Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G332600 Glycine max HOM05D004577 ORTHO05D005062 4.0e-71 271.6 160 100.0
Glyma.18G074400 Glycine max HOM05D004577 ORTHO05D005062 1.1e-63 246.9 160 93.8
Phvul.006G059254 Phaseolus vulgaris HOM05D004577 ORTHO05D005062 1.5e-57 226.5 160 86.9
VMungo0540G1151 Vigna mungo HOM05D004577 ORTHO05D005062 1.5e-54 216.5 160 84.4
Lj6g0018119 Lotus japonicus HOM05D004577 ORTHO05D005062 1.5e-46 189.9 161 77.0
Lalb_Chr16g0391221 Lupinus albus HOM05D004577 ORTHO05D005062 2.6e-46 189.1 162 75.9
Medtr3g461020 Medicago truncatula HOM05D004577 ORTHO05D005062 3.4e-46 188.7 163 77.9
Psat5g166440 Pisum sativum HOM05D004577 ORTHO05D005062 1.3e-45 186.8 159 78.6
arahy.Tifrunner.gnm1.ann1.DGYJ7N Arachis hypogaea HOM05D004577 ORTHO05D005062 2.7e-43 179.1 165 73.9
arahy.Tifrunner.gnm1.ann1.JWFX0I Arachis hypogaea HOM05D004577 ORTHO05D005062 4.6e-43 178.3 165 73.9
TPR.G17935 Trifolium pratense HOM05D004577 ORTHO05D005062 1.3e-42 176.8 162 68.5
Ca_12454_v3 Cicer arietinum L. HOM05D004577 ORTHO05D005062 4.4e-38 161.8 146 75.3
QL08p002692 Quercus lobata HOM05D004577 ORTHO05D005062 1.7e-29 133.3 100 85.0
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 3.8e-29 132.1 118 78.0
RcHm_v2.0_Chr5g0075591 Rosa chinensis HOM05D004577 ORTHO05D005062 4.9e-29 131.7 173 53.2
CiPaw.11G206900 Carya illinoinensis HOM05D004577 ORTHO05D005062 8.4e-29 131.0 107 81.3
Cfa021890 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.1e-28 130.6 118 75.4
ClCG10G004020 Citrullus lanatus HOM05D004577 ORTHO05D005062 1.1e-28 130.6 175 56.6
MELO3C014068.2 Cucumis melo HOM05D004577 ORTHO05D005062 1.1e-28 130.6 175 57.1
MD03G1035300 Malus domestica HOM05D004577 ORTHO05D005062 1.1e-28 130.6 118 66.9
MD11G1037000 Malus domestica HOM05D004577 ORTHO05D005062 1.1e-28 130.6 170 53.5
FAN21G3744 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.4e-28 130.2 169 54.4
FAN25G2651 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.4e-28 130.2 169 54.4
FAN16G3679 Fragaria x ananassa HOM05D004577 ORTHO05D005062 1.9e-28 129.8 169 54.4
CiPaw.12G140600 Carya illinoinensis HOM05D004577 ORTHO05D005062 7.1e-28 127.9 101 83.2
Dinv40884 Davidia involucrata HOM05D002691 ORTHO05D003304 7.1e-28 127.9 167 62.3
CsaV3_3G003860 Cucumis sativus L. HOM05D004577 ORTHO05D005062 1.6e-27 126.7 173 55.5
Sed0027009 Sechium edule HOM05D004577 ORTHO05D005062 1.6e-27 126.7 168 59.5
FvH4_3g42270 Fragaria vesca HOM05D004577 ORTHO05D005062 4.6e-27 125.2 169 53.8
ClCG10G003880 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.7e-26 120.9 119 72.3
ClCG10G004040 Citrullus lanatus HOM05D004577 ORTHO05D005062 8.7e-26 120.9 119 72.3
Sc22g0002120 Simmondsia chinensis HOM05D004577 ORTHO05D005062 1.5e-25 120.2 163 57.1
Prupe.6G028300 Prunus persica HOM05D004577 ORTHO05D005062 1.9e-25 119.8 170 50.6
FAN11G1489 Fragaria x ananassa HOM05D004577 ORTHO05D005062 2.5e-25 119.4 168 51.2
Nn1g08321 Nelumbo nucifera HOM05D004577 ORTHO05D005062 2.5e-25 119.4 116 71.6
CSS0013049 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 4.3e-25 118.6 138 67.4
PGR004G1013 Punica granatum HOM05D004577 ORTHO05D005062 1.3e-24 117.1 177 54.8
TAR629G1725 Trochodendron aralioides HOM05D004577 ORTHO05D005062 2.1e-24 116.3 130 67.7
