Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 2.8e-81 305.1 139 100.0
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 4.0e-75 284.6 139 92.1
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 5.0e-70 267.7 139 90.6
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 1.0e-67 260.0 139 87.8
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 1.3e-62 243.0 139 78.4
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 1.5e-61 239.6 138 79.0
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 1.9e-61 239.2 136 80.1
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.5e-61 238.8 133 79.7
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 4.2e-61 238.0 133 78.2
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 7.2e-61 237.3 133 77.4
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 7.2e-61 237.3 133 78.9
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 3.6e-60 235.0 133 78.2
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 8.0e-60 233.8 143 72.0
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 8.0e-60 233.8 133 76.7
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 4.0e-59 231.5 133 76.7
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 4.0e-59 231.5 133 74.4
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 4.0e-59 231.5 128 77.3
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 5.2e-59 231.1 133 75.2
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 5.2e-59 231.1 135 78.5
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 5.2e-59 231.1 136 77.2
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 8.8e-59 230.3 136 76.5
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.5e-58 229.6 142 72.5
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.5e-58 229.6 147 72.1
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 2.0e-58 229.2 142 71.8
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.0e-58 229.2 145 73.1
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 2.6e-58 228.8 120 82.5
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 4.4e-58 228.0 130 77.7
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 7.5e-58 227.3 150 68.7
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 9.8e-58 226.9 136 75.0
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 9.8e-58 226.9 120 82.5
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 9.8e-58 226.9 143 72.0
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.3e-57 226.5 141 76.6
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 1.7e-57 226.1 133 74.4
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 2.2e-57 225.7 135 70.4
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 2.8e-57 225.3 133 74.4
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 3.7e-57 224.9 120 79.2
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 3.7e-57 224.9 133 72.9
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.7e-57 224.9 147 68.7
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 4.9e-57 224.6 133 73.7
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 6.3e-57 224.2 127 73.2
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 8.3e-57 223.8 133 73.7
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.1e-56 223.4 123 75.6
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.4e-56 222.2 136 72.8
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.4e-56 222.2 133 72.9
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 3.1e-56 221.9 158 62.7
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.1e-56 221.9 124 77.4
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 4.1e-56 221.5 146 69.9
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 5.4e-56 221.1 136 72.8
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.4e-56 221.1 133 72.2
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 7.0e-56 220.7 144 70.1
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 9.1e-56 220.3 148 67.6
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 1.2e-55 219.9 120 76.7
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 1.6e-55 219.5 120 77.5
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.0e-55 219.2 135 72.6
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.0e-55 219.2 135 72.6
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 2.7e-55 218.8 151 66.9
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.7e-55 218.8 135 72.6
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 5.9e-55 217.6 146 67.8
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 7.7e-55 217.2 133 70.7
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 7.7e-55 217.2 133 70.7
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 7.7e-55 217.2 133 72.2
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 7.7e-55 217.2 154 61.0
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 1.3e-54 216.5 120 76.7
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.7e-54 216.1 137 67.9
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 2.3e-54 215.7 133 70.7
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 2.3e-54 215.7 133 70.7
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 2.9e-54 215.3 133 72.2
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 2.9e-54 215.3 119 75.6
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 3.8e-54 214.9 119 77.3
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 3.8e-54 214.9 133 70.7
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.8e-54 214.9 124 71.8
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.8e-54 214.9 124 71.8
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 5.0e-54 214.5 133 70.7
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 5.0e-54 214.5 133 69.9
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 6.6e-54 214.2 120 75.8
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 6.6e-54 214.2 120 75.8
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 8.6e-54 213.8 133 70.7
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 1.1e-53 213.4 133 69.9
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.1e-53 213.4 133 72.2
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 1.5e-53 213.0 133 69.9
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.9e-53 212.6 133 69.9
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 3.3e-53 211.8 144 66.7
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 3.3e-53 211.8 155 61.9
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 3.3e-53 211.8 133 70.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 3.3e-53 211.8 157 64.3
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 4.3e-53 211.5 133 69.2
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 5.6e-53 211.1 136 69.9
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 9.5e-53 210.3 153 64.1
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 9.5e-53 210.3 153 64.1
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-52 209.9 136 69.9
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 2.1e-52 209.1 134 69.4
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 2.1e-52 209.1 134 69.4
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 2.1e-52 209.1 134 69.4
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 2.1e-52 209.1 136 69.9
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 2.8e-52 208.8 115 76.5
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 4.7e-52 208.0 133 69.2
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 6.1e-52 207.6 136 69.1
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.4e-51 206.5 133 70.7
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 3.0e-51 205.3 155 60.6
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.0e-50 202.6 128 71.1
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 3.4e-50 201.8 140 65.7
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 5.7e-50 201.1 135 66.7
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 9.8e-50 200.3 138 65.2
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.7e-49 199.5 136 66.2
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.0e-46 188.0 113 69.9
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.0e-46 188.0 113 69.9
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 5.6e-45 184.5 156 55.8
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 9.5e-45 183.7 121 62.8
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 2.2e-41 172.6 96 75.0
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 3.7e-41 171.8 158 51.3
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 2.8e-36 155.6 146 49.3
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 1.4e-35 153.3 114 63.2
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 2.3e-35 152.5 125 53.6
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 8.9e-35 150.6 116 53.4
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 1.5e-34 149.8 116 51.7
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 2.0e-34 149.4 123 53.7
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 1.4e-32 143.3 87 72.4
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 3.5e-31 138.7 135 46.7
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 3.3e-29 132.1 69 78.3
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 4.4e-26 121.7 56 89.3
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 1.4e-24 116.7 55 81.8
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.9e-17 92.4 44 84.1
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 1.0e-14 84.0 102 44.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.0e-14 84.0 57 61.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.7e-14 83.2 54 66.7
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 3.9e-14 82.0 78 55.1
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 6.6e-14 81.3 79 51.9
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.1e-12 76.3 81 53.1
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 2.8e-12 75.9 40 75.0
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 3.1e-11 72.4 114 38.6
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 5.3e-11 71.6 72 45.8
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 1.5e-10 70.1 60 50.0
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 3.4e-10 68.9 94 41.5
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 4.4e-10 68.6 50 60.0
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.9e-10 67.4 59 49.2
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.9e-10 67.4 59 49.2
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.7e-09 66.6 44 68.2
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 3.8e-09 65.5 102 35.3
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.9e-09 65.1 60 46.7
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 7.9e-07 57.8 38 65.8
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.6e-06 54.7 46 50.0


User provided reference genes

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