Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 1.3e-129 466.5 240 100.0
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 2.0e-122 442.6 240 94.2
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 2.0e-114 416.0 239 88.7
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 1.6e-103 379.8 224 86.2
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.3e-94 350.1 235 74.9
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.3e-94 350.1 235 74.9
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 1.3e-94 350.1 234 75.6
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 2.9e-94 349.0 233 74.2
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 3.8e-94 348.6 238 75.6
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 1.5e-93 346.7 235 74.5
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 1.5e-93 346.7 235 74.5
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 5.2e-91 338.2 208 80.8
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 5.7e-90 334.7 230 74.3
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 7.0e-88 327.8 238 69.3
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 5.0e-86 321.6 230 68.7
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 5.0e-86 321.6 233 69.1
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 8.6e-86 320.9 230 67.8
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 1.1e-85 320.5 237 70.0
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 3.3e-85 318.9 237 66.7
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 3.3e-85 318.9 234 67.1
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 7.3e-85 317.8 242 66.5
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 2.1e-84 316.2 230 67.4
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 2.1e-84 316.2 237 67.5
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 2.8e-84 315.8 239 65.3
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 4.7e-84 315.1 236 69.5
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 4.7e-84 315.1 241 66.8
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 6.2e-84 314.7 237 65.8
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 1.4e-83 313.5 233 64.8
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.4e-83 313.5 239 66.1
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 1.8e-83 313.2 242 65.7
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 3.1e-83 312.4 242 63.6
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 5.2e-83 311.6 213 69.0
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.2e-82 310.5 233 67.4
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 2.0e-82 309.7 242 62.8
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 2.6e-82 309.3 239 65.7
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 4.4e-82 308.5 230 66.5
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 5.8e-82 308.1 236 66.1
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 5.8e-82 308.1 236 66.1
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 7.5e-82 307.8 233 63.9
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 9.8e-82 307.4 240 66.2
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 9.8e-82 307.4 231 63.6
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 9.8e-82 307.4 232 68.1
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 1.3e-81 307.0 237 63.7
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 1.3e-81 307.0 233 63.9
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 1.3e-81 307.0 233 63.9
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 1.7e-81 306.6 234 66.7
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 2.2e-81 306.2 231 64.1
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 3.7e-81 305.4 239 65.7
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 8.3e-81 304.3 242 63.2
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 8.3e-81 304.3 226 67.7
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 3.2e-80 302.4 226 66.4
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 3.2e-80 302.4 231 63.2
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 3.2e-80 302.4 239 67.8
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 4.1e-80 302.0 225 67.6
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 4.1e-80 302.0 234 66.7
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 4.1e-80 302.0 236 66.5
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 4.1e-80 302.0 232 65.1
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 4.1e-80 302.0 224 67.9
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 5.4e-80 301.6 240 64.2
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 5.4e-80 301.6 226 66.8
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 1.2e-79 300.4 233 67.8
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.6e-79 300.1 231 62.8
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 3.5e-79 298.9 234 63.7
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 4.6e-79 298.5 243 61.7
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 4.6e-79 298.5 230 62.2
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 7.8e-79 297.7 226 64.2
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 7.8e-79 297.7 234 61.5
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 7.8e-79 297.7 243 61.7
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 7.8e-79 297.7 225 63.6
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.3e-78 297.0 226 63.3
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 1.7e-78 296.6 231 63.6
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 3.9e-78 295.4 227 64.3
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 3.9e-78 295.4 236 61.9
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 5.0e-78 295.0 225 63.1
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 8.6e-78 294.3 236 61.4
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 8.6e-78 294.3 236 61.9
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 8.6e-78 294.3 225 63.6
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 3.3e-77 292.4 228 63.6
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 3.3e-77 292.4 204 67.6
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 4.3e-77 292.0 257 61.9
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 5.6e-77 291.6 238 61.3
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 5.6e-77 291.6 229 65.1
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 1.2e-76 290.4 222 65.8
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.2e-76 290.4 221 68.8
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 1.6e-76 290.0 226 62.4
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 8.1e-76 287.7 230 63.0
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 1.4e-75 287.0 222 65.8
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 1.2e-74 283.9 237 63.3
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 9.8e-74 280.8 231 62.3
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 4.1e-72 275.4 230 60.4
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 9.2e-72 274.2 380 42.9
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.7e-70 270.0 232 59.1
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 1.9e-69 266.5 231 61.9
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.1e-67 260.8 231 59.7
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 6.8e-67 258.1 199 65.3
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 8.9e-67 257.7 239 57.3
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 1.7e-57 226.9 195 61.5
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 7.1e-56 221.5 227 52.9
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.2e-55 220.7 189 61.4
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 6.6e-54 214.9 206 51.9
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.6e-52 210.3 137 75.2
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 4.8e-52 208.8 204 52.9
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 4.8e-52 208.8 199 53.8
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 1.1e-40 171.0 136 61.0
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 4.2e-40 169.1 235 43.0
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 3.8e-33 146.0 98 71.4
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 1.3e-30 137.5 113 61.1
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 9.0e-27 124.8 120 51.7
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.7e-25 120.6 78 78.2
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 2.2e-17 93.6 227 33.5
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 5.0e-09 65.9 153 34.0
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 2.7e-07 60.1 184 29.3


User provided reference genes

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