Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G364400 Glycine max HOM05D005061 ORTHO05D006001 2.0e-87 325.9 179 100.0
Glyma.18G297700 Glycine max HOM05D005061 ORTHO05D006001 1.9e-74 282.7 179 89.9
Psat6g003280 Pisum sativum HOM05D005061 ORTHO05D006001 2.0e-55 219.5 184 66.8
TPR.G26387 Trifolium pratense HOM05D005061 ORTHO05D006001 5.0e-54 214.9 184 65.8
Lalb_Chr01g0000091 Lupinus albus HOM05D005061 ORTHO05D006001 1.4e-53 213.4 172 68.6
TPR.G1371 Trifolium pratense HOM05D005061 ORTHO05D006001 1.6e-52 209.9 184 64.7
Lj1g0023949 Lotus japonicus HOM05D005061 ORTHO05D006001 1.1e-50 203.8 180 64.4
Lj1g0014719 Lotus japonicus HOM05D005061 ORTHO05D006001 1.9e-50 203.0 180 64.4
Medtr1g025570 Medicago truncatula HOM05D005061 ORTHO05D006001 1.3e-49 200.3 179 63.1
Gohir.D10G140500 Gossypium hirsutum HOM05D005061 ORTHO05D006001 3.8e-46 188.7 175 61.1
Phvul.008G004900 Phaseolus vulgaris HOM05D005061 ORTHO05D006001 5.0e-46 188.3 179 64.8
Prupe.1G159300 Prunus persica HOM05D005061 ORTHO05D006001 5.0e-46 188.3 181 59.7
COL.COLO4_20183 Corchorus olitorius HOM05D005061 ORTHO05D006001 1.4e-45 186.8 178 59.6
Gorai.011G156100 Gossypium raimondii HOM05D005061 ORTHO05D006001 2.1e-44 183.0 169 61.5
Manes.10G081400 Manihot esculenta HOM05D005061 ORTHO05D006001 1.8e-43 179.9 170 61.2
Cpa.g.sc170.49 Carica papaya HOM05D005061 ORTHO05D006001 2.3e-43 179.5 160 58.8
Manes.02G208300 Manihot esculenta HOM05D005061 ORTHO05D006001 2.3e-43 179.5 174 60.3
PGR042G2541 Punica granatum HOM05D005061 ORTHO05D006001 1.7e-41 173.3 175 56.6
TAR624G0493 Trochodendron aralioides HOM05D002455 ORTHO05D006001 2.8e-41 172.6 161 60.9
Gohir.A10G126200 Gossypium hirsutum HOM05D005061 ORTHO05D006001 8.2e-41 171.0 175 56.6
TAR636G2803 Trochodendron aralioides HOM05D005061 ORTHO05D006001 8.2e-41 171.0 180 56.7
Cpa.g.sc150.53 Carica papaya HOM05D005061 ORTHO05D006001 1.1e-40 170.6 167 57.5
Ca_04063_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.1e-40 170.6 184 55.4
Ca_04069_v3 Cicer arietinum L. HOM05D005061 ORTHO05D006001 1.1e-40 170.6 184 55.4
Psat3g206160 Pisum sativum HOM05D005061 ORTHO05D006001 1.1e-40 170.6 181 57.5
Thhalv10004918m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 3.1e-40 169.1 172 55.2
MD14G1080700 Malus domestica HOM05D005061 ORTHO05D006001 5.3e-40 168.3 181 54.1
FAN17G0047 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.9e-40 167.9 179 56.4
MD12G1086100 Malus domestica HOM05D005061 ORTHO05D006001 9.1e-40 167.5 181 54.7
CSS0003459 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 2.6e-39 166.0 183 53.6
Carub.0008s0903 Capsella rubella HOM05D005061 ORTHO05D006001 3.4e-39 165.6 167 55.1
