Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G358832 Glycine max HOM05D003564 ORTHO05D028498 9.2e-56 219.9 107 100.0
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.5e-45 186.0 107 84.1
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 1.5e-45 186.0 107 84.1
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 1.9e-45 185.7 107 82.2
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 2.5e-45 185.3 107 82.2
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 4.3e-45 184.5 107 83.2
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 4.3e-45 184.5 107 80.4
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 7.3e-45 183.7 105 82.9
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 9.5e-45 183.3 107 81.3
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 1.2e-44 183.0 106 80.2
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 1.2e-44 183.0 106 82.1
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 1.6e-44 182.6 104 82.7
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.6e-44 182.6 106 82.1
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.6e-44 182.6 107 80.4
CAN.G311.70 Capsicum annuum HOM05D003564 ORTHO05D028498 2.1e-44 182.2 107 80.4
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 2.8e-44 181.8 106 81.1
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 2.8e-44 181.8 106 82.1
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 3.6e-44 181.4 106 81.1
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.6e-44 181.4 107 80.4
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.6e-44 181.4 107 80.4
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 4.7e-44 181.0 107 80.4
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 4.7e-44 181.0 106 82.1
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 4.7e-44 181.0 107 79.4
Cc03_g00630 Coffea canephora HOM05D003564 ORTHO05D028498 6.2e-44 180.6 107 79.4
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 6.2e-44 180.6 106 83.0
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 6.2e-44 180.6 107 81.3
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 6.2e-44 180.6 106 79.2
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 6.2e-44 180.6 107 80.4
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 8.1e-44 180.3 106 81.1
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 8.1e-44 180.3 106 81.1
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 8.1e-44 180.3 106 80.2
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 1.1e-43 179.9 107 81.3
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.1e-43 179.9 107 80.4
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 1.1e-43 179.9 106 80.2
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 1.4e-43 179.5 107 78.5
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 1.4e-43 179.5 106 79.2
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 1.8e-43 179.1 107 79.4
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 2.4e-43 178.7 107 76.6
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 2.4e-43 178.7 106 80.2
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 2.4e-43 178.7 106 81.1
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 2.4e-43 178.7 106 79.2
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 2.4e-43 178.7 107 78.5
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 2.4e-43 178.7 107 79.4
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 3.1e-43 178.3 106 79.2
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 3.1e-43 178.3 107 80.4
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 3.1e-43 178.3 106 81.1
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 4.0e-43 177.9 106 81.1
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 4.0e-43 177.9 104 81.7
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 5.2e-43 177.6 106 80.2
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 5.2e-43 177.6 107 78.5
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 5.2e-43 177.6 106 79.2
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 6.8e-43 177.2 107 78.5
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 6.8e-43 177.2 106 79.2
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 6.8e-43 177.2 106 80.2
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 8.9e-43 176.8 107 76.6
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 8.9e-43 176.8 106 78.3
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 8.9e-43 176.8 107 78.5
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 8.9e-43 176.8 107 78.5
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 1.2e-42 176.4 106 78.3
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 1.2e-42 176.4 106 78.3
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 1.2e-42 176.4 107 77.6
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 1.2e-42 176.4 102 82.4
Aqoxy6G00955 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 1.5e-42 176.0 107 77.6
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 1.5e-42 176.0 106 77.4
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 1.5e-42 176.0 107 77.6
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 1.5e-42 176.0 107 77.6
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 1.5e-42 176.0 107 78.5
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 1.5e-42 176.0 106 81.1
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.5e-42 176.0 107 79.4
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 2.0e-42 175.6 107 77.6
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 2.0e-42 175.6 107 77.6
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 2.6e-42 175.3 106 80.2
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 2.6e-42 175.3 107 77.6
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 3.4e-42 174.9 107 76.6
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 3.4e-42 174.9 106 76.4
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 3.4e-42 174.9 107 77.6
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 3.4e-42 174.9 106 80.2
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 3.4e-42 174.9 107 77.6
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 3.4e-42 174.9 107 77.6
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 4.4e-42 174.5 107 78.5
