Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 4.5e-129 464.5 226 100.0
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.0e-120 436.8 226 96.9
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 5.2e-117 424.5 226 92.0
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.1e-114 416.8 226 90.3
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 3.5e-105 385.2 228 85.5
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 8.6e-104 380.6 226 82.3
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 4.7e-102 374.8 228 82.5
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 3.4e-100 368.6 228 82.0
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.9e-99 365.5 228 81.1
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 6.6e-96 354.4 219 79.0
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.3e-91 340.1 234 73.5
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 8.3e-91 337.4 233 73.4
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 8.3e-91 337.4 233 71.2
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 1.1e-90 337.0 232 72.8
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.4e-90 335.9 235 71.5
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 5.4e-90 334.7 229 74.2
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.1e-89 332.8 233 73.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.7e-89 332.4 230 73.0
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 7.8e-89 330.9 233 71.2
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 3.0e-88 328.9 232 70.7
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.1e-87 327.0 233 71.7
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 4.3e-87 325.1 233 70.4
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 9.6e-87 323.9 228 71.5
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 3.6e-86 322.0 229 70.3
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 3.6e-86 322.0 228 71.9
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.7e-86 321.6 234 67.5
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.7e-86 321.6 234 67.9
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 4.7e-86 321.6 234 67.9
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 4.7e-86 321.6 234 72.2
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 4.7e-86 321.6 230 70.9
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.2e-86 321.2 228 71.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 6.2e-86 321.2 233 69.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 8.1e-86 320.9 227 71.4
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.4e-85 320.1 233 70.4
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.8e-85 319.7 228 71.5
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.8e-85 319.7 228 71.5
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 3.1e-85 318.9 233 70.8
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 4.0e-85 318.5 228 71.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.8e-85 317.8 228 71.1
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 2.6e-84 315.8 231 69.7
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 4.9e-83 311.6 234 69.2
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 6.4e-83 311.2 236 69.1
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.2e-82 308.9 233 67.8
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 5.4e-82 308.1 235 66.8
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 7.1e-82 307.8 233 69.1
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 9.3e-82 307.4 227 67.4
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 2.7e-81 305.8 233 68.7
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 6.0e-81 304.7 227 67.8
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 6.0e-81 304.7 228 70.2
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 1.3e-80 303.5 240 65.4
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 5.1e-80 301.6 234 67.5
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.5e-79 300.1 228 65.8
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.6e-79 298.1 228 66.7
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 9.6e-79 297.4 226 66.4
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 3.6e-78 295.4 228 65.4
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.4e-77 293.5 233 64.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.4e-77 292.7 224 67.0
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 3.4e-76 288.9 227 70.0
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 3.4e-76 288.9 227 70.0
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 2.2e-75 286.2 227 63.0
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.9e-75 285.8 233 64.8
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.8e-75 285.4 233 64.8
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.9e-74 283.1 228 63.2
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.4e-74 281.6 229 66.8
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 7.1e-74 281.2 229 64.2
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 9.3e-74 280.8 229 65.5
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-73 280.4 233 63.9
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.2e-73 280.4 241 61.8
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.5e-73 278.9 239 61.1
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.5e-73 278.9 227 63.0
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 4.6e-73 278.5 226 65.5
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 7.9e-73 277.7 226 62.8
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.3e-72 276.2 231 62.8
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.9e-72 275.4 228 62.3
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 3.9e-72 275.4 232 63.4
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 5.6e-71 271.6 233 63.5
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.1e-70 269.6 231 60.2
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 2.1e-70 269.6 224 62.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 2.8e-70 269.2 231 62.3
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 3.6e-70 268.9 226 60.2
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 3.6e-70 268.9 234 60.3
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 4.8e-70 268.5 226 62.4
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 8.1e-70 267.7 235 61.3
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.4e-69 266.9 226 61.1
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.8e-69 266.5 221 60.6
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.8e-69 266.5 228 59.6
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 4.0e-69 265.4 236 60.2
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.5e-68 263.5 221 61.1
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 2.6e-68 262.7 230 61.3
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.8e-68 261.5 221 60.6
