Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G347200 Glycine max HOM05D008911 ORTHO05D010818 7.5e-153 543.9 290 100.0
Glyma.18G174000 Glycine max HOM05D008911 ORTHO05D010818 7.5e-68 261.5 293 54.9
Glyma.18G173900 Glycine max HOM05D008911 ORTHO05D010818 4.1e-66 255.8 293 54.3
Glyma.18G174100 Glycine max HOM05D008911 ORTHO05D010818 2.2e-64 250.0 293 57.3
Glyma.18G173700 Glycine max HOM05D008911 ORTHO05D010818 2.1e-62 243.4 294 51.7
Phvul.008G123933 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 1.3e-32 144.4 284 34.2
Phvul.011G108200 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 8.1e-30 135.2 223 39.9
arahy.Tifrunner.gnm1.ann1.FHHV9X Arachis hypogaea HOM05D008911 ORTHO05D010818 2.0e-28 130.6 117 56.4
arahy.Tifrunner.gnm1.ann1.QNC19D Arachis hypogaea HOM05D008911 ORTHO05D010818 2.9e-27 126.7 134 50.7
arahy.Tifrunner.gnm1.ann1.00CGR0 Arachis hypogaea HOM05D008911 ORTHO05D010818 3.8e-27 126.3 117 53.0
arahy.Tifrunner.gnm1.ann1.1WNZ6F Arachis hypogaea HOM05D008911 ORTHO05D010818 1.9e-26 124.0 117 53.0
Lj3g0024339 Lotus japonicus HOM05D008911 ORTHO05D010818 1.6e-25 120.9 309 31.4
Lalb_Chr00c01g0403771 Lupinus albus HOM05D008911 ORTHO05D010818 2.1e-25 120.6 192 36.5
arahy.Tifrunner.gnm1.ann1.LA96E9 Arachis hypogaea HOM05D008911 ORTHO05D010818 3.5e-25 119.8 299 33.1
arahy.Tifrunner.gnm1.ann1.368SCS Arachis hypogaea HOM05D008911 ORTHO05D010818 1.3e-24 117.9 118 49.2
Phvul.011G108400 Phaseolus vulgaris HOM05D008911 ORTHO05D010818 1.7e-24 117.5 218 37.6
arahy.Tifrunner.gnm1.ann1.KRWC22 Arachis hypogaea HOM05D008911 ORTHO05D010818 6.6e-24 115.5 118 47.5
Lj1g0019231 Lotus japonicus HOM05D008911 ORTHO05D010818 2.5e-23 113.6 123 48.0
arahy.Tifrunner.gnm1.ann1.32QDND Arachis hypogaea HOM05D008911 ORTHO05D010818 4.3e-23 112.8 118 46.6
Ca_22776_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 9.9e-20 101.7 157 40.8
Medtr0702s0020 Medicago truncatula HOM05D008911 ORTHO05D010818 1.3e-19 101.3 125 44.8
TPR.G15295 Trifolium pratense HOM05D008911 ORTHO05D010818 1.7e-19 100.9 153 38.6
Ca_22775_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 4.9e-19 99.4 298 31.5
Ca_07510_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 6.4e-19 99.0 136 40.4
Medtr0662s0020 Medicago truncatula HOM05D008911 ORTHO05D010818 1.1e-18 98.2 288 28.5
Ca_24129_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 1.9e-18 97.4 157 40.1
Ca_24128_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 2.4e-18 97.1 157 39.5
Medtr0702s0010 Medicago truncatula HOM05D008911 ORTHO05D010818 2.4e-18 97.1 166 36.7
Medtr4g039410 Medicago truncatula HOM05D016779 ORTHO05D010818 2.4e-18 97.1 298 29.2
