Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G324900 Glycine max HOM05D004336 ORTHO05D005367 8.4e-301 1036.2 502 100.0
Glyma.18G085100 Glycine max HOM05D004336 ORTHO05D005367 1.6e-272 942.2 507 92.1
Glyma.08G324800 Glycine max HOM05D004336 ORTHO05D005367 1.5e-249 865.9 506 82.4
Glyma.18G085200 Glycine max HOM05D004336 ORTHO05D005367 1.4e-247 859.4 507 82.4
Phvul.006G051000 Phaseolus vulgaris HOM05D004336 ORTHO05D005367 1.2e-246 856.3 508 82.7
VMungo0540G2288 Vigna mungo HOM05D004336 ORTHO05D005367 1.6e-238 829.3 540 77.8
Lj6g0007567 Lotus japonicus HOM05D004336 ORTHO05D005367 2.8e-224 781.9 513 76.8
arahy.Tifrunner.gnm1.ann1.KR0ZCF Arachis hypogaea HOM05D004336 ORTHO05D005367 2.3e-218 762.3 513 74.1
Psat5g171920 Pisum sativum HOM05D004336 ORTHO05D005367 2.3e-218 762.3 512 75.8
arahy.Tifrunner.gnm1.ann1.K6BPDT Arachis hypogaea HOM05D004336 ORTHO05D005367 2.9e-216 755.4 519 72.8
Medtr3g055690 Medicago truncatula HOM05D004336 ORTHO05D005367 1.1e-212 743.4 506 73.9
Ca_14783_v3 Cicer arietinum L. HOM05D004336 ORTHO05D005367 4.3e-212 741.5 518 73.2
Lalb_Chr18g0050361 Lupinus albus HOM05D004336 ORTHO05D005367 2.6e-209 732.3 514 71.2
Cfa020245 Carpinus fangiana HOM05D004336 ORTHO05D005367 4.0e-202 708.4 510 71.6
Prupe.4G229800 Prunus persica HOM05D004336 ORTHO05D005367 1.9e-199 699.5 517 69.2
Haze_09771 Corylus avellana HOM05D004336 ORTHO05D005367 4.1e-199 698.4 507 71.6
MD03G1190200 Malus domestica HOM05D004336 ORTHO05D005367 7.1e-199 697.6 520 68.7
PGR083G2301 Punica granatum HOM05D004336 ORTHO05D005367 1.6e-198 696.4 517 66.9
RcHm_v2.0_Chr5g0041971 Rosa chinensis HOM05D004336 ORTHO05D005367 6.6e-197 691.0 510 69.6
TWI38G0192 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 1.2e-195 686.8 516 68.0
ClCG09G020990 Citrullus lanatus HOM05D004336 ORTHO05D005367 2.1e-195 686.0 508 66.9
FvH4_3g23790 Fragaria vesca HOM05D004336 ORTHO05D005367 1.1e-194 683.7 514 68.7
FAN11G0890 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.1e-194 683.7 514 68.7
FAN25G1677 Fragaria x ananassa HOM05D004336 ORTHO05D005367 1.4e-194 683.3 514 68.7
CiPaw.11G199400 Carya illinoinensis HOM05D004336 ORTHO05D005367 1.8e-194 682.9 508 68.9
CSS0041250 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.8e-194 681.0 515 67.6
CSS0047700 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 6.8e-194 681.0 515 67.6
Thecc.07G024300 Theobroma cacao HOM05D004336 ORTHO05D005367 2.6e-193 679.1 511 65.6
CsaV3_7G018720 Cucumis sativus L. HOM05D004336 ORTHO05D005367 7.6e-193 677.6 508 66.1
TWI38G0059 Tripterygium wilfordii HOM05D004336 ORTHO05D005367 9.9e-193 677.2 517 66.5
Cpa.g.sc12.209 Carica papaya HOM05D004336 ORTHO05D005367 2.2e-192 676.0 515 65.2
Duzib170G1061 Durio zibethinus HOM05D004336 ORTHO05D005367 3.8e-192 675.2 513 65.1
