v2.0_Chr5g0000811 Rosa chinensis HOM05D020126 ORTHO05D004423 7.0e-11 71.2 166 40.4
arahy.Tifrunner.gnm1.ann1.TPLS1U Arachis hypogaea HOM05D004793 ORTHO05D004423 1.2e-10 70.5 152 42.8
arahy.Tifrunner.gnm1.ann1.I085MR Arachis hypogaea HOM05D004793 ORTHO05D038859 1.6e-10 70.1 170 37.1
Manes.03G138300 Manihot esculenta HOM05D004793 ORTHO05D004423 1.6e-10 70.1 141 39.0
Rhsim13G0143200 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.6e-10 70.1 142 37.3
arahy.Tifrunner.gnm1.ann1.QXLV0V Arachis hypogaea HOM05D004793 ORTHO05D004423 2.0e-10 69.7 152 42.1
CiPaw.12G136200 Carya illinoinensis HOM05D004793 ORTHO05D004423 2.0e-10 69.7 141 40.4
Duzib192G0740 Durio zibethinus HOM05D004793 ORTHO05D004423 2.0e-10 69.7 151 41.1
Cpa.g.sc211.5 Carica papaya HOM05D004793 ORTHO05D004423 3.5e-10 68.9 149 40.3
Hma1.2p1_1825F.1_g304390 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 3.5e-10 68.9 141 37.6
Prupe.3G201300 Prunus persica HOM05D004793 ORTHO05D004423 5.9e-10 68.2 141 41.1
Hma1.2p1_0133F.1_g061430 Hydrangea macrophylla HOM05D004793 ORTHO05D004423 7.7e-10 67.8 141 36.9
Eucgr.E03889 Eucalyptus grandis HOM05D004793 ORTHO05D004423 1.7e-09 66.6 145 37.9
Aqoxy4G02224 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 2.2e-09 66.2 143 41.3
Duzib170G0463 Durio zibethinus HOM05D004793 ORTHO05D004423 2.9e-09 65.9 139 39.6
Duzib170G0743 Durio zibethinus HOM05D004793 ORTHO05D004423 2.9e-09 65.9 139 39.6
COL.COLO4_08493 Corchorus olitorius HOM05D004793 ORTHO05D004423 3.8e-09 65.5 145 40.0
Gorai.010G188500 Gossypium raimondii HOM05D004793 ORTHO05D004423 3.8e-09 65.5 158 38.6
Manes.13G062900 Manihot esculenta HOM05D004793 ORTHO05D004423 6.5e-09 64.7 145 39.3
Sed0019930 Sechium edule HOM05D028401 ORTHO05D004423 6.5e-09 64.7 150 38.7
Aqoxy1G04226 Aquilegia oxysepala HOM05D004793 ORTHO05D004423 8.5e-09 64.3 143 39.2
Ciclev10017917m.g Citrus clementina HOM05D004793 ORTHO05D004423 8.5e-09 64.3 147 38.1
CsaV3_7G018540 Cucumis sativus L. HOM05D004793 ORTHO05D004423 8.5e-09 64.3 140 35.7
Rhsim04G0014600 Rhododendron simsii HOM05D004793 ORTHO05D004423 1.1e-08 63.9 142 40.8
Cfa020226 Carpinus fangiana HOM05D004793 ORTHO05D004423 1.5e-08 63.5 140 38.6
Gohir.D06G161500 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.5e-08 63.5 158 37.3
LjContig00081g0018270 Lotus japonicus HOM05D004793 ORTHO05D004423 1.5e-08 63.5 143 41.3
Manes.15G062700 Manihot esculenta HOM05D004793 ORTHO05D004423 1.5e-08 63.5 140 40.7
Sabra14G0125700 Salix brachista HOM05D004793 ORTHO05D004423 1.5e-08 63.5 146 36.3
CSS0020838 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.9e-08 63.2 145 37.2
CSS0047668 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.9e-08 63.2 145 37.2
FAN14G5076 Fragaria x ananassa HOM05D004793 ORTHO05D004423 1.9e-08 63.2 143 40.6
QL08p028591 Quercus lobata HOM05D004793 ORTHO05D004423 2.5e-08 62.8 143 37.1
Atru.chr6.3360 Acer truncatum HOM05D004793 ORTHO05D004423 3.2e-08 62.4 146 40.4