unitig_578.g16418 Utricularia gibba HOM05D004577 ORTHO05D005062 2.1e-24 116.3 159 59.1
MBI15_g38535_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 2.8e-24 115.9 167 57.5
Migut.M01633 Erythranthe guttata HOM05D004577 ORTHO05D005062 3.7e-24 115.5 123 69.9
TAR627G0729 Trochodendron aralioides HOM05D004577 ORTHO05D005062 8.1e-24 114.4 106 76.4
unitig_8.g4693 Utricularia gibba HOM05D002703 ORTHO05D002921 1.1e-23 114.0 149 59.1
Eucgr.K00372 Eucalyptus grandis HOM05D004577 ORTHO05D005062 1.8e-23 113.2 114 71.9
MSTRG.13031 Avicennia marina HOM05D004577 ORTHO05D005062 2.4e-23 112.8 141 61.7
CSS0030856 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.3e-23 111.7 136 64.7
CSS0048553 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 5.3e-23 111.7 134 65.7
CANSAT11G1943 Cannabis sativa HOM05D004577 ORTHO05D005062 5.3e-23 111.7 167 54.5
Duzib213G0774 Durio zibethinus HOM05D004577 ORTHO05D005062 1.2e-22 110.5 163 52.8
Lsat_1_v5_gn_9_89100 Lactuca sativa HOM05D004577 ORTHO05D005062 1.2e-22 110.5 117 73.5
MSTRG.14503 Avicennia marina HOM05D004577 ORTHO05D005062 1.5e-22 110.2 99 77.8
EL10Ac7g17857 Beta vulgaris HOM05D004577 ORTHO05D005062 3.4e-22 109.0 100 78.0
Peaxi162Scf00359g00123 Petunia axillaris HOM05D004577 ORTHO05D005062 5.8e-22 108.2 100 81.0
Sopen08g002020 Solanum pennellii HOM05D004577 ORTHO05D005062 5.8e-22 108.2 161 54.0
HanXRQChr03g0080381 Helianthus annuus HOM05D004577 ORTHO05D005062 7.6e-22 107.8 98 81.6
Migut.H01738 Erythranthe guttata HOM05D004577 ORTHO05D005062 1.3e-21 107.1 168 57.7
PSO541G2111 Papaver somniferum HOM05D004577 ORTHO05D005062 2.2e-21 106.3 97 80.4
PSO675G7851 Papaver somniferum HOM05D004577 ORTHO05D005062 2.2e-21 106.3 97 80.4
PGSC0003DMG400014846 Solanum tuberosum HOM05D004577 ORTHO05D005062 2.2e-21 106.3 161 57.1
EL10Ac2g03806 Beta vulgaris HOM05D004577 ORTHO05D005062 2.9e-21 105.9 96 79.2
CSS0050514 Camellia sinensis var. sinensis HOM05D004577 ORTHO05D005062 2.9e-21 105.9 133 64.7
Oeu021394.1 Olea europaea HOM05D004577 ORTHO05D005062 2.9e-21 105.9 107 71.0
HanXRQChr13g0408461 Helianthus annuus HOM05D004577 ORTHO05D005062 3.8e-21 105.5 129 67.4
CDE01G0461 Ceratophyllum demersum HOM05D004577 ORTHO05D005062 4.9e-21 105.1 130 63.8
Solyc04g051850.3 Solanum lycopersicum HOM05D004577 ORTHO05D005062 4.9e-21 105.1 100 79.0
PGSC0003DMG400016552 Solanum tuberosum HOM05D004577 ORTHO05D005062 4.9e-21 105.1 100 79.0
Gohir.D09G118900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 8.4e-21 104.4 164 52.4
Cc10_g02580 Coffea canephora HOM05D004577 ORTHO05D005062 1.1e-20 104.0 103 75.7
ECA240G1529 Erigeron canadensis HOM05D000491 ORTHO05D000359 1.1e-20 104.0 117 67.5
Solyc08g006050.2 Solanum lycopersicum HOM05D004577 ORTHO05D005062 1.1e-20 104.0 161 55.9
Sopen04g023180 Solanum pennellii HOM05D004577 ORTHO05D005062 1.1e-20 104.0 99 78.8
CDE02G2114 Ceratophyllum demersum HOM05D000091 ORTHO05D002116 1.9e-20 103.2 106 69.8
DCAR_015198 Daucus carota HOM05D004577 ORTHO05D005062 2.5e-20 102.8 159 55.3
Thecc.07G153300 Theobroma cacao HOM05D004577 ORTHO05D005062 3.2e-20 102.4 104 70.2
Potri.011G163900 Populus trichocarpa HOM05D004577 ORTHO05D005062 1.2e-19 100.5 166 52.4
