Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 3.0e-307 1057.7 556 100.0
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 6.0e-284 980.3 555 91.9
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 3.5e-276 954.5 555 89.2
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 1.1e-266 922.9 544 90.4
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 7.7e-231 803.9 562 77.2
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.7e-230 802.7 547 79.2
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 1.3e-222 776.5 543 76.4
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 2.3e-219 765.8 556 75.4
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 7.5e-218 760.8 556 74.8
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 1.5e-210 736.5 562 71.9
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.6e-204 716.5 566 71.0
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 4.7e-204 714.9 556 70.0
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 6.2e-204 714.5 564 70.9
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 4.0e-203 711.8 562 69.8
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 6.8e-203 711.1 559 70.7
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.5e-202 709.9 563 70.7
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 1.3e-201 706.8 562 69.4
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 6.4e-201 704.5 562 69.8
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 8.4e-201 704.1 558 70.3
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 2.4e-200 702.6 562 69.6
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 4.1e-200 701.8 561 69.5
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 9.2e-200 700.7 562 70.1
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 1.7e-198 696.4 566 69.6
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 3.0e-198 695.7 567 69.5
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 5.1e-198 694.9 566 68.7
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 6.6e-198 694.5 566 70.0
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 6.6e-198 694.5 566 67.8
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 1.5e-197 693.3 557 69.1
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 3.3e-197 692.2 560 69.8
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.4e-195 686.0 563 67.0
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 3.1e-195 685.6 559 69.4
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 4.0e-195 685.3 572 68.2
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 2.0e-194 682.9 568 68.7
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 7.6e-194 681.0 560 68.2
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 9.9e-194 680.6 568 68.5
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 1.4e-192 676.8 562 67.4
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 9.3e-192 674.1 554 68.6
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 4.3e-189 665.2 554 65.9
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 6.2e-188 661.4 557 66.4
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 9.9e-186 654.1 566 66.3
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 2.2e-185 652.9 562 64.6
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 4.6e-183 645.2 564 66.0
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 3.9e-182 642.1 556 64.0
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 8.7e-182 641.0 564 64.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 5.6e-181 638.3 523 67.5
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.3e-177 627.1 562 65.5
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 1.7e-177 626.7 555 65.2
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 3.8e-177 625.5 649 58.4
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 4.9e-177 625.2 570 62.3
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 7.9e-175 617.8 611 57.9
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 1.0e-174 617.5 561 64.3
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 1.3e-174 617.1 562 64.1
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 3.9e-174 615.5 558 63.6
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 8.7e-174 614.4 557 62.7
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 8.7e-174 614.4 565 62.7
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 3.3e-173 612.5 559 63.1
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.3e-172 610.5 556 61.9
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 2.1e-172 609.8 562 63.7
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 2.1e-172 609.8 556 61.3
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 2.4e-171 606.3 557 61.2
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 5.3e-171 605.1 559 62.4
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 9.0e-171 604.4 556 61.2
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 1.5e-170 603.6 558 60.6
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.3e-169 600.5 615 59.5
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 1.9e-168 596.7 563 60.9
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 5.5e-168 595.1 576 62.3
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 7.9e-167 591.3 568 61.3
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.0e-166 590.9 569 60.8
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.9e-166 589.0 576 59.4
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 5.1e-166 588.6 576 60.2
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 5.7e-165 585.1 468 70.1
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 1.6e-164 583.6 563 59.0
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 2.1e-164 583.2 584 58.2
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 1.4e-163 580.5 576 59.4
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 4.5e-162 575.5 567 61.2
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 1.1e-160 570.9 559 60.1
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 5.5e-160 568.5 565 60.4
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 1.9e-157 560.1 570 58.6
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 8.2e-156 554.7 514 61.7
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 5.3e-155 552.0 558 59.0
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 2.0e-154 550.1 574 57.8
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.0e-154 550.1 578 59.2
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 4.5e-154 548.9 569 59.4
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 5.9e-154 548.5 573 58.8
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 7.7e-154 548.1 569 58.0
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 5.0e-153 545.4 568 58.8
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 8.5e-153 544.7 581 55.6
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.9e-152 543.5 702 48.9
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 4.6e-151 538.9 449 67.9
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 2.3e-150 536.6 701 48.4
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 3.3e-149 532.7 570 57.4
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 4.4e-149 532.3 568 57.4
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 2.2e-148 530.0 468 62.6
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 3.7e-148 529.3 564 57.6
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 4.1e-147 525.8 639 52.7
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 2.6e-146 523.1 565 56.1
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 3.0e-142 509.6 558 53.6
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 1.1e-141 507.7 561 56.5
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 1.5e-141 507.3 513 57.7
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 5.7e-141 505.4 569 55.5
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 5.7e-141 505.4 569 55.5
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 2.8e-140 503.1 569 55.4
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 3.7e-140 502.7 564 54.8
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 4.8e-140 502.3 573 54.5
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 4.1e-139 499.2 573 54.1
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.7e-129 467.2 571 49.2
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 3.8e-129 466.1 575 51.0
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 1.0e-126 458.0 439 62.4
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 2.7e-122 443.4 424 60.8
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 1.7e-121 440.7 570 48.9
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 1.9e-120 437.2 523 52.0
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 5.7e-117 425.6 583 46.8
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 6.6e-113 412.1 557 47.0
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 1.5e-112 411.0 390 59.7
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.8e-110 404.1 305 76.4
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 1.9e-91 340.9 559 40.6
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 2.7e-90 337.0 284 64.1
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 2.4e-86 323.9 552 39.7
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 1.1e-72 278.5 359 46.8
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.0e-65 255.4 501 38.3
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 8.4e-52 209.1 272 44.9
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 4.5e-45 186.8 464 34.9
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 1.1e-32 145.6 98 78.6
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.9e-28 131.0 154 56.5
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 3.3e-24 117.5 124 55.6
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 4.1e-22 110.5 89 64.0
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 1.5e-19 102.1 90 60.0
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.2e-16 92.4 176 30.7
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.0e-16 91.7 193 33.2
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.3e-16 90.9 197 29.9
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 3.1e-14 84.3 219 29.7
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 3.5e-13 80.9 82 56.1
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 7.7e-13 79.7 196 28.1
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 1.6e-10 72.0 62 62.9


User provided reference genes

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