Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G365700 Glycine max HOM05D004693 ORTHO05D005545 2.7e-135 485.3 242 100.0
Glyma.18G296600 Glycine max HOM05D004693 ORTHO05D005545 2.3e-126 455.7 242 93.0
Phvul.008G005900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 1.2e-114 416.8 250 84.0
VMungo1383G0350 Vigna mungo HOM05D004693 ORTHO05D005545 7.5e-114 414.1 250 82.4
Phvul.007G143200 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 9.2e-112 407.1 250 83.2
Lj1g0002546 Lotus japonicus HOM05D004693 ORTHO05D005545 3.5e-103 378.6 242 75.6
Ca_04048_v3 Cicer arietinum L. HOM05D004693 ORTHO05D005545 8.3e-97 357.5 244 76.2
Medtr7g007280 Medicago truncatula HOM05D004693 ORTHO05D005545 5.4e-96 354.8 244 76.2
Psat3g205360 Pisum sativum HOM05D004693 ORTHO05D005545 1.2e-95 353.6 244 74.2
arahy.Tifrunner.gnm1.ann1.GG98DF Arachis hypogaea HOM05D004693 ORTHO05D005545 1.3e-94 350.1 247 71.7
arahy.Tifrunner.gnm1.ann1.INX0GQ Arachis hypogaea HOM05D004693 ORTHO05D005545 1.3e-94 350.1 247 71.7
TPR.G9726 Trifolium pratense HOM05D004693 ORTHO05D005545 1.1e-93 347.1 244 73.0
Glyma.19G047800 Glycine max HOM05D004693 ORTHO05D005545 9.9e-90 334.0 252 71.0
Lalb_Chr17g0335881 Lupinus albus HOM05D004693 ORTHO05D005545 7.1e-88 327.8 249 69.9
Medtr6g018550 Medicago truncatula HOM05D004693 ORTHO05D005545 3.3e-85 318.9 245 68.2
Lalb_Chr21g0317811 Lupinus albus HOM05D004693 ORTHO05D005545 9.6e-85 317.4 247 66.0
Medtr6g025680 Medicago truncatula HOM05D004693 ORTHO05D005545 2.1e-84 316.2 244 67.6
Lj2g0008970 Lotus japonicus HOM05D004693 ORTHO05D005545 6.0e-79 298.1 245 65.7
TPR.G32451 Trifolium pratense HOM05D004693 ORTHO05D005545 6.6e-78 294.7 245 65.3
Ciclev10012575m.g Citrus clementina HOM05D004693 ORTHO05D005545 7.3e-77 291.2 235 64.3
GSVIVG01031023001 Vitis vinifera HOM05D004693 ORTHO05D005545 1.3e-76 290.4 248 60.9
Prupe.5G053500 Prunus persica HOM05D004693 ORTHO05D005545 1.6e-76 290.0 240 63.3
CANSAT78G0919 Cannabis sativa HOM05D004693 ORTHO05D005545 2.1e-76 289.7 243 61.7
MD00G1132400 Malus domestica HOM05D004693 ORTHO05D005545 6.2e-76 288.1 242 62.8
Potri.004G099500 Populus trichocarpa HOM05D004693 ORTHO05D005545 6.2e-76 288.1 248 59.7
Manes.02G068600 Manihot esculenta HOM05D004693 ORTHO05D005545 8.1e-76 287.7 248 60.1
RcHm_v2.0_Chr7g0206351 Rosa chinensis HOM05D004693 ORTHO05D005545 2.4e-75 286.2 244 62.3
Atru.chr1.1699 Acer truncatum HOM05D004693 ORTHO05D005545 1.2e-74 283.9 240 60.4
Actinidia15883 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.3e-73 280.4 236 63.1
Hma1.2p1_1109F.1_g257990 Hydrangea macrophylla HOM05D004693 ORTHO05D005545 1.7e-73 280.0 227 61.7
Dinv33946 Davidia involucrata HOM05D004693 ORTHO05D005545 2.2e-73 279.6 206 68.4
