Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G004000 Glycine max HOM05D007037 ORTHO05D006691 9.9e-32 139.4 67 100.0
Phvul.003G079400 Phaseolus vulgaris HOM05D007037 ORTHO05D006691 4.0e-17 90.9 70 68.6
Glyma.17G012900 Glycine max HOM05D007037 ORTHO05D006691 5.3e-17 90.5 70 68.6
Glyma.07G261100 Glycine max HOM05D007037 ORTHO05D006691 6.4e-15 83.6 70 64.3
Lalb_Chr07g0177181 Lupinus albus HOM05D007037 ORTHO05D006691 1.1e-14 82.8 65 61.5
Ca_21080_v3 Cicer arietinum L. HOM05D007037 ORTHO05D006691 2.4e-14 81.6 68 60.3
Lj4g0019440 Lotus japonicus HOM05D007037 ORTHO05D006691 2.4e-14 81.6 69 60.9
Lalb_Chr13g0304241 Lupinus albus HOM05D007037 ORTHO05D006691 2.4e-14 81.6 65 63.1
TPR.G37004 Trifolium pratense HOM05D007037 ORTHO05D006691 7.1e-14 80.1 64 64.1
Medtr4g132230 Medicago truncatula HOM05D007037 ORTHO05D006691 2.1e-13 78.6 67 56.7
Medtr2g023440 Medicago truncatula HOM05D007037 ORTHO05D006691 6.0e-13 77.0 80 53.8
Psat4g006560 Pisum sativum HOM05D007037 ORTHO05D006691 3.9e-12 74.3 68 55.9
TPR.G13436 Trifolium pratense HOM05D007037 ORTHO05D006691 5.1e-12 73.9 80 52.5
Thecc.06G221700 Theobroma cacao HOM05D007037 ORTHO05D006691 8.7e-12 73.2 80 47.5
Duzib192G0147 Durio zibethinus HOM05D007037 ORTHO05D006691 1.1e-11 72.8 78 48.7
Gohir.A05G170900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.9e-11 72.0 79 48.1
Gorai.009G179200 Gossypium raimondii HOM05D007037 ORTHO05D006691 1.9e-11 72.0 79 49.4
arahy.Tifrunner.gnm1.ann1.CZMF37 Arachis hypogaea HOM05D007037 ORTHO05D006691 2.5e-11 71.6 87 52.9
CiPaw.09G092600 Carya illinoinensis HOM05D007037 ORTHO05D006691 2.5e-11 71.6 81 45.7
QL05p073032 Quercus lobata HOM05D007037 ORTHO05D006691 2.5e-11 71.6 79 46.8
arahy.Tifrunner.gnm1.ann1.98H95S Arachis hypogaea HOM05D007037 ORTHO05D006691 3.3e-11 71.2 88 52.3
TAR624G1029 Trochodendron aralioides HOM05D007037 ORTHO05D006691 4.3e-11 70.9 86 45.3
RcHm_v2.0_Chr5g0002881 Rosa chinensis HOM05D007037 ORTHO05D006691 7.4e-11 70.1 79 45.6
MD10G1322200 Malus domestica HOM05D007037 ORTHO05D006691 9.6e-11 69.7 80 46.2
Gohir.D05G173900 Gossypium hirsutum HOM05D007037 ORTHO05D006691 1.3e-10 69.3 79 48.1
CSS0026389 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 1.6e-10 68.9 81 48.1
Ciclev10018055m.g Citrus clementina HOM05D007037 ORTHO05D006691 2.1e-10 68.6 68 48.5
Lj6g0006723 Lotus japonicus HOM05D007037 ORTHO05D006691 2.1e-10 68.6 77 53.2
Oeu025269.1 Olea europaea HOM05D007037 ORTHO05D006691 2.1e-10 68.6 79 43.0
Prupe.4G019700 Prunus persica HOM05D007037 ORTHO05D006691 2.1e-10 68.6 80 45.0
Eucgr.E04050 Eucalyptus grandis HOM05D007037 ORTHO05D006691 3.7e-10 67.8 79 45.6
MD05G1347800 Malus domestica HOM05D007037 ORTHO05D006691 6.2e-10 67.0 80 43.8
Cc09_g01610 Coffea canephora HOM05D007037 ORTHO05D006691 8.2e-10 66.6 77 41.6
COL.COLO4_00342 Corchorus olitorius HOM05D007037 ORTHO05D006691 8.2e-10 66.6 79 44.3
FAN25G2740 Fragaria x ananassa HOM05D007037 ORTHO05D006691 8.2e-10 66.6 78 44.9
Dinv13899 Davidia involucrata HOM05D001191 ORTHO05D000979 1.1e-09 66.2 80 43.8
Hma1.2p1_0749F.1_g212630 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.1e-09 66.2 77 41.6
Hma1.2p1_0749F.1_g212635 Hydrangea macrophylla HOM05D007037 ORTHO05D006691 1.1e-09 66.2 77 41.6
FAN21G2981 Fragaria x ananassa HOM05D001191 ORTHO05D000979 1.4e-09 65.9 79 44.3
vmacro23211 Vaccinium macrocarpon HOM05D007037 ORTHO05D006691 1.8e-09 65.5 78 43.6
CSS0006945 Camellia sinensis var. sinensis HOM05D007037 ORTHO05D006691 2.4e-09 65.1 78 43.6
Manes.16G006400 Manihot esculenta HOM05D007037 ORTHO05D006691 3.1e-09 64.7 81 45.7