Medtr8g081520 Medicago truncatula HOM05D008911 ORTHO05D010818 3.2e-18 96.7 292 27.7
arahy.Tifrunner.gnm1.ann1.I9F5AW Arachis hypogaea HOM05D008911 ORTHO05D010818 4.2e-18 96.3 113 44.2
Ca_24126_v3 Cicer arietinum L. HOM05D008911 ORTHO05D010818 4.2e-18 96.3 157 38.2
VMungo1383G1256 Vigna mungo HOM05D008911 ORTHO05D010818 1.2e-17 94.7 117 43.6
Medtr7g057460 Medicago truncatula HOM05D016779 ORTHO05D010818 1.6e-17 94.4 293 28.3
Medtr7g057480 Medicago truncatula HOM05D016779 ORTHO05D010818 1.6e-17 94.4 293 28.3
Medtr0637s0010 Medicago truncatula HOM05D016779 ORTHO05D010818 1.9e-15 87.4 300 27.0
arahy.Tifrunner.gnm1.ann1.A6C13D Arachis hypogaea HOM05D008911 ORTHO05D010818 3.3e-15 86.7 115 37.4
arahy.Tifrunner.gnm1.ann1.7Q90JW Arachis hypogaea HOM05D000336 ORTHO05D018477 3.6e-14 83.2 130 38.5
arahy.Tifrunner.gnm1.ann1.IH53PY Arachis hypogaea HOM05D008911 ORTHO05D010818 3.6e-14 83.2 76 44.7
Psat0s3118g0120 Pisum sativum HOM05D008911 ORTHO05D010818 1.4e-13 81.3 127 38.6
arahy.Tifrunner.gnm1.ann1.UZ271C Arachis hypogaea HOM05D002216 ORTHO05D002011 3.1e-13 80.1 152 35.5
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 6.9e-13 79.0 123 37.4
CSS0035401 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 1.5e-12 77.8 127 35.4
PGR031G1206 Punica granatum HOM05D000336 ORTHO05D000593 1.5e-12 77.8 122 37.7
Gohir.A05G151900 Gossypium hirsutum HOM05D000336 ORTHO05D000593 4.5e-12 76.3 115 40.0
Gohir.D05G154300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 4.5e-12 76.3 115 40.0
Gorai.009G158600 Gossypium raimondii HOM05D000336 ORTHO05D000593 4.5e-12 76.3 115 40.0
Glyma.13G222500 Glycine max HOM05D000336 ORTHO05D000593 9.9e-12 75.1 157 37.6
Potri.011G077100 Populus trichocarpa HOM05D000336 ORTHO05D000593 1.3e-11 74.7 152 35.5
Duzib160G0793 Durio zibethinus HOM05D000336 ORTHO05D000593 2.9e-11 73.6 120 37.5
Actinidia39543 Actinidia chinensis HOM05D000336 ORTHO05D000593 3.8e-11 73.2 126 33.3
COL.COLO4_22813 Corchorus olitorius HOM05D000336 ORTHO05D000593 3.8e-11 73.2 150 36.0
Dinv32307 Davidia involucrata HOM05D000336 ORTHO05D000593 3.8e-11 73.2 168 32.1
Dinv01258 Davidia involucrata HOM05D000336 ORTHO05D000593 6.4e-11 72.4 170 32.4
Atru.chr10.1457 Acer truncatum HOM05D000336 ORTHO05D000593 8.4e-11 72.0 121 39.7
Thecc.06G159500 Theobroma cacao HOM05D000336 ORTHO05D000593 8.4e-11 72.0 120 35.0
GSVIVG01021322001 Vitis vinifera HOM05D000336 ORTHO05D000593 8.4e-11 72.0 117 35.9
CSS0024579 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D000593 1.1e-10 71.6 160 31.9
Lj6g0004648 Lotus japonicus HOM05D000336 ORTHO05D000593 1.1e-10 71.6 122 37.7