Cc03_g08040 Coffea canephora HOM05D005061 ORTHO05D006001 3.4e-39 165.6 169 55.6
FAN07G0218 Fragaria x ananassa HOM05D005061 ORTHO05D006001 4.5e-39 165.2 182 57.1
Dinv38211 Davidia involucrata HOM05D005061 ORTHO05D006001 7.7e-39 164.5 195 51.8
BcaC06g30707 Brassica carinata HOM05D005061 ORTHO05D006001 1.7e-38 163.3 167 53.3
Duzib212G0867 Durio zibethinus HOM05D005061 ORTHO05D006001 1.7e-38 163.3 174 55.7
AL8G22790 Arabidopsis lyrata HOM05D005061 ORTHO05D006001 2.9e-38 162.5 167 54.5
FAN22G0582 Fragaria x ananassa HOM05D005061 ORTHO05D006001 3.8e-38 162.2 181 55.2
FvH4_4g13570 Fragaria vesca HOM05D005061 ORTHO05D006001 6.5e-38 161.4 182 56.6
Medtr7g407030 Medicago truncatula HOM05D005061 ORTHO05D006001 6.5e-38 161.4 181 54.1
AT5G49210 Arabidopsis thaliana HOM05D005061 ORTHO05D006001 1.4e-37 160.2 167 53.9
Lj8A15T45 Lonicera japonica HOM05D005061 ORTHO05D006001 1.4e-37 160.2 177 52.5
Aa31LG11G8230 Aethionema arabicum HOM05D005061 ORTHO05D006001 1.9e-37 159.8 167 52.7
A06p38500 Brassica napus HOM05D005061 ORTHO05D006001 3.2e-37 159.1 168 53.6
RcHm_v2.0_Chr4g0414321 Rosa chinensis HOM05D005061 ORTHO05D006001 2.1e-36 156.4 179 52.0
BcaNung02589 Brassica carinata HOM05D005061 ORTHO05D006001 4.7e-36 155.2 168 53.0
C07p39760 Brassica napus HOM05D005061 ORTHO05D006001 4.7e-36 155.2 168 53.0
BraA06t26765Z Brassica rapa HOM05D005061 ORTHO05D006001 4.7e-36 155.2 168 53.0
CANSAT78G0571 Cannabis sativa HOM05D005061 ORTHO05D006001 6.1e-36 154.8 176 52.8
CARHR182460 Cardamine hirsuta HOM05D005061 ORTHO05D006001 7.9e-36 154.5 160 54.4
VMungo1383G0426 Vigna mungo HOM05D005061 ORTHO05D006001 7.9e-36 154.5 172 58.7
CDE04G1543 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 2.3e-35 152.9 163 52.8
Eucgr.G02600 Eucalyptus grandis HOM05D005061 ORTHO05D006001 5.1e-35 151.8 158 54.4
CDE07G0811 Ceratophyllum demersum HOM05D005061 ORTHO05D006001 1.1e-34 150.6 156 54.5
SGA_v2.0_scaffold128G34119 Striga asiatica HOM05D005061 ORTHO05D006001 1.5e-34 150.2 169 52.7
SGA_v2.0_scaffold90G27899 Striga asiatica HOM05D005061 ORTHO05D006001 2.6e-34 149.4 171 52.0
PSO675G5536 Papaver somniferum HOM05D005061 ORTHO05D006001 3.3e-34 149.1 150 53.3
QL07p041720 Quercus lobata HOM05D005061 ORTHO05D006001 7.4e-34 147.9 178 52.2
PSO541G4502 Papaver somniferum HOM05D005061 ORTHO05D006001 1.7e-33 146.7 150 52.7
HPP92_021062 Vanilla planifolia HOM05D005061 ORTHO05D006001 3.7e-33 145.6 156 53.8
Hma1.2p1_0383F.1_g140630 Hydrangea macrophylla HOM05D005061 ORTHO05D006001 4.8e-33 145.2 169 50.3
Solyc05g053730.3 Solanum lycopersicum HOM05D005061 ORTHO05D006001 6.3e-33 144.8 182 50.5