Glyma.14G007800 Glycine max HOM05D004793 ORTHO05D004423 3.2e-08 62.4 142 38.0
CSS0013569 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 4.2e-08 62.0 139 38.8
Gohir.D01G074100 Gossypium hirsutum HOM05D004793 ORTHO05D004423 4.2e-08 62.0 140 40.0
Gohir.D13G138400 Gossypium hirsutum HOM05D004793 ORTHO05D004423 5.5e-08 61.6 140 37.9
Gorai.013G155000 Gossypium raimondii HOM05D004793 ORTHO05D004423 5.5e-08 61.6 140 37.9
Lsat_1_v5_gn_7_13860 Lactuca sativa HOM05D004793 ORTHO05D004423 5.5e-08 61.6 155 34.8
CiPaw.03G278900 Carya illinoinensis HOM05D004793 ORTHO05D004423 7.2e-08 61.2 144 38.2
Haze_09795 Corylus avellana HOM05D004793 ORTHO05D004423 7.2e-08 61.2 140 37.9
FvH4_6g41090 Fragaria vesca HOM05D004793 ORTHO05D004423 7.2e-08 61.2 143 39.9
Medtr5g097300 Medicago truncatula HOM05D004793 ORTHO05D004423 7.2e-08 61.2 141 38.3
Prupe.4G234900 Prunus persica HOM05D004793 ORTHO05D004423 7.2e-08 61.2 143 39.2
FAN21G2945 Fragaria x ananassa HOM05D020126 ORTHO05D004423 1.2e-07 60.5 161 39.1
Sed0007585 Sechium edule HOM05D004793 ORTHO05D004423 1.2e-07 60.5 140 33.6
TPR.G1320 Trifolium pratense HOM05D004793 ORTHO05D004423 1.2e-07 60.5 143 35.7
Gohir.A06G155000 Gossypium hirsutum HOM05D004793 ORTHO05D004423 1.6e-07 60.1 155 36.8
Potri.011G086300 Populus trichocarpa HOM05D004793 ORTHO05D004423 1.6e-07 60.1 108 36.1
ClCG09G021090 Citrullus lanatus HOM05D004793 ORTHO05D004423 2.1e-07 59.7 140 34.3
Gohir.A01G087700 Gossypium hirsutum HOM05D004793 ORTHO05D004423 2.1e-07 59.7 140 39.3
Manes.12G061300 Manihot esculenta HOM05D004793 ORTHO05D004423 2.1e-07 59.7 144 34.0
FvH4_3g00600 Fragaria vesca HOM05D020126 ORTHO05D004423 2.7e-07 59.3 165 37.6
RcHm_v2.0_Chr2g0156651 Rosa chinensis HOM05D004793 ORTHO05D004423 3.6e-07 58.9 143 39.2
Ca_06456_v3 Cicer arietinum L. HOM05D004793 ORTHO05D004423 4.7e-07 58.5 145 37.2
MSTRG.7149 Avicennia marina HOM05D004793 ORTHO05D004423 8.0e-07 57.8 142 34.5
Ciclev10010582m.g Citrus clementina HOM05D004793 ORTHO05D004423 1.0e-06 57.4 127 37.0
Cc09_g00630 Coffea canephora HOM05D000222 ORTHO05D003997 1.0e-06 57.4 112 35.7
Lj2P260T34 Lonicera japonica HOM05D004793 ORTHO05D004423 1.0e-06 57.4 156 37.2
arahy.Tifrunner.gnm1.ann1.FQ33KH Arachis hypogaea HOM05D004793 ORTHO05D038859 1.4e-06 57.0 168 35.1
DCAR_030858 Daucus carota HOM05D004793 ORTHO05D004423 1.4e-06 57.0 135 38.5
Glyma.02G305500 Glycine max HOM05D004793 ORTHO05D004423 1.4e-06 57.0 144 36.8
Psat2g004520 Pisum sativum HOM05D004793 ORTHO05D004423 1.4e-06 57.0 145 38.6
CSS0019001 Camellia sinensis var. sinensis HOM05D004793 ORTHO05D004423 1.8e-06 56.6 145 35.9
PGR142G2586 Punica granatum HOM05D004793 ORTHO05D004423 4.0e-06 55.5 140 37.1
Actinidia21442 Actinidia chinensis HOM05D004793 ORTHO05D004423 8.8e-06 54.3 143 37.1
Oeu063642.1 Olea europaea HOM05D004793 ORTHO05D004423 8.8e-06 54.3 140 34.3
SGA_v2.0_scaffold7G03722 Striga asiatica HOM05D026462 ORTHO05D004423 8.8e-06 54.3 126 37.3


User provided reference genes

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