FAN21G2219 Fragaria x ananassa HOM05D004336 ORTHO05D005367 6.4e-192 674.5 523 67.5
COL.COLO4_09762 Corchorus olitorius HOM05D004336 ORTHO05D005367 1.9e-191 672.9 512 65.6
CSS0014417 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-191 672.2 515 67.0
CSS0044060 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 3.2e-191 672.2 515 67.0
Actinidia05042 Actinidia chinensis HOM05D004336 ORTHO05D005367 1.6e-190 669.8 519 64.7
Nn1g03279 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.0e-189 667.2 532 63.3
Nn1g03281 Nelumbo nucifera HOM05D004336 ORTHO05D005367 1.0e-189 667.2 532 63.3
TAR627G0502 Trochodendron aralioides HOM05D004336 ORTHO05D005367 1.0e-189 667.2 528 64.4
Aqoxy1G04042 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 3.9e-189 665.2 521 64.1
Gohir.A01G085900 Gossypium hirsutum HOM05D004336 ORTHO05D005367 3.9e-189 665.2 511 64.8
Potri.001G360600 Populus trichocarpa HOM05D004336 ORTHO05D005367 5.1e-189 664.8 514 65.8
Dinv40824 Davidia involucrata HOM05D004336 ORTHO05D005367 4.3e-188 661.8 527 64.3
Actinidia00105 Actinidia chinensis HOM05D004336 ORTHO05D005367 9.6e-188 660.6 514 64.8
Gorai.002G095200 Gossypium raimondii HOM05D004336 ORTHO05D005367 2.1e-187 659.4 510 64.1
Sed0027079 Sechium edule HOM05D004336 ORTHO05D005367 1.1e-186 657.1 509 64.6
PGSC0003DMG400022194 Solanum tuberosum HOM05D004336 ORTHO05D005367 1.1e-186 657.1 522 63.4
Aqoxy4G01189 Aquilegia oxysepala HOM05D004336 ORTHO05D005367 1.4e-186 656.8 517 65.2
MSTRG.13007 Avicennia marina HOM05D004336 ORTHO05D005367 3.1e-186 655.6 516 63.6
Peaxi162Scf00285g00932 Petunia axillaris HOM05D004336 ORTHO05D005367 4.0e-186 655.2 508 64.6
Sed0018719 Sechium edule HOM05D004336 ORTHO05D005367 9.0e-186 654.1 502 64.9
Migut.H01779 Erythranthe guttata HOM05D004336 ORTHO05D005367 7.6e-185 651.0 505 62.8
Sopen07g033360 Solanum pennellii HOM05D004336 ORTHO05D005367 7.6e-185 651.0 520 62.5
Solyc07g065140.4 Solanum lycopersicum HOM05D004336 ORTHO05D005367 1.7e-184 649.8 533 61.5
Nitab4.5_0010102g0040 Nicotiana tabacum HOM05D004336 ORTHO05D005367 2.9e-184 649.0 510 62.7
Eucgr.F03516 Eucalyptus grandis HOM05D004336 ORTHO05D005367 4.9e-184 648.3 502 64.3
HanXRQChr17g0546171 Helianthus annuus HOM05D004336 ORTHO05D005367 8.4e-184 647.5 514 63.2
Oeu057077.1 Olea europaea HOM05D004336 ORTHO05D005367 8.4e-184 647.5 533 61.9
Oeu057079.1 Olea europaea HOM05D004336 ORTHO05D005367 8.4e-184 647.5 533 61.9
SGA_v2.0_scaffold478G52227 Striga asiatica HOM05D004336 ORTHO05D005367 4.2e-183 645.2 506 63.6
CAN.G337.39 Capsicum annuum HOM05D004336 ORTHO05D005367 9.3e-183 644.0 514 63.0
Eucgr.F00628 Eucalyptus grandis HOM05D004336 ORTHO05D005367 9.3e-183 644.0 534 62.4
Manes.15G064500 Manihot esculenta HOM05D004336 ORTHO05D005367 9.3e-183 644.0 531 62.3
TPR.G23588 Trifolium pratense HOM05D004336 ORTHO05D005367 9.3e-183 644.0 393 80.4