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 5.8e-68 261.5 226 59.7
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 7.6e-68 261.2 231 60.6
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 7.6e-68 261.2 168 75.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 1.7e-67 260.0 223 61.0
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.4e-67 258.1 231 59.7
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.4e-66 256.9 224 60.3
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.9e-66 256.5 224 60.3
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 3.2e-66 255.8 228 56.1
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.2e-66 255.8 234 60.3
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 7.1e-66 254.6 230 58.3
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-65 253.8 229 56.3
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.2e-65 253.8 229 55.9
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.2e-65 253.8 229 56.3
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 4.6e-65 251.9 223 58.3
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 4.6e-65 251.9 227 59.9
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 7.9e-65 251.1 224 57.6
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-64 250.4 226 58.4
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 2.3e-64 249.6 228 58.8
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.3e-64 249.6 223 56.1
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.1e-64 248.4 221 59.7
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 6.7e-64 248.1 222 57.2
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 6.7e-64 248.1 250 54.0
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.5e-63 246.9 228 58.3
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.5e-63 246.9 230 60.0
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 1.5e-63 246.9 225 56.9
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.5e-63 246.1 234 57.7
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 7.4e-63 244.6 222 58.1
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 9.6e-63 244.2 243 52.7
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.1e-62 243.0 143 77.6
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.8e-62 241.9 237 55.7
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 6.2e-62 241.5 188 65.4
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 8.1e-62 241.1 235 53.6
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.1e-61 240.7 260 53.1
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.0e-61 238.8 228 61.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 9.0e-61 237.7 228 57.5
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 1.5e-60 236.9 218 56.9
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 5.8e-60 235.0 205 58.5
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.0e-59 234.2 248 52.4
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 1.0e-59 234.2 237 53.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.7e-59 233.4 216 55.1
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 1.7e-59 233.4 226 55.3
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 3.8e-59 232.3 150 72.7
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.5e-59 231.5 229 55.9
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.7e-57 226.1 226 55.3
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 6.0e-57 224.9 231 52.4
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.0e-57 224.9 196 60.7
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.8e-56 223.4 228 58.8
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 9.6e-55 217.6 141 70.2
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.7e-54 215.7 225 48.4
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 8.2e-54 214.5 225 47.6
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-53 214.2 219 53.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.8e-53 213.4 139 70.5
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.4e-53 213.0 195 54.4
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 9.0e-53 211.1 201 51.7
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 9.0e-53 211.1 201 51.7
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.6e-52 209.5 244 49.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 5.8e-52 208.4 231 46.8
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 1.7e-51 206.8 210 52.4
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 2.9e-51 206.1 225 45.3
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.9e-51 206.1 221 50.7
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.0e-51 205.3 225 45.3
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.1e-50 204.1 147 63.9
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 7.2e-50 201.4 225 46.2
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.2e-49 200.7 227 44.9
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.6e-49 200.3 241 48.5
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 4.6e-49 198.7 226 47.3
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 5.1e-48 195.3 131 64.1
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 6.7e-48 194.9 234 48.7
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.8e-46 189.5 277 44.4
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 3.1e-45 186.0 229 46.3
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.5e-44 182.2 232 46.6
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.9e-43 179.5 167 53.3
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 6.5e-43 178.3 164 57.3
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.4e-42 177.2 122 67.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.6e-41 173.7 135 63.0
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 4.6e-41 172.2 180 50.6
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.9e-40 169.1 132 60.6
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-38 164.1 220 48.6
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.4e-37 159.8 129 56.6
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 5.3e-37 158.7 106 66.0
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 4.5e-36 155.6 234 45.7
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 4.5e-36 155.6 234 45.7
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.0e-35 152.1 82 86.6
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 2.7e-33 146.4 230 43.5
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.3e-32 143.3 88 77.3
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.2e-24 115.5 115 55.7
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.2e-22 110.2 63 77.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 4.2e-18 95.9 54 75.9
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 8.0e-17 91.7 52 78.8
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 1.5e-07 60.8 137 38.0


User provided reference genes

Program Settings