Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 2.9e-79 298.5 155 100.0
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 9.9e-43 177.2 150 69.3
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 1.3e-39 166.8 151 67.5
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 4.3e-38 161.8 152 67.8
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 1.4e-36 156.8 147 62.6
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 6.9e-36 154.5 148 62.8
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 1.5e-35 153.3 147 61.2
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 2.1e-32 142.9 160 59.4
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 2.3e-31 139.4 147 59.2
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 5.8e-27 124.8 140 54.3
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 1.6e-24 116.7 152 48.0
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 1.9e-22 109.8 122 55.7
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 2.5e-22 109.4 122 54.9
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 5.7e-22 108.2 122 54.9
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 1.3e-21 107.1 104 60.6
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 3.7e-21 105.5 140 44.3
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 6.2e-21 104.8 131 47.3
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 1.8e-20 103.2 105 57.1
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 9.0e-20 100.9 101 58.4
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 9.0e-20 100.9 143 46.9
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 1.5e-19 100.1 99 57.6
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 2.0e-19 99.8 147 44.2
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 2.6e-19 99.4 98 57.1
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 4.5e-19 98.6 146 44.5
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 1.0e-18 97.4 160 45.0
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 1.3e-18 97.1 128 49.2
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 1.7e-18 96.7 108 55.6
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 2.2e-18 96.3 100 54.0
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 2.9e-18 95.9 100 54.0
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 2.9e-18 95.9 122 47.5
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 2.9e-18 95.9 112 51.8
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 3.8e-18 95.5 97 53.6
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 3.8e-18 95.5 99 54.5
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 1.9e-17 93.2 100 51.0
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 1.9e-17 93.2 116 49.1
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 3.2e-17 92.4 124 51.6
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 3.2e-17 92.4 98 55.1
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 5.5e-17 91.7 106 51.9
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 5.5e-17 91.7 110 52.7
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 7.1e-17 91.3 115 52.2
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 9.3e-17 90.9 124 48.4
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 3.5e-16 89.0 113 48.7
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.0e-15 87.4 103 48.5
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 1.3e-15 87.0 100 52.0
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.3e-15 87.0 103 48.5
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 1.3e-15 87.0 134 43.3
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 2.3e-15 86.3 98 48.0
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 3.9e-15 85.5 103 47.6
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 3.9e-15 85.5 103 47.6
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 5.1e-15 85.1 141 40.4
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 9.7e-14 80.9 142 38.7
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 1.3e-13 80.5 122 41.8
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 1.6e-13 80.1 102 48.0
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 4.8e-13 78.6 100 47.0
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 8.2e-13 77.8 111 45.0
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 8.2e-13 77.8 111 45.0
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 1.1e-12 77.4 112 44.6
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 1.4e-12 77.0 95 49.5
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 3.1e-12 75.9 99 49.5
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 5.3e-12 75.1 104 45.2
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 6.9e-12 74.7 132 37.9
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 9.0e-12 74.3 97 48.5
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 9.0e-12 74.3 123 39.8
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 9.0e-12 74.3 123 39.8
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 1.5e-11 73.6 100 49.0
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 2.6e-11 72.8 102 46.1
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 2.6e-11 72.8 95 47.4
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 4.5e-11 72.0 136 38.2
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 7.7e-11 71.2 104 42.3
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 7.7e-11 71.2 97 42.3
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 1.4e-09 67.0 106 39.6
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 1.9e-09 66.6 88 40.9
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 4.2e-09 65.5 97 42.3
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 1.2e-08 63.9 113 38.9
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 1.6e-08 63.5 93 41.9
Duzib170G0703 Durio zibethinus HOM05D007890 ORTHO05D009945 3.6e-08 62.4 71 54.9
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 6.1e-08 61.6 110 40.9
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 1.0e-07 60.8 177 33.3
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 1.0e-07 60.8 98 38.8
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 1.4e-07 60.5 106 41.5
PGR102G2636 Punica granatum HOM05D007890 ORTHO05D009945 3.0e-07 59.3 117 38.5
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 1.5e-06 57.0 118 35.6
Nitab4.5_0001587g0050 Nicotiana tabacum HOM05D007890 ORTHO05D009945 9.7e-06 54.3 59 45.8


User provided reference genes

Program Settings