Lj1A883T40 Lonicera japonica HOM05D004336 ORTHO05D005367 2.1e-182 642.9 516 63.6
Nitab4.5_0001160g0150 Nicotiana tabacum HOM05D004336 ORTHO05D005367 3.5e-182 642.1 517 61.9
Thhalv10013238m.g Eutrema salsugineum HOM05D004336 ORTHO05D005367 4.6e-182 641.7 529 62.0
Atru.chr2.3600_Atru.chr2.3601 Acer truncatum HOM05D004336 ORTHO05D005367 1.3e-181 640.2 523 62.9
CSS0031037 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 1.7e-181 639.8 519 63.4
AT5G55500 Arabidopsis thaliana HOM05D004336 ORTHO05D005367 2.3e-181 639.4 537 60.9
vmacro11570 Vaccinium macrocarpon HOM05D004336 ORTHO05D005367 2.3e-181 639.4 509 63.7
Aa31LG3G11440 Aethionema arabicum HOM05D004336 ORTHO05D005367 5.1e-181 638.3 523 62.1
CSS0013990 Camellia sinensis var. sinensis HOM05D004336 ORTHO05D005367 4.3e-180 635.2 519 63.0
Sp6g17380 Schrenkiella parvula HOM05D004336 ORTHO05D005367 1.6e-179 633.3 535 61.3
CARHR268810 Cardamine hirsuta HOM05D004336 ORTHO05D005367 2.8e-179 632.5 545 60.4
Lj8A175T74 Lonicera japonica HOM05D004336 ORTHO05D005367 1.4e-178 630.2 491 65.4
MBI19_g06156_MAGBIO Magnolia biondii HOM05D004336 ORTHO05D005367 1.4e-178 630.2 503 62.6
Carub.0008s1585 Capsella rubella HOM05D004336 ORTHO05D005367 1.8e-178 629.8 543 60.4
PSO302G0308 Papaver somniferum HOM05D004336 ORTHO05D005367 2.0e-177 626.3 520 61.5
AL8G31030 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 3.4e-177 625.5 537 59.8
BolC3t14066H Brassica oleracea HOM05D004336 ORTHO05D005367 3.4e-177 625.5 535 60.7
MELO3C024890.2 Cucumis melo HOM05D004336 ORTHO05D005367 3.4e-177 625.5 509 63.3
Gohir.D01G072200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 9.9e-177 624.0 510 62.2
Gorai.009G445600 Gossypium raimondii HOM05D004336 ORTHO05D005367 9.9e-177 624.0 523 60.4
Gohir.D05G377800 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.9e-176 622.5 523 59.8
A03p14020 Brassica napus HOM05D004336 ORTHO05D005367 7.1e-175 617.8 531 60.5
C03p16460 Brassica napus HOM05D004336 ORTHO05D005367 9.3e-175 617.5 529 60.5
BraA03t10701Z Brassica rapa HOM05D004336 ORTHO05D005367 1.2e-174 617.1 530 60.4
Lsat_1_v5_gn_7_114040 Lactuca sativa HOM05D004336 ORTHO05D005367 1.6e-174 616.7 526 59.9
PSO210G4424 Papaver somniferum HOM05D004336 ORTHO05D005367 6.0e-174 614.8 528 59.8
Gohir.A04G010200 Gossypium hirsutum HOM05D004336 ORTHO05D005367 2.3e-173 612.8 531 59.3
DCAR_016633 Daucus carota HOM05D004336 ORTHO05D005367 3.0e-173 612.5 495 61.8
EL10Ac4g07633 Beta vulgaris HOM05D004336 ORTHO05D005367 2.5e-172 609.4 517 61.5
ATR0712G174 Amborella trichopoda HOM05D004336 ORTHO05D005367 3.3e-172 609.0 515 59.0
Hund23166 Selenicereus undatus HOM05D004336 ORTHO05D005367 9.6e-172 607.4 507 60.2
HPP92_018937 Vanilla planifolia HOM05D004336 ORTHO05D005367 9.6e-172 607.4 504 60.9
Os08g0503800 Oryza sativa ssp. japonica HOM05D004336 ORTHO05D005367 6.9e-170 601.3 449 64.8