TAR629G3320 Trochodendron aralioides HOM05D004693 ORTHO05D005545 2.2e-73 279.6 211 66.4
MD09G1253000 Malus domestica HOM05D004693 ORTHO05D005545 6.4e-73 278.1 250 58.0
CsaV3_3G020700 Cucumis sativus L. HOM05D004693 ORTHO05D005545 8.4e-73 277.7 237 61.2
FvH4_5g20670 Fragaria vesca HOM05D004693 ORTHO05D005545 8.4e-73 277.7 241 60.6
TWI77G0167 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 5.4e-72 275.0 249 59.0
ClCG05G011670 Citrullus lanatus HOM05D004693 ORTHO05D005545 7.1e-72 274.6 237 61.2
MD06G1045700 Malus domestica HOM05D004693 ORTHO05D005545 1.2e-71 273.9 239 60.3
TWI53G0853 Tripterygium wilfordii HOM05D004693 ORTHO05D005545 4.6e-71 271.9 248 57.7
Sabra17G0095200 Salix brachista HOM05D004693 ORTHO05D005545 7.9e-71 271.2 233 58.8
TAR371G1203 Trochodendron aralioides HOM05D004693 ORTHO05D005545 1.9e-69 266.5 232 60.3
Prupe.3G157500 Prunus persica HOM05D004693 ORTHO05D005545 2.5e-69 266.2 241 59.3
FAN13G1234 Fragaria x ananassa HOM05D004693 ORTHO05D005545 5.6e-69 265.0 271 54.6
Thecc.04G133900 Theobroma cacao HOM05D004693 ORTHO05D005545 1.3e-68 263.8 245 56.7
vmacro05556 Vaccinium macrocarpon HOM05D004693 ORTHO05D005545 1.6e-68 263.5 246 58.1
Sed0027829 Sechium edule HOM05D004693 ORTHO05D005545 1.4e-67 260.4 237 59.5
Lj2A442G45 Lonicera japonica HOM05D004693 ORTHO05D005545 1.8e-67 260.0 215 60.0
PGR004G1354 Punica granatum HOM05D004693 ORTHO05D005545 3.1e-67 259.2 184 69.0
A02p13930 Brassica napus HOM05D004693 ORTHO05D005545 5.3e-67 258.5 187 67.4
BraA02t06454Z Brassica rapa HOM05D004693 ORTHO05D005545 5.3e-67 258.5 187 67.4
Gorai.008G055600 Gossypium raimondii HOM05D004693 ORTHO05D005545 9.0e-67 257.7 248 56.0
Gohir.A12G053800 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.2e-66 257.3 248 56.0
Gohir.D12G052500 Gossypium hirsutum HOM05D004693 ORTHO05D005545 1.5e-66 256.9 248 56.0
Eucgr.F02496 Eucalyptus grandis HOM05D004693 ORTHO05D005545 5.8e-66 255.0 241 53.5
Lsat_1_v5_gn_3_79761 Lactuca sativa HOM05D004693 ORTHO05D005545 5.8e-66 255.0 230 59.1
Nitab4.5_0001217g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 5.8e-66 255.0 243 53.9
BcaC03g14797 Brassica carinata HOM05D004693 ORTHO05D005545 1.0e-65 254.2 189 66.1
C02p22440 Brassica napus HOM05D004693 ORTHO05D005545 1.0e-65 254.2 189 66.1
BolC2t08398H Brassica oleracea HOM05D004693 ORTHO05D005545 1.3e-65 253.8 189 66.1
CARHR059530 Cardamine hirsuta HOM05D004693 ORTHO05D005545 1.3e-65 253.8 221 57.9
QL02p051402 Quercus lobata HOM05D004693 ORTHO05D005545 1.3e-65 253.8 178 71.3
Sed0024744 Sechium edule HOM05D004693 ORTHO05D005545 1.3e-65 253.8 228 60.5
PGSC0003DMG400024184 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.3e-65 253.8 216 59.7