SalBow1G5164 Salvia bowleyana HOM05D004577 ORTHO05D005062 1.2e-19 100.5 148 57.4
THA.LOC104826365 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.2e-19 100.5 113 66.4
DCAR_019165 Daucus carota HOM05D004577 ORTHO05D005062 1.6e-19 100.1 112 69.6
MBI07_g28243_MAGBIO Magnolia biondii HOM05D004577 ORTHO05D005062 1.6e-19 100.1 100 61.0
Gohir.A01G038700 Gossypium hirsutum HOM05D004577 ORTHO05D005062 4.6e-19 98.6 168 50.0
Nitab4.5_0000904g0010 Nicotiana tabacum HOM05D004577 ORTHO05D005062 6.0e-19 98.2 162 54.3
HPP92_020499 Vanilla planifolia HOM05D004577 ORTHO05D005062 1.0e-18 97.4 116 68.1
Manes.01G021500 Manihot esculenta HOM05D004577 ORTHO05D005062 1.3e-18 97.1 176 50.0
Carub.0001s4488 Capsella rubella HOM05D004577 ORTHO05D005062 1.8e-18 96.7 163 54.0
Nitab4.5_0005865g0040 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.0e-18 95.9 100 75.0
AT1G56200 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 3.9e-18 95.5 122 63.1
TWI38G1007 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.9e-18 95.5 174 47.1
AL1G64510 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 6.7e-18 94.7 104 69.2
Thhalv10011850m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 8.7e-18 94.4 104 71.2
Ciclev10009709m.g Citrus clementina HOM05D004577 ORTHO05D005062 1.5e-17 93.6 111 62.2
Aqoxy5G01161 Aquilegia oxysepala HOM05D004577 ORTHO05D005062 2.5e-17 92.8 118 64.4
Manes.05G118000 Manihot esculenta HOM05D004577 ORTHO05D005062 3.3e-17 92.4 170 51.2
CARHR045970 Cardamine hirsuta HOM05D004577 ORTHO05D005062 4.3e-17 92.0 106 68.9
SGA_v2.0_scaffold8G04425 Striga asiatica HOM05D004577 ORTHO05D005062 5.6e-17 91.7 166 51.8
C04p16620 Brassica napus HOM05D004577 ORTHO05D005062 9.6e-17 90.9 119 64.7
Sp1g41840 Schrenkiella parvula HOM05D004577 ORTHO05D005062 2.1e-16 89.7 105 68.6
BolC4t23212H Brassica oleracea HOM05D004577 ORTHO05D005062 2.8e-16 89.4 111 65.8
Hma1.2p1_0193F.1_g083910 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 2.8e-16 89.4 86 75.6
Eucgr.E00269 Eucalyptus grandis HOM05D004577 ORTHO05D005062 3.7e-16 89.0 177 42.9
TWI39G1131 Tripterygium wilfordii HOM05D004577 ORTHO05D005062 3.7e-16 89.0 175 45.1
A05p12690 Brassica napus HOM05D004577 ORTHO05D005062 4.8e-16 88.6 106 67.9
Duzib187G1448 Durio zibethinus HOM05D004577 ORTHO05D005062 4.8e-16 88.6 111 59.5
QL08p055193 Quercus lobata HOM05D004577 ORTHO05D005062 4.8e-16 88.6 172 45.9
ATR0681G062 Amborella trichopoda HOM05D004577 ORTHO05D005062 8.2e-16 87.8 96 69.8
BraA05t20207Z Brassica rapa HOM05D004577 ORTHO05D005062 8.2e-16 87.8 106 67.9
BcaB02g10507 Brassica carinata HOM05D004577 ORTHO05D005062 1.4e-15 87.0 100 70.0
Hma1.2p1_3473F.1_g336250 Hydrangea macrophylla HOM05D004577 ORTHO05D005062 5.3e-15 85.1 86 67.4
GSVIVG01014742001 Vitis vinifera HOM05D004577 ORTHO05D005062 5.3e-15 85.1 54 77.8
A07p09910 Brassica napus HOM05D004577 ORTHO05D005062 3.4e-14 82.4 151 45.7
Carub.0001s2869 Capsella rubella HOM05D004577 ORTHO05D005062 3.4e-14 82.4 123 57.7
Nitab4.5_0000329g0070 Nicotiana tabacum HOM05D004577 ORTHO05D005062 5.8e-14 81.6 115 58.3
C07p15110 Brassica napus HOM05D004577 ORTHO05D005062 1.0e-13 80.9 84 67.9
BolC7t42015H Brassica oleracea HOM05D004577 ORTHO05D005062 1.0e-13 80.9 84 67.9