THA.LOC104811644 Tarenaya hassleriana HOM05D004336 ORTHO05D005367 2.6e-169 599.4 523 58.5
Ciclev10008121m.g Citrus clementina HOM05D004336 ORTHO05D005367 2.9e-168 595.9 518 59.7
HPP92_018936 Vanilla planifolia HOM05D004336 ORTHO05D005367 4.9e-168 595.1 485 60.6
Hund01925 Selenicereus undatus HOM05D004336 ORTHO05D005367 6.4e-168 594.7 519 58.0
unitig_8.g4786 Utricularia gibba HOM05D004336 ORTHO05D005367 4.6e-166 588.6 505 57.6
Duzib213G0745 Durio zibethinus HOM05D004336 ORTHO05D005367 5.1e-165 585.1 514 58.9
BcaC01g06371 Brassica carinata HOM05D004336 ORTHO05D005367 8.7e-165 584.3 523 58.9
Ah.04g166390 Amaranthus hybridus HOM05D004336 ORTHO05D005367 1.5e-164 583.6 484 59.9
Sc03g0008140 Simmondsia chinensis HOM05D004336 ORTHO05D005367 3.4e-161 572.4 442 63.1
Rhsim06G0225600 Rhododendron simsii HOM05D004336 ORTHO05D005367 2.4e-154 549.7 449 62.8
SHI26554 Sapria himalayana HOM05D004336 ORTHO05D005367 5.3e-154 548.5 434 62.2
ECA236G3940 Erigeron canadensis HOM05D004336 ORTHO05D005367 2.6e-153 546.2 457 60.4
EL10Ac4g07632 Beta vulgaris HOM05D004336 ORTHO05D005367 4.8e-147 525.4 504 55.2
AUR62040678 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.1e-146 524.2 382 66.2
GSVIVG01037759001 Vitis vinifera HOM05D004336 ORTHO05D005367 6.5e-144 515.0 311 78.5
A10p12600 Brassica napus HOM05D004336 ORTHO05D005367 3.2e-143 512.7 437 60.9
QL08p008529 Quercus lobata HOM05D004336 ORTHO05D005367 2.0e-140 503.4 291 81.1
Cc05_g14530 Coffea canephora HOM05D004336 ORTHO05D005367 3.6e-134 482.6 311 71.4
RcHm_v2.0_Chr5g0041921 Rosa chinensis HOM05D004336 ORTHO05D005367 7.4e-132 474.9 303 74.9
CDE07G1634 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 1.1e-130 471.1 311 71.1
AUR62015931 Chenopodium quinoa HOM05D004336 ORTHO05D005367 1.6e-118 430.6 382 57.6
Ah.06g181060 Amaranthus hybridus HOM05D004336 ORTHO05D005367 2.3e-117 426.8 273 73.6
Pp3c14_26580 Physcomitrium patens HOM05D004336 ORTHO05D005367 4.4e-116 422.5 582 40.9
Mapoly0007s0065 Marchantia polymorpha HOM05D004336 ORTHO05D005367 5.7e-116 422.2 538 43.1
SMO347G0076 Selaginella moellendorffii HOM05D004336 ORTHO05D005367 2.8e-115 419.9 493 45.8
QL04p097747 Quercus lobata HOM05D004336 ORTHO05D005367 1.0e-104 384.8 238 77.7
Sabra16G0237900 Salix brachista HOM05D004336 ORTHO05D005367 6.6e-104 382.1 246 75.6
Oeu019622.1 Olea europaea HOM05D004336 ORTHO05D005367 1.3e-99 367.9 239 73.6
BcaB08g35906 Brassica carinata HOM05D004336 ORTHO05D005367 6.0e-89 332.4 522 43.5
RcHm_v2.0_Chr5g0080011 Rosa chinensis HOM05D004336 ORTHO05D005367 2.2e-83 313.9 196 78.1
Zm00001eb034690 Zea mays HOM05D004336 ORTHO05D005367 4.9e-83 312.8 318 51.9
BraA10t43362Z Brassica rapa HOM05D004336 ORTHO05D005367 2.1e-81 307.4 341 50.7
FvH4_3g12320 Fragaria vesca HOM05D004336 ORTHO05D005367 8.9e-77 292.0 200 70.0