Sopen05g032210 Solanum pennellii HOM05D005061 ORTHO05D006001 6.3e-33 144.8 182 50.5
BcaC03g17706 Brassica carinata HOM05D005061 ORTHO05D006001 1.1e-32 144.1 168 50.0
C02p57130 Brassica napus HOM05D005061 ORTHO05D006001 1.1e-32 144.1 168 50.0
unitig_26.g9510 Utricularia gibba HOM05D005061 ORTHO05D006001 1.1e-32 144.1 172 52.3
ECA247G1905 Erigeron canadensis HOM05D005061 ORTHO05D006001 1.8e-32 143.3 180 49.4
Ciclev10005973m.g Citrus clementina HOM05D005061 ORTHO05D006001 5.3e-32 141.7 178 48.3
SalBow8G4870 Salvia bowleyana HOM05D005061 ORTHO05D006001 5.3e-32 141.7 171 50.9
PGSC0003DMG400015756 Solanum tuberosum HOM05D005061 ORTHO05D006001 5.3e-32 141.7 160 53.8
QL01p037004 Quercus lobata HOM05D005061 ORTHO05D006001 1.5e-31 140.2 156 52.6
Migut.G00717 Erythranthe guttata HOM05D005061 ORTHO05D006001 2.0e-31 139.8 182 46.2
Sp2g19580 Schrenkiella parvula HOM05D005061 ORTHO05D006001 4.5e-31 138.7 174 48.9
Atru.chr4.1296 Acer truncatum HOM05D005061 ORTHO05D006001 2.2e-30 136.3 180 47.2
arahy.Tifrunner.gnm1.ann1.B38FIW Arachis hypogaea HOM05D005061 ORTHO05D006001 5.0e-30 135.2 154 52.6
arahy.Tifrunner.gnm1.ann1.V03Z72 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.0e-30 135.2 154 52.6
HanXRQChr13g0420931 Helianthus annuus HOM05D005061 ORTHO05D006001 5.0e-30 135.2 155 51.0
Peaxi162Scf00423g00316 Petunia axillaris HOM05D005061 ORTHO05D006001 8.5e-30 134.4 158 53.8
Rhsim02G0060400 Rhododendron simsii HOM05D005061 ORTHO05D006001 8.5e-30 134.4 242 40.1
THA.LOC104808705 Tarenaya hassleriana HOM05D005061 ORTHO05D006001 1.1e-29 134.0 172 46.5
Os11g0148600 Oryza sativa ssp. japonica HOM05D005061 ORTHO05D006001 1.9e-29 133.3 167 47.9
BcaB07g34140 Brassica carinata HOM05D005061 ORTHO05D006001 3.2e-29 132.5 155 51.0
BraA02t08777Z Brassica rapa HOM05D005061 ORTHO05D006001 2.7e-28 129.4 168 47.6
EL10Ac9g22415 Beta vulgaris HOM05D005061 ORTHO05D006001 2.3e-27 126.3 163 46.6
A02p37930 Brassica napus HOM05D005061 ORTHO05D006001 5.2e-27 125.2 168 46.4
arahy.Tifrunner.gnm1.ann1.IKZ5YQ Arachis hypogaea HOM05D000225 ORTHO05D001595 1.1e-26 124.0 103 69.9
MSTRG.9809 Avicennia marina HOM05D005061 ORTHO05D006001 2.0e-26 123.2 169 46.7
Nitab4.5_0003502g0080 Nicotiana tabacum HOM05D005061 ORTHO05D006001 2.0e-26 123.2 157 49.7
Hund18997 Selenicereus undatus HOM05D005061 ORTHO05D006001 1.3e-25 120.6 156 46.2
BolC2t11785H Brassica oleracea HOM05D005061 ORTHO05D006001 2.2e-25 119.8 197 41.6
AUR62006500 Chenopodium quinoa HOM05D005061 ORTHO05D006001 3.7e-25 119.0 156 45.5
EL10Ac9g22416 Beta vulgaris HOM05D005061 ORTHO05D006001 1.1e-24 117.5 158 45.6