Ciclev10014673m.g Citrus clementina HOM05D000336 ORTHO05D000593 1.4e-10 71.2 117 36.8
AL8G11800 Arabidopsis lyrata HOM05D000336 ORTHO05D000593 2.4e-10 70.5 119 39.5
arahy.Tifrunner.gnm1.ann1.973ZBX Arachis hypogaea HOM05D000336 ORTHO05D000593 2.4e-10 70.5 153 35.3
MELO3C007177.2 Cucumis melo HOM05D000336 ORTHO05D000593 3.2e-10 70.1 149 31.5
Hund17848 Selenicereus undatus HOM05D000336 ORTHO05D000593 3.2e-10 70.1 123 35.8
arahy.Tifrunner.gnm1.ann1.73019P Arachis hypogaea HOM05D000336 ORTHO05D000593 4.2e-10 69.7 153 35.3
ClCG01G024140 Citrullus lanatus HOM05D000336 ORTHO05D000593 4.2e-10 69.7 128 31.2
Duzib235G1112 Durio zibethinus HOM05D000336 ORTHO05D000593 4.2e-10 69.7 148 34.5
Glyma.15G089700 Glycine max HOM05D000336 ORTHO05D000593 5.4e-10 69.3 180 34.4
Gohir.D10G033100 Gossypium hirsutum HOM05D000336 ORTHO05D000593 9.3e-10 68.6 120 34.2
Potri.001G355300 Populus trichocarpa HOM05D000336 ORTHO05D000593 1.2e-09 68.2 121 34.7
VMungo0464G1084 Vigna mungo HOM05D008911 ORTHO05D010818 1.2e-09 68.2 74 47.3
Gohir.A10G032300 Gossypium hirsutum HOM05D000336 ORTHO05D000593 1.6e-09 67.8 120 34.2
Gorai.011G034900 Gossypium raimondii HOM05D000336 ORTHO05D000593 1.6e-09 67.8 120 34.2
TWI73G1232 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 1.6e-09 67.8 120 35.8
AT5G46550 Arabidopsis thaliana HOM05D000336 ORTHO05D000593 2.1e-09 67.4 145 37.2
Lalb_Chr12g0204811 Lupinus albus HOM05D000336 ORTHO05D000593 2.1e-09 67.4 126 35.7
ATR0763G091 Amborella trichopoda HOM05D000336 ORTHO05D000593 2.7e-09 67.0 120 33.3
Carub.0008s0137 Capsella rubella HOM05D000336 ORTHO05D000593 2.7e-09 67.0 141 34.8
CiPaw.10G098000 Carya illinoinensis HOM05D000336 ORTHO05D000593 2.7e-09 67.0 167 31.7
Prupe.4G072500 Prunus persica HOM05D000336 ORTHO05D000593 2.7e-09 67.0 116 35.3
Manes.15G116300 Manihot esculenta HOM05D000336 ORTHO05D000593 4.6e-09 66.2 119 34.5
CsaV3_6G051270 Cucumis sativus L. HOM05D000336 ORTHO05D000593 6.0e-09 65.9 149 30.9
Manes.17G063000 Manihot esculenta HOM05D000336 ORTHO05D000593 6.0e-09 65.9 171 32.2
AagrBONN_evm.TU.Sc2ySwM_117.2756 Anthoceros agrestis HOM05D000336 ORTHO05D000593 7.9e-09 65.5 159 31.4
Lalb_Chr13g0295421 Lupinus albus HOM05D000336 ORTHO05D000593 7.9e-09 65.5 122 34.4
Aqoxy4G00167 Aquilegia oxysepala HOM05D000336 ORTHO05D000593 1.0e-08 65.1 146 32.9
MSTRG.16194 Avicennia marina HOM05D000336 ORTHO05D000593 1.3e-08 64.7 183 29.0
CDE01G0315 Ceratophyllum demersum HOM05D000336 ORTHO05D000593 1.3e-08 64.7 111 34.2
Haze_03479 Corylus avellana HOM05D000336 ORTHO05D000593 2.3e-08 63.9 168 32.1
Psat2g118200 Pisum sativum HOM05D008911 ORTHO05D010818 2.3e-08 63.9 163 33.1
Thhalv10000859m.g Eutrema salsugineum HOM05D000336 ORTHO05D000593 3.0e-08 63.5 135 34.8