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 80.2
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 80.2
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 77.4
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 77.4
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 4.4e-42 174.5 106 77.4
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 4.4e-42 174.5 107 77.6
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 4.4e-42 174.5 107 78.5
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 5.8e-42 174.1 107 77.6
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 5.8e-42 174.1 107 77.6
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 5.8e-42 174.1 106 76.4
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 7.6e-42 173.7 107 77.6
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 7.6e-42 173.7 107 76.6
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 7.6e-42 173.7 103 78.6
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 9.9e-42 173.3 102 80.4
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 9.9e-42 173.3 106 79.2
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 1.3e-41 172.9 107 76.6
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 1.3e-41 172.9 106 77.4
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 1.3e-41 172.9 107 75.7
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.7e-41 172.6 106 76.4
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 2.2e-41 172.2 106 77.4
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 2.9e-41 171.8 106 76.4
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 2.9e-41 171.8 106 77.4
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 3.8e-41 171.4 106 78.3
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 3.8e-41 171.4 106 76.4
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 4.9e-41 171.0 106 76.4
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 4.9e-41 171.0 107 76.6
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 4.9e-41 171.0 106 75.5
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 6.4e-41 170.6 106 76.4
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 8.4e-41 170.2 106 75.5
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 8.4e-41 170.2 106 77.4
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 1.1e-40 169.9 106 78.3
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 1.9e-40 169.1 106 73.6
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 1.9e-40 169.1 104 76.0
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 1.9e-40 169.1 106 74.5
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.4e-40 168.7 103 74.8
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 3.2e-40 168.3 106 74.5
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 4.1e-40 167.9 107 72.9
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 5.4e-40 167.5 107 73.8
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.2e-39 166.4 103 73.8
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 1.6e-39 166.0 106 71.7
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 1.6e-39 166.0 106 72.6
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 1.6e-39 166.0 126 67.5
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 2.7e-39 165.2 98 77.6
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 3.5e-39 164.9 106 71.7
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 3.5e-39 164.9 106 70.8
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 3.5e-39 164.9 106 70.8
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 4.6e-39 164.5 106 71.7
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 4.6e-39 164.5 106 71.7
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 6.0e-39 164.1 106 70.8
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 6.0e-39 164.1 106 70.8
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 3.9e-38 161.4 106 74.5
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 5.1e-38 161.0 106 69.8
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 5.1e-38 161.0 106 69.8
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 6.6e-38 160.6 103 71.8
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 1.5e-37 159.5 103 71.8
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 1.9e-37 159.1 106 69.8
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 7.3e-37 157.1 107 70.1
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 2.8e-36 155.2 107 71.0
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 2.8e-36 155.2 107 67.3
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 8.1e-36 153.7 103 69.9
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 1.4e-35 152.9 107 68.2
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 4.4e-34 147.9 102 68.6
TAR365G0172 Trochodendron aralioides HOM05D003564 ORTHO05D028498 2.9e-33 145.2 120 62.5
Aqoxy2G02665 Aquilegia oxysepala HOM05D000882 ORTHO05D001142 6.4e-33 144.1 105 67.6
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 1.1e-32 143.3 85 76.5
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.2e-31 139.8 106 64.2
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.1e-31 139.0 106 63.2
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 3.9e-30 134.8 107 60.7
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 3.6e-28 128.3 82 78.0
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 4.0e-27 124.8 77 79.2
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 1.4e-24 116.3 104 52.9
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 1.6e-23 112.8 102 49.0
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 4.6e-23 111.3 100 53.0
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 1.5e-21 106.3 70 67.1
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 4.3e-21 104.8 83 62.7
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 1.9e-16 89.4 110 48.2
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 2.5e-13 79.0 107 46.7
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 9.6e-13 77.0 100 37.0
Haze_26210 Corylus avellana HOM05D003564 ORTHO05D005332 1.0e-09 67.0 58 51.7
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 1.4e-08 63.2 38 78.9


User provided reference genes

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