DCAR_008156 Daucus carota HOM05D007037 ORTHO05D006691 4.0e-09 64.3 79 40.5
CsaV3_6G049020 Cucumis sativus L. HOM05D007037 ORTHO05D006691 6.9e-09 63.5 77 45.5
Nitab4.5_0009030g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 6.9e-09 63.5 79 36.7
Nitab4.5_0000005g0340 Nicotiana tabacum HOM05D007037 ORTHO05D006691 9.0e-09 63.2 79 36.7
Potri.004G013601 Populus trichocarpa HOM05D007037 ORTHO05D006691 9.0e-09 63.2 74 43.2
THA.LOC104823525 Tarenaya hassleriana HOM05D007037 ORTHO05D006691 9.0e-09 63.2 61 54.1
Atru.chr10.2236 Acer truncatum HOM05D007037 ORTHO05D006691 1.5e-08 62.4 75 44.0
Manes.01G159201 Manihot esculenta HOM05D007037 ORTHO05D006691 1.5e-08 62.4 81 44.4
FvH4_3g01970 Fragaria vesca HOM05D007037 ORTHO05D006691 2.0e-08 62.0 79 43.0
Nitab4.5_0005074g0010 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.6e-08 61.6 78 38.5
Sp1g10350 Schrenkiella parvula HOM05D001191 ORTHO05D000979 2.6e-08 61.6 65 50.8
Peaxi162Scf00331g00119 Petunia axillaris HOM05D007037 ORTHO05D006691 4.5e-08 60.8 80 37.5
Thhalv10009555m.g Eutrema salsugineum HOM05D001191 ORTHO05D000979 5.8e-08 60.5 69 46.4
BcaC05g25043 Brassica carinata HOM05D001191 ORTHO05D000979 7.6e-08 60.1 65 52.3
CARHR012050 Cardamine hirsuta HOM05D007037 ORTHO05D006691 7.6e-08 60.1 64 46.9
ECA234G0681 Erigeron canadensis HOM05D007037 ORTHO05D006691 7.6e-08 60.1 76 38.2
ClCG01G021940 Citrullus lanatus HOM05D007037 ORTHO05D006691 1.0e-07 59.7 77 44.2
Potri.011G004400 Populus trichocarpa HOM05D007037 ORTHO05D006691 1.0e-07 59.7 75 41.3
Sed0008683 Sechium edule HOM05D007037 ORTHO05D006691 1.3e-07 59.3 77 42.9
AL2G13860 Arabidopsis lyrata HOM05D007037 ORTHO05D006691 1.7e-07 58.9 57 52.6
AT1G11740 Arabidopsis thaliana HOM05D001191 ORTHO05D000979 1.7e-07 58.9 64 46.9
AT1G62045 Arabidopsis thaliana HOM05D007037 ORTHO05D006691 1.7e-07 58.9 57 52.6
Lsat_1_v5_gn_4_60821 Lactuca sativa HOM05D007037 ORTHO05D006691 1.7e-07 58.9 77 42.9
Nitab4.5_0002827g0030 Nicotiana tabacum HOM05D007037 ORTHO05D006691 2.2e-07 58.5 78 35.9
Carub.0001s1138 Capsella rubella HOM05D007037 ORTHO05D006691 2.9e-07 58.2 64 45.3
AL1G22910 Arabidopsis lyrata HOM05D001191 ORTHO05D000979 3.8e-07 57.8 64 45.3
C05p09860 Brassica napus HOM05D007037 ORTHO05D006691 3.8e-07 57.8 65 50.8
Rhsim13G0153300 Rhododendron simsii HOM05D007037 ORTHO05D006691 3.8e-07 57.8 79 43.0
Sed0010286 Sechium edule HOM05D007037 ORTHO05D006691 3.8e-07 57.8 67 47.8
PGSC0003DMG400016450 Solanum tuberosum HOM05D007037 ORTHO05D006691 3.8e-07 57.8 82 37.8
EL10Ac8g20067 Beta vulgaris HOM05D007037 ORTHO05D006691 6.5e-07 57.0 66 45.5
Sopen02g011150 Solanum pennellii HOM05D007037 ORTHO05D006691 6.5e-07 57.0 72 36.1
Cfa000214 Carpinus fangiana HOM05D007037 ORTHO05D006691 8.4e-07 56.6 81 37.0
A06p08290 Brassica napus HOM05D007037 ORTHO05D006691 1.4e-06 55.8 65 46.2
Carub.0002s0297 Capsella rubella HOM05D007037 ORTHO05D006691 1.4e-06 55.8 57 52.6
Sabra11G0003500 Salix brachista HOM05D007037 ORTHO05D006691 1.4e-06 55.8 67 46.3
SalBow8G3366 Salvia bowleyana HOM05D007037 ORTHO05D006691 1.4e-06 55.8 60 50.0
Sopen02g025300 Solanum pennellii HOM05D007037 ORTHO05D006691 1.4e-06 55.8 82 36.6
Haze_06807 Corylus avellana HOM05D007037 ORTHO05D006691 1.9e-06 55.5 81 37.0
CARHR050140 Cardamine hirsuta HOM05D007037 ORTHO05D006691 3.2e-06 54.7 57 50.9
CiPaw.10G071700 Carya illinoinensis HOM05D007037 ORTHO05D006691 5.5e-06 53.9 81 38.3
Nn1g07147 Nelumbo nucifera HOM05D009550 ORTHO05D006691 9.3e-06 53.1 49 55.1


User provided reference genes

Program Settings