AL1G44500 Arabidopsis lyrata HOM05D004577 ORTHO05D005062 1.3e-13 80.5 84 75.0
BcaB03g13825 Brassica carinata HOM05D004577 ORTHO05D005062 1.3e-13 80.5 84 67.9
Cfa001670 Carpinus fangiana HOM05D004577 ORTHO05D005062 1.3e-13 80.5 100 64.0
CARHR029880 Cardamine hirsuta HOM05D004577 ORTHO05D005062 2.2e-13 79.7 155 46.5
BcaNung05263 Brassica carinata HOM05D004577 ORTHO05D005062 4.9e-13 78.6 98 57.1
Sp1g26310 Schrenkiella parvula HOM05D004577 ORTHO05D005062 4.9e-13 78.6 106 57.5
BcaC01g00196 Brassica carinata HOM05D004577 ORTHO05D005062 1.1e-12 77.4 121 50.4
THA.LOC104798603 Tarenaya hassleriana HOM05D004577 ORTHO05D005062 1.1e-12 77.4 87 71.3
Haze_16864 Corylus avellana HOM05D004577 ORTHO05D005062 1.9e-12 76.6 99 64.6
AT1G30475 Arabidopsis thaliana HOM05D004577 ORTHO05D005062 2.5e-12 76.3 84 72.6
A08p24420 Brassica napus HOM05D004577 ORTHO05D005062 2.5e-12 76.3 85 61.2
C03p76790 Brassica napus HOM05D004577 ORTHO05D005062 2.5e-12 76.3 118 48.3
BraA08t34397Z Brassica rapa HOM05D004577 ORTHO05D005062 2.5e-12 76.3 85 61.2
Thhalv10008915m.g Eutrema salsugineum HOM05D004577 ORTHO05D005062 3.2e-12 75.9 155 49.7
Nitab4.5_0006854g0030 Nicotiana tabacum HOM05D004577 ORTHO05D005062 3.2e-12 75.9 179 46.9
Gorai.002G035900 Gossypium raimondii HOM05D004577 ORTHO05D005062 5.5e-12 75.1 162 44.4
BolC3t19933H Brassica oleracea HOM05D004577 ORTHO05D005062 7.1e-12 74.7 121 47.9
HPP92_011618 Vanilla planifolia HOM05D004577 ORTHO05D005062 7.1e-12 74.7 112 56.2
BraA07t28780Z Brassica rapa HOM05D004577 ORTHO05D005062 9.3e-12 74.3 85 64.7
Gorai.N025400 Gossypium raimondii HOM05D004577 ORTHO05D005062 9.3e-12 74.3 74 71.6
unitig_0.g986 Utricularia gibba HOM05D004577 ORTHO05D005062 1.2e-11 73.9 88 70.5
Atru.chr1.1924 Acer truncatum HOM05D004577 ORTHO05D005062 2.1e-11 73.2 136 50.0
CiPaw.01G270900 Carya illinoinensis HOM05D004577 ORTHO05D005062 4.6e-11 72.0 120 51.7
Gorai.008G093100 Gossypium raimondii HOM05D004577 ORTHO05D005062 4.6e-11 72.0 68 72.1
Gorai.008G148200 Gossypium raimondii HOM05D004577 ORTHO05D005062 6.1e-11 71.6 72 68.1
Dinv26646 Davidia involucrata HOM05D004577 ORTHO05D005062 6.7e-10 68.2 90 60.0
Aa31LG10G50 Aethionema arabicum HOM05D004577 ORTHO05D005062 9.7e-09 64.3 68 67.6
Gohir.D08G183166 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.3e-08 63.9 68 64.7
Gorai.009G401800 Gossypium raimondii HOM05D004577 ORTHO05D005062 1.6e-08 63.5 68 58.8
Atru.chr2.3835 Acer truncatum HOM05D004577 ORTHO05D005062 2.2e-08 63.2 165 41.2
Gohir.A04G049900 Gossypium hirsutum HOM05D004577 ORTHO05D005062 1.4e-07 60.5 86 47.7
Lalb_Chr03g0040851 Lupinus albus HOM05D011393 ORTHO05D013493 1.8e-07 60.1 122 44.3
TPR.G2686 Trifolium pratense HOM05D011393 ORTHO05D013493 5.3e-07 58.5 83 55.4
arahy.Tifrunner.gnm1.ann1.8LZ2EL Arachis hypogaea HOM05D011393 ORTHO05D013493 3.4e-06 55.8 92 46.7
arahy.Tifrunner.gnm1.ann1.GG3KEQ Arachis hypogaea HOM05D011393 ORTHO05D013493 3.4e-06 55.8 92 46.7
Psat2g090480 Pisum sativum HOM05D011393 ORTHO05D013493 3.4e-06 55.8 48 62.5
Rhsim06G0184100 Rhododendron simsii HOM05D041616 ORTHO05D005062 7.7e-06 54.7 107 52.3
Mapoly0050s0087 Marchantia polymorpha HOM05D034204 ORTHO05D005062 1.0e-05 54.3 103 47.6


User provided reference genes

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