Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 1.6e-92 342.8 178 100.0
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 2.3e-80 302.4 178 90.4
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 1.5e-74 283.1 178 84.3
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 4.0e-72 275.0 178 82.6
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 2.8e-65 252.3 179 74.3
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 2.4e-61 239.2 179 72.6
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 3.2e-61 238.8 181 71.8
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 9.3e-61 237.3 179 72.1
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 8.1e-57 224.2 212 62.3
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 2.4e-48 196.1 183 59.0
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 5.3e-48 194.9 187 56.1
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 5.8e-47 191.4 179 62.6
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 2.2e-46 189.5 183 57.4
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 3.8e-46 188.7 180 57.8
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 3.8e-46 188.7 183 56.8
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 9.3e-45 184.1 179 59.2
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 1.6e-44 183.3 179 58.1
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 2.7e-44 182.6 180 57.8
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 2.7e-44 182.6 183 57.4
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 6.0e-44 181.4 179 57.5
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 7.9e-44 181.0 178 56.2
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 1.0e-43 180.6 178 57.3
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 3.0e-43 179.1 178 54.5
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 5.6e-42 174.9 182 56.0
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 5.6e-42 174.9 182 56.6
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 7.4e-42 174.5 143 65.7
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 1.6e-41 173.3 179 55.9
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 3.7e-41 172.2 182 56.0
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 1.8e-40 169.9 194 52.6
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 6.9e-40 167.9 182 54.9
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 2.0e-39 166.4 184 52.2
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 5.8e-39 164.9 178 53.9
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 1.3e-38 163.7 183 54.6
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 1.3e-38 163.7 103 81.6
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 1.7e-38 163.3 168 53.6
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 3.8e-38 162.2 181 52.5
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 8.4e-38 161.0 181 51.9
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 1.1e-37 160.6 150 58.7
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 1.1e-37 160.6 163 52.1
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 3.2e-37 159.1 149 60.4
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 4.2e-37 158.7 151 59.6
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 5.5e-37 158.3 186 50.0
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 7.1e-37 157.9 159 55.3
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 9.3e-37 157.5 171 52.6
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 1.2e-36 157.1 150 58.0
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 1.2e-36 157.1 160 55.0
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 1.6e-36 156.8 150 58.0
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 1.6e-36 156.8 149 56.4
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 2.1e-36 156.4 144 59.0
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 3.5e-36 155.6 151 58.9
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 3.5e-36 155.6 151 58.9
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 7.9e-36 154.5 152 57.9
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 1.0e-35 154.1 151 58.3
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.3e-35 153.7 151 57.6
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 1.8e-35 153.3 177 52.5
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 2.3e-35 152.9 176 50.0
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 2.3e-35 152.9 180 48.9
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 2.3e-35 152.9 189 47.1
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 5.1e-35 151.8 152 56.6
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 1.5e-34 150.2 149 58.4
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 3.3e-34 149.1 193 49.2
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.3e-33 147.1 150 55.3
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 1.6e-33 146.7 146 54.1
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 3.1e-32 142.5 150 54.0
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 4.1e-32 142.1 145 55.2
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 9.0e-32 141.0 134 60.4
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 1.2e-31 140.6 182 47.8
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 1.2e-31 140.6 141 54.6
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 2.0e-31 139.8 159 50.9
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 2.0e-31 139.8 168 46.4
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 5.0e-30 135.2 136 55.9
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 6.5e-30 134.8 116 59.5
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 2.5e-29 132.9 127 57.5
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 4.2e-29 132.1 102 63.7
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 7.2e-29 131.3 123 57.7
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 9.3e-29 131.0 118 59.3
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 3.6e-28 129.0 126 56.3
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 1.8e-27 126.7 178 44.4
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 2.3e-27 126.3 149 50.3
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 3.9e-27 125.6 230 39.6
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 6.7e-27 124.8 139 50.4
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 1.1e-26 124.0 206 41.7
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 4.3e-26 122.1 113 54.9
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 2.2e-25 119.8 125 54.4
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 6.3e-25 118.2 133 53.4
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 3.1e-24 115.9 131 48.1
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 1.5e-23 113.6 165 41.8
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 2.6e-23 112.8 113 52.2
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 2.6e-23 112.8 119 50.4
TPR.G23276 Trifolium pratense HOM05D000033 ORTHO05D007915 1.8e-19 100.1 84 64.3
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 4.1e-16 89.0 59 76.3
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 2.9e-14 82.8 115 43.5
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 1.4e-13 80.5 58 65.5
ClCG07G001710 Citrullus lanatus HOM05D007485 ORTHO05D009437 1.0e-11 74.3 101 43.6
Ca_22684_v3 Cicer arietinum L. HOM05D007485 ORTHO05D009437 1.8e-11 73.6 68 66.2
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 1.8e-11 73.6 126 41.3
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 4.4e-10 68.9 59 61.0
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 1.8e-08 63.5 99 43.4
Nitab4.5_0003180g0040 Nicotiana tabacum HOM05D007485 ORTHO05D009437 2.9e-06 56.2 136 35.3


User provided reference genes

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