MD11G1206800 Malus domestica HOM05D004336 ORTHO05D005367 1.9e-74 284.3 216 64.8
BcaB01g04318 Brassica carinata HOM05D004336 ORTHO05D005367 3.8e-67 260.0 273 54.6
MD11G1206700 Malus domestica HOM05D004336 ORTHO05D005367 2.7e-65 253.8 166 75.3
C09p46150 Brassica napus HOM05D004336 ORTHO05D005367 6.7e-56 222.6 245 51.4
BolC9t57481H Brassica oleracea HOM05D004336 ORTHO05D005367 1.1e-55 221.9 245 51.4
CBR_g22021 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-53 214.5 419 32.0
QL08p008521 Quercus lobata HOM05D004336 ORTHO05D005367 2.4e-53 214.2 216 55.1
C09p46160 Brassica napus HOM05D004336 ORTHO05D005367 3.9e-48 196.8 160 66.9
A04p06990 Brassica napus HOM05D004336 ORTHO05D005367 6.7e-48 196.1 155 60.0
BraA04t16398Z Brassica rapa HOM05D004336 ORTHO05D005367 6.7e-48 196.1 155 60.0
AagrBONN_evm.TU.Sc2ySwM_228.1049 Anthoceros agrestis HOM05D004336 ORTHO05D005367 1.1e-45 188.7 180 53.3
A03p66870 Brassica napus HOM05D004336 ORTHO05D005367 2.4e-45 187.6 124 68.5
Eucgr.I00174 Eucalyptus grandis HOM05D004336 ORTHO05D005367 1.3e-40 171.8 109 74.3
SHI26544 Sapria himalayana HOM05D004336 ORTHO05D005367 9.0e-37 159.1 167 48.5
SEGI_14116 Sequoiadendron giganteum HOM05D004336 ORTHO05D005367 1.9e-34 151.4 282 33.0
BraA01t02793Z Brassica rapa HOM05D004336 ORTHO05D004660 4.2e-34 150.2 106 63.2
SHI40288 Sapria himalayana HOM05D004336 ORTHO05D005367 1.6e-33 148.3 254 40.6
SHI48138 Sapria himalayana HOM05D004336 ORTHO05D005367 6.1e-33 146.4 257 39.7
SHI22211 Sapria himalayana HOM05D004336 ORTHO05D005367 5.1e-32 143.3 252 36.9
MSTRG.14468 Avicennia marina HOM05D004336 ORTHO05D005367 6.7e-32 142.9 155 46.5
Ah.06g181050 Amaranthus hybridus HOM05D004336 ORTHO05D005367 7.7e-28 129.4 207 39.6
TAR627G0477 Trochodendron aralioides HOM05D000054 ORTHO05D000171 2.9e-27 127.5 98 64.3
BcaC04g20358 Brassica carinata HOM05D003513 ORTHO05D004660 6.5e-27 126.3 76 72.4
BolC9t57326H Brassica oleracea HOM05D004336 ORTHO05D005367 6.5e-27 126.3 76 72.4
AL8G29720 Arabidopsis lyrata HOM05D004336 ORTHO05D005367 5.5e-26 123.2 98 63.3
CDE07G0680 Ceratophyllum demersum HOM05D004336 ORTHO05D005367 5.7e-23 113.2 157 44.6
BcaB05g23098 Brassica carinata HOM05D004336 ORTHO05D005367 2.8e-22 110.9 85 60.0
RcHm_v2.0_Chr5g0079391 Rosa chinensis HOM05D004336 ORTHO05D005367 2.0e-20 104.8 100 59.0
BcaB01g04317 Brassica carinata HOM05D004336 ORTHO05D005367 2.7e-17 94.4 71 67.6
A03p61430 Brassica napus HOM05D003513 ORTHO05D004660 1.1e-13 82.4 59 64.4
HanXRQChr04g0109771 Helianthus annuus HOM05D004336 ORTHO05D005367 1.8e-13 81.6 88 44.3
TAR612G0001 Trochodendron aralioides HOM05D000054 ORTHO05D000171 1.2e-07 62.4 35 85.7
AagrBONN_evm.TU.Sc2ySwM_228.1050 Anthoceros agrestis HOM05D004336 ORTHO05D005367 2.8e-06 57.8 220 25.9


User provided reference genes

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