Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G332400 Glycine max HOM05D006736 ORTHO05D008459 6.3e-61 237.3 122 100.0
Glyma.18G074500 Glycine max HOM05D006736 ORTHO05D008459 3.0e-34 148.7 109 78.9
Phvul.006G059230 Phaseolus vulgaris HOM05D006736 ORTHO05D008459 5.8e-30 134.4 107 67.3
Medtr3g461010 Medicago truncatula HOM05D006736 ORTHO05D008459 1.6e-27 126.3 110 67.3
VMungo0540G0896 Vigna mungo HOM05D006736 ORTHO05D008459 1.1e-25 120.2 109 64.2
TPR.G17947 Trifolium pratense HOM05D006736 ORTHO05D008459 6.9e-23 110.9 127 53.5
Psat5g166560 Pisum sativum HOM05D006736 ORTHO05D008459 2.6e-22 109.0 130 52.3
Lalb_Chr15g0082301 Lupinus albus HOM05D006736 ORTHO05D008459 4.9e-21 104.8 125 52.8
Lalb_Chr20g0114121 Lupinus albus HOM05D006736 ORTHO05D008459 6.4e-21 104.4 120 55.0
Lj6g0005510 Lotus japonicus HOM05D006736 ORTHO05D008459 1.7e-18 96.3 102 55.9
Cfa021889 Carpinus fangiana HOM05D006736 ORTHO05D008459 4.3e-17 91.7 113 47.8
CiPaw.11G206800 Carya illinoinensis HOM05D006736 ORTHO05D008459 4.8e-16 88.2 110 50.9
QL08p003180 Quercus lobata HOM05D006736 ORTHO05D008459 1.8e-15 86.3 111 48.6
Eucgr.F02027 Eucalyptus grandis HOM05D006736 ORTHO05D008459 2.4e-15 85.9 107 47.7
Prupe.6G028200 Prunus persica HOM05D006736 ORTHO05D008459 1.2e-14 83.6 117 49.6
Thecc.07G008000 Theobroma cacao HOM05D006736 ORTHO05D008459 2.0e-14 82.8 112 50.0
GSVIVG01014741001 Vitis vinifera HOM05D006736 ORTHO05D008459 2.0e-14 82.8 110 48.2
ClCG10G003900 Citrullus lanatus HOM05D006736 ORTHO05D008459 9.9e-14 80.5 104 45.2
ClCG10G004060 Citrullus lanatus HOM05D006736 ORTHO05D008459 9.9e-14 80.5 104 45.2
Haze_09864 Corylus avellana HOM05D004577 ORTHO05D005062 2.2e-13 79.3 106 43.4
TAR624G0983 Trochodendron aralioides HOM05D006736 ORTHO05D008459 2.2e-13 79.3 96 51.0
MELO3C014070.2 Cucumis melo HOM05D006736 ORTHO05D008459 6.4e-13 77.8 109 42.2
Cpa.g.sc12.109 Carica papaya HOM05D006736 ORTHO05D008459 1.1e-12 77.0 114 43.9
Duzib268G0079 Durio zibethinus HOM05D006736 ORTHO05D008459 2.4e-12 75.9 110 48.2
Glyma.14G011700 Glycine max HOM05D006736 ORTHO05D008459 2.4e-12 75.9 113 43.4
CsaV3_7G023850 Cucumis sativus L. HOM05D006736 ORTHO05D008459 5.4e-12 74.7 84 51.2
TWI38G1827 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 5.4e-12 74.7 51 70.6
Sabra16G0244100 Salix brachista HOM05D006736 ORTHO05D008459 7.1e-12 74.3 85 50.6
LjContig00081g0022969 Lotus japonicus HOM05D006736 ORTHO05D008459 2.7e-11 72.4 106 42.5
MELO3C024968.2 Cucumis melo HOM05D006736 ORTHO05D008459 6.0e-11 71.2 75 54.7
Thhalv10015819m.g Eutrema salsugineum HOM05D006736 ORTHO05D008459 6.0e-11 71.2 108 47.2
FAN25G3397 Fragaria x ananassa HOM05D006736 ORTHO05D008459 6.0e-11 71.2 132 41.7
BcaC04g20175 Brassica carinata HOM05D006736 ORTHO05D008459 7.9e-11 70.9 122 42.6
C09p46970 Brassica napus HOM05D006736 ORTHO05D008459 7.9e-11 70.9 123 44.7
A10p13210 Brassica napus HOM05D006736 ORTHO05D008459 1.0e-10 70.5 52 71.2
BraA10t43419Z Brassica rapa HOM05D006736 ORTHO05D008459 1.0e-10 70.5 52 71.2
Potri.001G371400 Populus trichocarpa HOM05D006736 ORTHO05D008459 1.8e-10 69.7 101 43.6
Sp6g17830 Schrenkiella parvula HOM05D006736 ORTHO05D008459 1.8e-10 69.7 100 51.0
TWI39G1297 Tripterygium wilfordii HOM05D006736 ORTHO05D008459 1.8e-10 69.7 53 67.9