HanXRQChr12g0376541 Helianthus annuus HOM05D004693 ORTHO05D005545 1.7e-65 253.4 229 59.0
Solyc02g063170.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.7e-65 253.4 216 60.2
Sopen02g030740 Solanum pennellii HOM05D004693 ORTHO05D005545 1.7e-65 253.4 243 54.7
Nn4g23871 Nelumbo nucifera HOM05D004693 ORTHO05D005545 2.9e-65 252.7 242 55.8
Sp5g22010 Schrenkiella parvula HOM05D004693 ORTHO05D005545 3.8e-65 252.3 191 63.9
PSO478G2919 Papaver somniferum HOM05D004693 ORTHO05D005545 6.5e-65 251.5 201 64.2
Sopen02g014240 Solanum pennellii HOM05D004693 ORTHO05D005545 6.5e-65 251.5 216 60.2
Aa31LG2G3480 Aethionema arabicum HOM05D004693 ORTHO05D005545 8.4e-65 251.1 233 55.8
Carub.0002s1337 Capsella rubella HOM05D004693 ORTHO05D005545 1.9e-64 250.0 191 63.9
Potri.017G114900 Populus trichocarpa HOM05D004693 ORTHO05D005545 1.9e-64 250.0 210 61.4
ECA246G3075 Erigeron canadensis HOM05D004693 ORTHO05D005545 2.5e-64 249.6 236 56.4
Thhalv10019078m.g Eutrema salsugineum HOM05D004693 ORTHO05D005545 5.5e-64 248.4 235 55.7
PSO017G3734 Papaver somniferum HOM05D004693 ORTHO05D005545 5.5e-64 248.4 201 63.2
THA.LOC104805567 Tarenaya hassleriana HOM05D004693 ORTHO05D005545 5.5e-64 248.4 241 56.8
DCAR_017191 Daucus carota HOM05D004693 ORTHO05D005545 1.6e-63 246.9 234 57.3
Nn3g17869 Nelumbo nucifera HOM05D004693 ORTHO05D005545 1.6e-63 246.9 183 65.6
PGSC0003DMG401026407 Solanum tuberosum HOM05D004693 ORTHO05D005545 1.6e-63 246.9 245 54.7
Peaxi162Scf00501g00318 Petunia axillaris HOM05D004693 ORTHO05D005545 2.7e-63 246.1 203 60.1
Sed0014747 Sechium edule HOM05D004693 ORTHO05D005545 3.5e-63 245.7 228 58.8
MSTRG.15294 Avicennia marina HOM05D004693 ORTHO05D005545 4.6e-63 245.4 207 58.5
Nitab4.5_0004398g0030 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.9e-63 244.6 233 51.9
CAN.G225.4 Capsicum annuum HOM05D004693 ORTHO05D005545 1.0e-62 244.2 246 53.3
AT1G67080 Arabidopsis thaliana HOM05D004693 ORTHO05D005545 1.3e-62 243.8 198 59.1
Solyc02g086050.3 Solanum lycopersicum HOM05D004693 ORTHO05D005545 1.3e-62 243.8 239 54.0
Actinidia36320 Actinidia chinensis HOM05D004693 ORTHO05D005545 1.8e-62 243.4 175 70.9
BcaB05g24236 Brassica carinata HOM05D004693 ORTHO05D005545 1.8e-62 243.4 189 63.0
DCAR_025914 Daucus carota HOM05D004693 ORTHO05D005545 1.8e-62 243.4 177 67.2
Oeu010266.2 Olea europaea HOM05D004693 ORTHO05D005545 3.0e-62 242.7 179 67.0
AL2G25440 Arabidopsis lyrata HOM05D004693 ORTHO05D005545 8.7e-62 241.1 200 61.5
Sabra04G0080500 Salix brachista HOM05D004693 ORTHO05D005545 1.9e-61 240.0 246 53.7
Cc07_g08830 Coffea canephora HOM05D004693 ORTHO05D005545 4.3e-61 238.8 247 52.6
ATR1125G077 Amborella trichopoda HOM05D004693 ORTHO05D005545 5.7e-61 238.4 176 65.3
