Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 5.2e-298 1026.9 511 100.0
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 3.2e-263 911.4 511 88.1
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 2.4e-250 868.6 511 85.3
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 6.8e-250 867.1 511 83.8
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.7e-246 855.1 510 84.1
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.1e-244 849.7 511 84.0
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.1e-244 849.7 510 82.7
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 1.8e-242 842.4 511 82.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 4.4e-241 837.8 512 81.6
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.8e-241 837.4 512 81.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 2.9e-240 835.1 511 82.4
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 4.2e-239 831.2 512 80.7
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 2.1e-238 828.9 511 81.6
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 8.1e-235 817.0 512 80.1
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 3.9e-213 745.0 434 84.6
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 9.0e-210 733.8 506 70.4
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 1.2e-206 723.4 510 69.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 6.7e-205 717.6 510 70.2
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.0e-204 716.1 510 69.8
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 3.3e-204 715.3 509 69.0
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 7.4e-204 714.1 498 70.3
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.3e-203 713.4 510 69.8
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 4.1e-202 708.4 510 69.6
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 4.1e-202 708.4 518 69.1
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 3.4e-201 705.3 513 67.3
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 2.2e-200 702.6 512 67.4
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 2.9e-200 702.2 510 67.6
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.6e-198 696.4 510 67.8
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 2.7e-198 695.7 511 66.5
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 1.4e-197 693.3 509 66.4
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 8.8e-197 690.6 510 67.5
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 2.6e-196 689.1 512 67.4
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 4.4e-196 688.3 512 67.6
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-195 686.8 514 67.9
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.8e-195 685.6 510 66.9
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.8e-195 685.6 510 65.9
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 3.7e-195 685.3 511 67.1
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.4e-194 682.6 510 67.3
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.4e-194 682.6 510 67.3
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 3.5e-193 678.7 511 66.7
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 5.9e-193 677.9 533 64.2
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 3.8e-192 675.2 510 65.1
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 3.8e-192 675.2 510 65.1
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 3.6e-190 668.7 504 65.5
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.0e-189 667.2 510 65.3
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.8e-189 666.4 510 65.3
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 2.3e-189 666.0 510 65.3
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 5.2e-189 664.8 517 64.6
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 6.7e-189 664.5 509 65.2
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 9.7e-188 660.6 510 64.7
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 1.7e-187 659.8 511 64.6
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 3.7e-187 658.7 596 57.9
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 4.8e-187 658.3 506 63.6
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 8.2e-187 657.5 525 62.7
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 7.0e-186 654.4 510 65.3
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 9.1e-186 654.1 510 64.5
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 7.7e-185 651.0 512 63.7
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 2.2e-184 649.4 504 65.1
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 1.5e-183 646.7 513 63.4
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 9.4e-183 644.0 524 63.2
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.2e-182 643.7 506 64.0
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 1.6e-182 643.3 513 63.0
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 2.1e-182 642.9 510 63.3
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 2.1e-182 642.9 513 63.7
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 3.6e-182 642.1 514 64.0
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 3.0e-181 639.0 572 58.0
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 4.0e-181 638.6 473 65.3
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 6.8e-181 637.9 511 63.2
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 6.8e-181 637.9 513 63.9
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 8.8e-181 637.5 511 63.2
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 1.5e-180 636.7 511 63.8
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 2.6e-180 636.0 505 64.2
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 9.8e-180 634.0 510 62.7
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 1.3e-179 633.6 460 68.5
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 3.7e-179 632.1 511 63.4
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 3.7e-179 632.1 511 62.8
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 8.3e-179 630.9 458 67.9
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 8.3e-179 630.9 505 62.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 1.8e-178 629.8 510 62.5
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 4.1e-178 628.6 510 62.5
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 1.7e-176 623.2 511 62.2
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 2.2e-176 622.9 507 60.9
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 2.9e-176 622.5 502 63.1
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 3.8e-176 622.1 507 61.3
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 8.5e-176 620.9 513 62.8
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 4.2e-175 618.6 515 61.6
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 5.5e-175 618.2 510 61.4
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 9.5e-175 617.5 510 61.2
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 8.0e-174 614.4 510 61.4
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 6.8e-173 611.3 545 56.7
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 1.7e-171 606.7 483 62.1
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 2.8e-171 605.9 436 67.7
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 6.3e-171 604.7 510 60.4
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 5.4e-170 601.7 458 65.1
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 2.0e-169 599.7 433 67.4
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.0e-168 597.4 544 57.5
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.0e-164 583.2 457 62.6
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 7.5e-164 581.3 460 64.1
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.2e-161 573.9 503 57.3
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.6e-160 567.8 415 68.4
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 2.5e-159 566.2 517 57.1
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 1.2e-158 563.9 490 58.6
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.7e-153 546.2 355 73.8
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.6e-150 537.0 371 73.0
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 2.8e-150 536.2 456 59.4
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 5.8e-148 528.5 485 55.5
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 5.6e-143 511.9 368 67.7
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 2.6e-140 503.1 379 64.6
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 4.4e-140 502.3 412 61.2
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 2.1e-137 493.4 501 52.7
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 3.4e-132 476.1 447 57.0
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 3.0e-128 463.0 384 60.2
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 2.4e-117 426.8 499 45.1
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.6e-113 414.1 470 47.4
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-107 394.4 388 54.4
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 1.1e-106 391.3 439 47.4
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.1e-105 387.1 497 45.1
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 8.7e-104 381.7 278 67.6
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 2.1e-97 360.5 321 58.9
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 1.1e-79 301.6 454 39.0
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 6.3e-78 295.8 456 41.7
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 1.5e-71 274.6 459 37.7
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 4.5e-68 263.1 470 37.4
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 1.2e-60 238.4 243 54.3
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 5.2e-56 223.0 375 36.0
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 1.2e-55 221.9 157 70.7
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.5e-55 221.5 477 33.1
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 7.0e-53 212.6 216 52.3
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 9.2e-37 159.1 210 41.0
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 2.1e-36 157.9 248 38.7
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 2.1e-36 157.9 100 75.0
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 1.1e-34 152.1 92 78.3
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 2.2e-30 137.9 158 51.3
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 7.3e-26 122.9 345 27.0
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 8.1e-25 119.4 110 57.3
Medtr7g051967 Medicago truncatula HOM05D005505 ORTHO05D036509 1.1e-18 99.0 76 67.1
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 3.2e-13 80.9 58 67.2
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.7e-11 75.1 49 75.5
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 2.5e-10 71.2 66 60.6
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 3.3e-10 70.9 44 70.5
Lj3g0012363 Lotus japonicus HOM05D053840 ORTHO05D036509 1.8e-08 65.1 41 73.2
Lj6g0008505 Lotus japonicus HOM05D053840 ORTHO05D036509 4.0e-08 63.9 37 78.4
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 9.0e-08 62.8 463 22.2
Thecc.08G188900 Theobroma cacao HOM05D000686 ORTHO05D000512 5.8e-07 60.1 445 22.5


User provided reference genes

Program Settings