FAN16G2066 Fragaria x ananassa HOM05D002691 ORTHO05D003304 2.3e-10 69.3 127 39.4
CsaV3_3G003890 Cucumis sativus L. HOM05D006736 ORTHO05D008459 3.0e-10 68.9 104 42.3
FvH4_3g42280 Fragaria vesca HOM05D006736 ORTHO05D008459 3.0e-10 68.9 117 44.4
FAN11G0661 Fragaria x ananassa HOM05D006736 ORTHO05D008459 3.0e-10 68.9 117 44.4
Ah.06g181490 Amaranthus hybridus HOM05D006736 ORTHO05D008459 3.9e-10 68.6 69 58.0
BolC9t57545H Brassica oleracea HOM05D006736 ORTHO05D008459 5.1e-10 68.2 94 51.1
CARHR269350 Cardamine hirsuta HOM05D006736 ORTHO05D008459 5.1e-10 68.2 54 70.4
Duzib170G0862 Durio zibethinus HOM05D006736 ORTHO05D008459 5.1e-10 68.2 111 46.8
Gohir.D13G134200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 6.7e-10 67.8 100 48.0
Gorai.013G150500 Gossypium raimondii HOM05D006736 ORTHO05D008459 6.7e-10 67.8 100 48.0
Sc03g0011540 Simmondsia chinensis HOM05D006736 ORTHO05D008459 6.7e-10 67.8 47 70.2
BcaB08g35964 Brassica carinata HOM05D006736 ORTHO05D008459 8.7e-10 67.4 93 49.5
ClCG09G021530 Citrullus lanatus HOM05D006736 ORTHO05D008459 8.7e-10 67.4 81 46.9
Aqoxy4G01886 Aquilegia oxysepala HOM05D006736 ORTHO05D008459 1.1e-09 67.0 100 44.0
Gohir.A13G130900 Gossypium hirsutum HOM05D006736 ORTHO05D008459 1.1e-09 67.0 100 47.0
Rhsim06G0178800 Rhododendron simsii HOM05D006736 ORTHO05D008459 1.1e-09 67.0 113 39.8
FAN21G1732 Fragaria x ananassa HOM05D006736 ORTHO05D008459 1.5e-09 66.6 107 42.1
EL10Ac4g07540 Beta vulgaris HOM05D006736 ORTHO05D008459 1.9e-09 66.2 109 44.0
Sabra11G0088600 Salix brachista HOM05D006736 ORTHO05D008459 1.9e-09 66.2 51 64.7
AL8G31560 Arabidopsis lyrata HOM05D006736 ORTHO05D008459 2.5e-09 65.9 54 66.7
Aa31LG3G11890 Aethionema arabicum HOM05D006736 ORTHO05D008459 3.3e-09 65.5 110 47.3
AT5G55980 Arabidopsis thaliana HOM05D006736 ORTHO05D008459 3.3e-09 65.5 85 48.2
COL.COLO4_07740 Corchorus olitorius HOM05D006736 ORTHO05D008459 3.3e-09 65.5 99 46.5
Sed0023265 Sechium edule HOM05D006736 ORTHO05D008459 4.3e-09 65.1 64 59.4
CSS0010283 Camellia sinensis var. sinensis HOM05D006736 ORTHO05D008459 7.4e-09 64.3 65 52.3
Aa31LG8G450 Aethionema arabicum HOM05D006736 ORTHO05D008459 9.6e-09 63.9 75 53.3
Migut.M00067 Erythranthe guttata HOM05D006736 ORTHO05D008459 9.6e-09 63.9 98 43.9
Manes.01G003400 Manihot esculenta HOM05D006736 ORTHO05D008459 9.6e-09 63.9 39 76.9
Oeu036994.1 Olea europaea HOM05D006736 ORTHO05D008459 9.6e-09 63.9 62 54.8
Solyc12g006220.3 Solanum lycopersicum HOM05D006736 ORTHO05D008459 9.6e-09 63.9 58 58.6
arahy.Tifrunner.gnm1.ann1.FR49Y0 Arachis hypogaea HOM05D006736 ORTHO05D008459 1.3e-08 63.5 50 64.0
arahy.Tifrunner.gnm1.ann1.P4RFEM Arachis hypogaea HOM05D006736 ORTHO05D008459 1.3e-08 63.5 50 64.0
RcHm_v2.0_Chr5g0075611 Rosa chinensis HOM05D006736 ORTHO05D008459 1.3e-08 63.5 119 37.8
BcaB01g04378 Brassica carinata HOM05D006736 ORTHO05D008459 2.1e-08 62.8 92 47.8
Ciclev10010675m.g Citrus clementina HOM05D006736 ORTHO05D008459 2.1e-08 62.8 75 53.3
Sopen12g002170 Solanum pennellii HOM05D006736 ORTHO05D008459 2.1e-08 62.8 82 48.8
Carub.0008s1632 Capsella rubella HOM05D006736 ORTHO05D008459 2.8e-08 62.4 56 66.1
Sed0014616 Sechium edule HOM05D006736 ORTHO05D008459 3.7e-08 62.0 116 34.5