Ah.16g101760 Amaranthus hybridus HOM05D004693 ORTHO05D005545 9.6e-61 237.7 172 70.3
AUR62009000 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.3e-60 237.3 148 77.0
AUR62023302 Chenopodium quinoa HOM05D004693 ORTHO05D005545 1.6e-60 236.9 148 76.4
MSTRG.23575 Avicennia marina HOM05D004693 ORTHO05D005545 4.8e-60 235.3 212 57.5
Hund13716 Selenicereus undatus HOM05D004693 ORTHO05D005545 3.1e-59 232.6 175 66.3
Migut.H00217 Erythranthe guttata HOM05D004693 ORTHO05D005545 2.6e-58 229.6 235 54.9
SalBow3G4509 Salvia bowleyana HOM05D004693 ORTHO05D005545 2.2e-57 226.5 160 68.8
SGA_v2.0_scaffold115G32108 Striga asiatica HOM05D000286 ORTHO05D000170 6.5e-57 224.9 175 64.0
CAN.G625.24 Capsicum annuum HOM05D004693 ORTHO05D005545 1.1e-56 224.2 225 52.4
COL.COLO4_09328 Corchorus olitorius HOM05D004693 ORTHO05D005545 1.9e-56 223.4 134 79.9
HPP92_021861 Vanilla planifolia HOM05D004693 ORTHO05D005545 3.2e-56 222.6 235 49.8
SalBow5G5330 Salvia bowleyana HOM05D004693 ORTHO05D005545 4.2e-56 222.2 200 60.5
Migut.L00317 Erythranthe guttata HOM05D004693 ORTHO05D005545 1.2e-55 220.7 142 73.9
Zm00001eb335080 Zea mays HOM05D004693 ORTHO05D005545 1.2e-55 220.7 144 71.5
Nitab4.5_0000912g0240 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.6e-55 220.3 159 69.8
Nitab4.5_0000659g0050 Nicotiana tabacum HOM05D004693 ORTHO05D005545 7.9e-55 218.0 146 71.9
VMungo0464G1881 Vigna mungo HOM05D004693 ORTHO05D005545 7.9e-55 218.0 202 63.9
Os01g0128300 Oryza sativa ssp. japonica HOM05D004693 ORTHO05D005545 5.1e-54 215.3 140 72.9
unitig_32.g11889 Utricularia gibba HOM05D004693 ORTHO05D005545 6.7e-54 214.9 184 58.2
unitig_748.g8751 Utricularia gibba HOM05D004693 ORTHO05D005545 6.7e-54 214.9 155 66.5
MELO3C023805.2 Cucumis melo HOM05D004693 ORTHO05D005545 2.5e-53 213.0 129 79.8
Zm00001eb125470 Zea mays HOM05D004693 ORTHO05D005545 2.5e-53 213.0 140 70.0
Psat1g081400 Pisum sativum HOM05D004693 ORTHO05D005545 6.3e-52 208.4 191 62.3
Nitab4.5_0002207g0070 Nicotiana tabacum HOM05D004693 ORTHO05D005545 1.4e-51 207.2 201 52.7
EL10Ac2g04567 Beta vulgaris HOM05D004693 ORTHO05D005545 9.0e-51 204.5 182 60.4
Solyc03g034240.4 Solanum lycopersicum HOM05D004693 ORTHO05D005545 3.4e-50 202.6 180 55.6
Sopen03g007020 Solanum pennellii HOM05D004693 ORTHO05D005545 4.5e-50 202.2 231 47.2
PGSC0003DMG402019589 Solanum tuberosum HOM05D004693 ORTHO05D005545 5.9e-50 201.8 180 56.1
SEGI_37456 Sequoiadendron giganteum HOM05D004693 ORTHO05D005545 1.3e-49 200.7 140 65.7
Aqoxy3G00271 Aquilegia oxysepala HOM05D004693 ORTHO05D005545 2.5e-48 196.4 143 67.8
Eucgr.F02495 Eucalyptus grandis HOM05D004693 ORTHO05D005545 4.6e-47 192.2 153 61.4
Pp3c12_21540 Physcomitrium patens HOM05D004693 ORTHO05D005545 3.0e-46 189.5 145 60.7