Thecc.04G199600 Theobroma cacao HOM05D005061 ORTHO05D006001 1.1e-24 117.5 174 44.8
GSVIVG01020921001 Vitis vinifera HOM05D005061 ORTHO05D006001 1.8e-24 116.7 170 43.5
Aqoxy1G01140 Aquilegia oxysepala HOM05D005061 ORTHO05D006001 3.1e-24 115.9 151 48.3
Migut.N00403 Erythranthe guttata HOM05D005061 ORTHO05D006001 3.1e-24 115.9 168 45.8
Zm00001eb092840 Zea mays HOM05D005061 ORTHO05D006001 3.1e-24 115.9 166 42.8
vmacro15554 Vaccinium macrocarpon HOM05D005061 ORTHO05D006001 9.1e-24 114.4 219 37.4
CAN.G765.25 Capsicum annuum HOM05D005061 ORTHO05D006001 3.5e-23 112.5 153 47.7
MSTRG.4232 Avicennia marina HOM05D005061 ORTHO05D006001 4.5e-23 112.1 179 39.7
AUR62025033 Chenopodium quinoa HOM05D005061 ORTHO05D006001 5.9e-23 111.7 187 41.7
DCAR_026627 Daucus carota HOM05D005061 ORTHO05D006001 6.5e-22 108.2 123 54.5
BcaB04g19598 Brassica carinata HOM05D005061 ORTHO05D006001 1.9e-21 106.7 167 41.9
BcaB07g34141 Brassica carinata HOM05D005061 ORTHO05D006001 1.9e-21 106.7 155 43.2
Atru.chr4.1292 Acer truncatum HOM05D005061 ORTHO05D006001 3.2e-21 105.9 113 52.2
MELO3C006306.2 Cucumis melo HOM05D005061 ORTHO05D006001 3.2e-21 105.9 176 41.5
arahy.Tifrunner.gnm1.ann1.SQKG7P Arachis hypogaea HOM05D005061 ORTHO05D006001 4.2e-21 105.5 103 62.1
arahy.Tifrunner.gnm1.ann1.FDW9Z4 Arachis hypogaea HOM05D005061 ORTHO05D006001 5.5e-21 105.1 166 42.8
Sed0002608 Sechium edule HOM05D005061 ORTHO05D006001 7.2e-21 104.8 168 39.9
Sc19g0007290 Simmondsia chinensis HOM05D005061 ORTHO05D006001 7.2e-21 104.8 169 39.1
arahy.Tifrunner.gnm1.ann1.16QZ2B Arachis hypogaea HOM05D001164 ORTHO05D026902 1.6e-20 103.6 86 74.4
Sabra16G0200700 Salix brachista HOM05D005061 ORTHO05D006001 2.1e-20 103.2 175 42.9
Oeu006186.1 Olea europaea HOM05D005061 ORTHO05D006001 2.7e-20 102.8 109 56.0
Potri.001G317300 Populus trichocarpa HOM05D005061 ORTHO05D006001 3.6e-20 102.4 175 42.9
BolC7t44502H Brassica oleracea HOM05D005061 ORTHO05D006001 8.0e-20 101.3 117 50.4
TWI34G0245 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 1.4e-19 100.5 180 41.7
SEGI_31023 Sequoiadendron giganteum HOM05D005061 ORTHO05D006001 5.2e-19 98.6 155 36.8
Nitab4.5_0002260g0170 Nicotiana tabacum HOM05D005061 ORTHO05D006001 6.8e-19 98.2 157 42.7
Haze_11630 Corylus avellana HOM05D005061 ORTHO05D006001 2.6e-18 96.3 183 39.9
FvH4_4g13580 Fragaria vesca HOM05D005061 ORTHO05D006001 1.3e-17 94.0 165 47.3
FAN12G1864 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.3e-17 94.0 165 47.3
arahy.Tifrunner.gnm1.ann1.KB0HQZ Arachis hypogaea HOM05D005061 ORTHO05D006001 6.3e-17 91.7 103 55.3