Manes.05G200400 Manihot esculenta HOM05D006736 ORTHO05D008459 6.2e-08 61.2 60 55.0
DCAR_008749 Daucus carota HOM05D006736 ORTHO05D008459 8.1e-08 60.8 56 55.4
Peaxi162Scf00047g02119 Petunia axillaris HOM05D006736 ORTHO05D008459 8.1e-08 60.8 55 56.4
Migut.H01277 Erythranthe guttata HOM05D006736 ORTHO05D008459 3.1e-07 58.9 74 44.6
MD03G1035000 Malus domestica HOM05D006736 ORTHO05D008459 3.1e-07 58.9 62 56.5
Solyc07g045200.1 Solanum lycopersicum HOM05D006736 ORTHO05D008459 3.1e-07 58.9 44 63.6
CiPaw.06G067400 Carya illinoinensis HOM05D007247 ORTHO05D009208 6.9e-07 57.8 73 50.7
Hma1.2p1_0599F.1_g186970 Hydrangea macrophylla HOM05D006736 ORTHO05D008459 6.9e-07 57.8 97 44.3
TAR622G0973 Trochodendron aralioides HOM05D007247 ORTHO05D009208 6.9e-07 57.8 61 49.2
Ciclev10033189m.g Citrus clementina HOM05D007247 ORTHO05D009208 9.0e-07 57.4 86 41.9
ECA234G2793 Erigeron canadensis HOM05D006736 ORTHO05D008459 9.0e-07 57.4 58 53.4
Sopen07g023750 Solanum pennellii HOM05D006736 ORTHO05D008459 9.0e-07 57.4 102 42.2
THA.LOC104822717 Tarenaya hassleriana HOM05D006736 ORTHO05D008459 9.0e-07 57.4 96 36.5
SGA_v2.0_scaffold49G18393 Striga asiatica HOM05D006736 ORTHO05D008459 1.2e-06 57.0 100 42.0
Dinv15222 Davidia involucrata HOM05D007247 ORTHO05D009208 1.5e-06 56.6 73 47.9
Peaxi162Scf01164g00020 Petunia axillaris HOM05D006736 ORTHO05D008459 1.5e-06 56.6 79 43.0
Atru.chr11.2143 Acer truncatum HOM05D007247 ORTHO05D009208 2.0e-06 56.2 89 39.3
SGA_v2.0_scaffold73G24482 Striga asiatica HOM05D002257 ORTHO05D002417 2.0e-06 56.2 98 40.8
Atru.chr2.3834 Acer truncatum HOM05D006736 ORTHO05D008459 2.6e-06 55.8 67 50.7
BcaB06g25478 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-06 55.8 46 63.0
BcaC05g29199 Brassica carinata HOM05D006736 ORTHO05D008459 2.6e-06 55.8 46 63.0
BolC5t34141H Brassica oleracea HOM05D006736 ORTHO05D008459 2.6e-06 55.8 46 63.0
Carub.0003s1260 Capsella rubella HOM05D006736 ORTHO05D008459 3.4e-06 55.5 53 56.6
Gohir.D01G078200 Gossypium hirsutum HOM05D006736 ORTHO05D008459 3.4e-06 55.5 35 74.3
Gorai.002G102800 Gossypium raimondii HOM05D006736 ORTHO05D008459 3.4e-06 55.5 35 74.3
PGR083G0815 Punica granatum HOM05D006736 ORTHO05D008459 3.4e-06 55.5 107 34.6
HanXRQChr12g0385811 Helianthus annuus HOM05D007247 ORTHO05D009208 4.5e-06 55.1 58 50.0
GSVIVG01005747001 Vitis vinifera HOM05D000233 ORTHO05D000020 4.5e-06 55.1 41 63.4
CiPaw.05G181400 Carya illinoinensis HOM05D007247 ORTHO05D009208 5.8e-06 54.7 43 62.8
Lsat_1_v5_gn_4_4161 Lactuca sativa HOM05D007247 ORTHO05D009208 7.6e-06 54.3 59 50.8
MBI14_g39127_MAGBIO Magnolia biondii HOM05D006736 ORTHO05D008459 7.6e-06 54.3 61 47.5
QL03p057801 Quercus lobata HOM05D007247 ORTHO05D009208 7.6e-06 54.3 83 44.6
MSTRG.13349 Avicennia marina HOM05D007247 ORTHO05D009208 1.0e-05 53.9 74 43.2
BcaC08g46018 Brassica carinata HOM05D007247 ORTHO05D009208 1.0e-05 53.9 59 52.5
A07p32290 Brassica napus HOM05D007247 ORTHO05D009208 1.0e-05 53.9 59 52.5
C06p38130 Brassica napus HOM05D007247 ORTHO05D009208 1.0e-05 53.9 59 52.5
BolC6t38910H Brassica oleracea HOM05D007247 ORTHO05D009208 1.0e-05 53.9 59 52.5
BraA07t30854Z Brassica rapa HOM05D007247 ORTHO05D009208 1.0e-05 53.9 59 52.5


User provided reference genes

Program Settings