HanXRQChr15g0471501 Helianthus annuus HOM05D004693 ORTHO05D005545 1.5e-45 187.2 193 54.9
Mapoly0134s0007 Marchantia polymorpha HOM05D004693 ORTHO05D005545 9.7e-45 184.5 243 43.6
Peaxi162Scf00394g00618 Petunia axillaris HOM05D004693 ORTHO05D005545 1.7e-44 183.7 249 42.6
Pp3c3_37490 Physcomitrium patens HOM05D004693 ORTHO05D005545 2.2e-44 183.3 137 62.0
SGA_v2.0_scaffold33G13498 Striga asiatica HOM05D004693 ORTHO05D005545 1.5e-42 177.2 199 51.3
AagrBONN_evm.TU.Sc2ySwM_362.1317 Anthoceros agrestis HOM05D004693 ORTHO05D005545 5.9e-42 175.3 140 58.6
Phvul.004G065900 Phaseolus vulgaris HOM05D004693 ORTHO05D005545 7.7e-42 174.9 167 59.9
SMO356G0314 Selaginella moellendorffii HOM05D004693 ORTHO05D005545 1.4e-40 170.6 139 55.4
Duzib133G0419 Durio zibethinus HOM05D004693 ORTHO05D005545 9.4e-40 167.9 248 41.1
Cpa.g.sc282.10 Carica papaya HOM05D004693 ORTHO05D005545 1.6e-39 167.2 171 53.2
HPP92_000177 Vanilla planifolia HOM05D004693 ORTHO05D005545 1.6e-39 167.2 198 46.0
CiPaw.04G042100 Carya illinoinensis HOM05D000286 ORTHO05D000170 1.3e-36 157.5 142 61.3
Nitab4.5_0002207g0120 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.4e-35 153.3 208 40.4
FAN18G0638 Fragaria x ananassa HOM05D000077 ORTHO05D005545 7.0e-35 151.8 144 57.6
CDE12G0456 Ceratophyllum demersum HOM05D001541 ORTHO05D001465 1.5e-32 144.1 183 45.9
MD06G1045600 Malus domestica HOM05D004693 ORTHO05D005545 9.7e-29 131.3 159 49.7
Peaxi162Scf00205g00220 Petunia axillaris HOM05D004693 ORTHO05D005545 1.3e-25 120.9 125 52.0
AagrBONN_evm.TU.Sc2ySwM_362.1343 Anthoceros agrestis HOM05D004693 ORTHO05D005545 3.4e-21 106.3 79 63.3
MCO01G364 Micromonas commoda HOM05D004693 ORTHO05D005545 2.0e-18 97.1 171 31.6
PRCOL_00000715 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 4.5e-18 95.9 144 36.8
MCO02G342 Micromonas commoda HOM05D004693 ORTHO05D005545 3.6e-15 86.3 131 34.4
VMungo0251G1321 Vigna mungo HOM05D000154 ORTHO05D000092 3.0e-14 83.2 83 57.8
Cre03.g207000 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 3.4e-13 79.7 151 33.8
Cre06.g255300 Chlamydomonas reinhardtii HOM05D004693 ORTHO05D005545 7.5e-13 78.6 152 30.9
PRCOL_00000440 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 3.5e-10 69.7 152 32.2
PRCOL_00005350 Prasinoderma coloniale HOM05D004693 ORTHO05D005545 2.3e-09 67.0 142 27.5
QL02p051406 Quercus lobata HOM05D004693 ORTHO05D005545 1.9e-08 63.9 89 38.2
Nitab4.5_0007808g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 3.3e-08 63.2 81 40.7
MCO03G104 Micromonas commoda HOM05D004693 ORTHO05D005545 2.1e-07 60.5 114 29.8
Nitab4.5_0009855g0020 Nicotiana tabacum HOM05D004693 ORTHO05D005545 2.1e-07 60.5 81 44.4


User provided reference genes

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