arahy.Tifrunner.gnm1.ann1.W60CWR Arachis hypogaea HOM05D005061 ORTHO05D006001 1.8e-16 90.1 125 50.4
Cfa014943 Carpinus fangiana HOM05D005061 ORTHO05D006001 5.4e-16 88.6 183 38.3
Dinv27216 Davidia involucrata HOM05D005061 ORTHO05D006001 7.0e-16 88.2 172 38.4
arahy.Tifrunner.gnm1.ann1.125U9W Arachis hypogaea HOM05D005061 ORTHO05D006001 2.7e-15 86.3 104 55.8
Oeu025020.1 Olea europaea HOM05D005061 ORTHO05D006001 7.7e-15 84.7 139 42.4
CsaV3_3G010880 Cucumis sativus L. HOM05D005061 ORTHO05D006001 1.0e-14 84.3 85 51.8
Ah.09g228330 Amaranthus hybridus HOM05D005061 ORTHO05D006001 1.7e-14 83.6 160 40.0
arahy.Tifrunner.gnm1.ann1.L4TH9M Arachis hypogaea HOM05D005061 ORTHO05D006001 8.5e-14 81.3 121 47.9
arahy.Tifrunner.gnm1.ann1.J1UTGX Arachis hypogaea HOM05D005061 ORTHO05D016631 2.5e-13 79.7 103 51.5
CSS0041532 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.2e-13 79.3 107 48.6
CSS0044809 Camellia sinensis var. sinensis HOM05D005061 ORTHO05D006001 3.2e-13 79.3 107 48.6
Actinidia23412 Actinidia chinensis HOM05D005061 ORTHO05D006001 7.2e-13 78.2 171 35.7
arahy.Tifrunner.gnm1.ann1.57E4K5 Arachis hypogaea HOM05D000877 ORTHO05D026902 2.1e-12 76.6 72 68.1
arahy.Tifrunner.gnm1.ann1.I6PPQF Arachis hypogaea HOM05D000877 ORTHO05D026902 4.7e-12 75.5 72 66.7
CiPaw.01G118900 Carya illinoinensis HOM05D005061 ORTHO05D006001 8.0e-12 74.7 180 36.1
TWI34G1372 Tripterygium wilfordii HOM05D005061 ORTHO05D006001 8.0e-12 74.7 175 36.0
Lsat_1_v5_gn_6_60821 Lactuca sativa HOM05D005061 ORTHO05D006001 2.0e-10 70.1 170 34.7
FAN12G0303 Fragaria x ananassa HOM05D005061 ORTHO05D006001 7.5e-10 68.2 67 61.2
arahy.Tifrunner.gnm1.ann1.02VCKU Arachis hypogaea HOM05D000115 ORTHO05D026902 1.3e-09 67.4 62 69.4
Lsat_1_v5_gn_2_46320 Lactuca sativa HOM05D005061 ORTHO05D006001 1.3e-09 67.4 170 35.9
arahy.Tifrunner.gnm1.ann1.MN077J Arachis hypogaea HOM05D030690 ORTHO05D006001 2.8e-09 66.2 57 73.7
FAN22G2287 Fragaria x ananassa HOM05D005061 ORTHO05D006001 2.8e-09 66.2 162 41.4
FAN07G1641 Fragaria x ananassa HOM05D005061 ORTHO05D006001 6.3e-09 65.1 165 40.0
Thhalv10009372m.g Eutrema salsugineum HOM05D005061 ORTHO05D006001 1.1e-08 64.3 63 46.0
FAN17G2161 Fragaria x ananassa HOM05D005061 ORTHO05D006001 1.8e-08 63.5 154 41.6
ATR0745G004 Amborella trichopoda HOM05D005061 ORTHO05D006001 4.1e-08 62.4 156 33.3
Sc19g0007210 Simmondsia chinensis HOM05D005061 ORTHO05D006001 1.0e-06 57.8 63 47.6
Lj3P401T12 Lonicera japonica HOM05D005061 ORTHO05D006001 5.0e-06 55.5 41 53.7
BolC9t53436H Brassica oleracea HOM05D005061 ORTHO05D006001 6.6e-06 55.1 47 57.4


User provided reference genes

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