Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 1.8e-37 158.7 76 100.0
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.8e-37 158.7 76 100.0
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 8.9e-37 156.4 76 98.7
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 7.5e-36 153.3 76 96.1
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 1.0e-32 142.9 76 90.8
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 8.6e-32 139.8 76 88.2
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 1.5e-31 139.0 76 84.2
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 3.3e-31 137.9 76 86.8
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 3.3e-31 137.9 76 86.8
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 9.5e-31 136.3 76 84.2
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 1.1e-29 132.9 76 80.3
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 1.1e-29 132.9 76 81.6
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 1.1e-29 132.9 76 82.9
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 8.9e-29 129.8 76 78.9
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 9.8e-28 126.3 76 76.3
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.3e-27 125.9 76 75.0
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.7e-27 125.6 76 76.3
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.7e-27 125.6 76 76.3
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 2.2e-27 125.2 76 80.3
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 2.2e-27 125.2 76 72.4
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 2.9e-27 124.8 76 73.7
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 4.9e-27 124.0 76 75.0
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 6.4e-27 123.6 76 75.0
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 6.4e-27 123.6 76 71.1
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 8.3e-27 123.2 76 75.0
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 1.1e-26 122.9 76 75.0
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.4e-26 122.5 76 73.7
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 1.4e-26 122.5 76 73.7
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 1.4e-26 122.5 76 71.1
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.4e-26 122.5 76 72.4
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 1.9e-26 122.1 76 71.1
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.9e-26 122.1 76 72.4
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.4e-26 121.7 76 71.1
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.4e-26 121.7 76 71.1
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.2e-26 121.3 76 71.1
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.2e-26 121.3 76 71.1
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 3.2e-26 121.3 76 73.7
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 3.2e-26 121.3 76 73.7
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 4.1e-26 120.9 76 68.4
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 4.1e-26 120.9 76 69.7
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 4.1e-26 120.9 76 73.7
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 4.1e-26 120.9 76 73.7
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 5.4e-26 120.6 76 71.1
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.0e-26 120.2 76 71.1
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.0e-26 120.2 76 71.1
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 7.0e-26 120.2 76 69.7
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 9.2e-26 119.8 76 72.4
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 9.2e-26 119.8 76 72.4
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.2e-25 119.4 76 69.7
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.6e-25 119.0 76 71.1
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.6e-25 119.0 76 71.1
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.6e-25 119.0 76 71.1
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 2.0e-25 118.6 76 69.7
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 2.0e-25 118.6 76 69.7
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 2.0e-25 118.6 76 68.4
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 2.7e-25 118.2 76 68.4
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 2.7e-25 118.2 76 68.4
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 4.6e-25 117.5 76 67.1
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 6.0e-25 117.1 76 68.4
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 6.0e-25 117.1 76 69.7
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 7.8e-25 116.7 76 68.4
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 1.0e-24 116.3 76 68.4
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 1.7e-24 115.5 76 68.4
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.7e-24 115.5 76 65.8
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.7e-24 115.5 75 66.7
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 2.3e-24 115.2 76 68.4
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 2.3e-24 115.2 76 67.1
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 2.3e-24 115.2 76 64.5
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 3.9e-24 114.4 76 65.8
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 5.0e-24 114.0 76 68.4
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 5.0e-24 114.0 76 65.8
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 6.6e-24 113.6 76 68.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 6.6e-24 113.6 76 65.8
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 6.6e-24 113.6 76 68.4
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 8.6e-24 113.2 76 69.7
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 8.6e-24 113.2 76 67.1
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 8.6e-24 113.2 76 65.8
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 8.6e-24 113.2 76 71.1
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 1.1e-23 112.8 76 67.1
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.5e-23 112.5 76 65.8
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 2.5e-23 111.7 76 65.8
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 3.3e-23 111.3 76 65.8
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.3e-23 110.9 76 65.8
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 4.3e-23 110.9 76 64.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 5.6e-23 110.5 76 64.5
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 7.3e-23 110.2 76 65.8
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.2e-22 109.4 77 64.9
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 1.6e-22 109.0 76 63.2
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 2.1e-22 108.6 76 64.5
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 2.1e-22 108.6 76 64.5
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 2.8e-22 108.2 76 61.8
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.8e-22 108.2 76 64.5
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 2.8e-22 108.2 77 67.5
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 3.6e-22 107.8 76 61.8
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 3.6e-22 107.8 76 61.8
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 3.6e-22 107.8 76 61.8
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.7e-22 107.5 76 64.5
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 4.7e-22 107.5 77 67.5
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 6.2e-22 107.1 76 63.2
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 8.1e-22 106.7 76 61.8
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.4e-21 105.9 76 63.2
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-21 105.9 76 63.2
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.4e-21 105.9 76 63.2
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.4e-21 105.9 76 65.8
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 1.8e-21 105.5 77 63.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 3.1e-21 104.8 76 64.5
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 8.9e-21 103.2 68 64.7
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 2.6e-20 101.7 77 59.7
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-19 98.2 76 60.5
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 3.7e-19 97.8 76 60.5
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 4.9e-19 97.4 77 62.3
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 8.3e-19 96.7 76 59.2
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 8.3e-19 96.7 68 63.2
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 1.1e-18 96.3 76 57.9
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 1.4e-18 95.9 77 58.4
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 1.4e-18 95.9 77 58.4
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.4e-18 95.9 77 58.4
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 1.4e-18 95.9 77 58.4
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.4e-18 95.9 77 58.4
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 3.2e-18 94.7 77 58.4
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.1e-18 94.4 76 53.9
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 4.1e-18 94.4 76 56.6
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 5.4e-18 94.0 68 58.8
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 9.2e-18 93.2 76 55.3
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 4.6e-17 90.9 77 57.1
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 4.6e-17 90.9 77 57.1
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 4.6e-17 90.9 77 57.1
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 4.6e-17 90.9 77 57.1
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 4.6e-17 90.9 77 57.1
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 4.6e-17 90.9 77 57.1
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 6.0e-17 90.5 76 60.5
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 7.8e-17 90.1 70 55.7
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.6e-16 87.0 62 61.3
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 8.6e-16 86.7 91 47.3
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 2.5e-15 85.1 63 60.3
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 2.5e-15 85.1 76 53.9
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 4.3e-15 84.3 54 64.8
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 5.6e-15 84.0 76 53.9
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 9.5e-15 83.2 60 63.3
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 2.8e-14 81.6 79 51.9
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 6.2e-14 80.5 54 66.7
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.8e-13 79.0 65 60.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.2e-11 72.0 63 54.0
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 2.2e-11 72.0 45 64.4
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 4.9e-11 70.9 51 58.8
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 2.1e-09 65.5 39 76.9
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 6.0e-09 63.9 76 40.8
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 1.5e-07 59.3 32 75.0
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 7.3e-07 57.0 78 37.2
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 2.1e-06 55.5 43 60.5
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.6e-06 54.7 32 68.8


User provided reference genes

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