TWI09G0926 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 3.0e-08 63.5 117 35.0
arahy.Tifrunner.gnm1.ann1.PF0H12 Arachis hypogaea HOM05D021848 ORTHO05D018477 3.9e-08 63.2 176 30.1
Cpa.g.sc17.161 Carica papaya HOM05D000336 ORTHO05D000593 3.9e-08 63.2 115 36.5
MBI05_g12582_MAGBIO Magnolia biondii HOM05D000336 ORTHO05D000593 3.9e-08 63.2 116 34.5
Medtr3g028570 Medicago truncatula HOM05D021848 ORTHO05D018477 3.9e-08 63.2 146 30.1
Cfa010551 Carpinus fangiana HOM05D000336 ORTHO05D000593 6.7e-08 62.4 168 31.5
CSS0025389 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 1.1e-07 61.6 170 30.6
CSS0029179 Camellia sinensis var. sinensis HOM05D000336 ORTHO05D002301 1.1e-07 61.6 170 30.6
Lalb_Chr18g0055071 Lupinus albus HOM05D000336 ORTHO05D000593 1.1e-07 61.6 123 32.5
Hma1.2p1_0012F.1_g007690 Hydrangea macrophylla HOM05D000336 ORTHO05D000593 1.9e-07 60.8 166 29.5
Lalb_Chr20g0117661 Lupinus albus HOM05D000336 ORTHO05D000593 2.5e-07 60.5 123 31.7
TAR629G3391 Trochodendron aralioides HOM05D000336 ORTHO05D000593 2.5e-07 60.5 128 29.7
EL10Ac8g19814 Beta vulgaris HOM05D000336 ORTHO05D000593 3.3e-07 60.1 124 32.3
Sabra11G0064100 Salix brachista HOM05D000336 ORTHO05D000593 3.3e-07 60.1 164 31.7
VMungo0540G0396 Vigna mungo HOM05D000336 ORTHO05D000593 5.6e-07 59.3 148 31.8
Oeu039583.1 Olea europaea HOM05D000336 ORTHO05D000593 7.4e-07 58.9 134 31.3
CiPaw.09G131900 Carya illinoinensis HOM05D000336 ORTHO05D000593 9.6e-07 58.5 178 27.0
Sed0008814 Sechium edule HOM05D000336 ORTHO05D000593 9.6e-07 58.5 146 29.5
Glyma.19G084600 Glycine max HOM05D000336 ORTHO05D002301 1.3e-06 58.2 107 32.7
MD05G1292900 Malus domestica HOM05D000336 ORTHO05D000593 1.3e-06 58.2 116 31.9
MD10G1268800 Malus domestica HOM05D000336 ORTHO05D000593 1.3e-06 58.2 116 31.0
Phvul.006G168500 Phaseolus vulgaris HOM05D000336 ORTHO05D000593 1.3e-06 58.2 169 30.8
unitig_62.g23365 Utricularia gibba HOM05D000336 ORTHO05D002301 1.6e-06 57.8 116 34.5
Rhsim02G0151700 Rhododendron simsii HOM05D000336 ORTHO05D000593 2.1e-06 57.4 179 28.5
Cc09_g09970 Coffea canephora HOM05D000336 ORTHO05D000593 2.8e-06 57.0 168 28.0
Ca_00499_v3 Cicer arietinum L. HOM05D000336 ORTHO05D000593 3.7e-06 56.6 175 27.4
SGA_v2.0_scaffold130G34319 Striga asiatica HOM05D000336 ORTHO05D000593 3.7e-06 56.6 103 31.1
THA.LOC104827741 Tarenaya hassleriana HOM05D000336 ORTHO05D000593 3.7e-06 56.6 112 29.5
TWI38G1780 Tripterygium wilfordii HOM05D000336 ORTHO05D000593 6.2e-06 55.8 124 32.3
Peaxi162Scf00027g00057 Petunia axillaris HOM05D000336 ORTHO05D000593 8.1e-06 55.5 104 32.7


User provided reference genes

Program Settings