Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G323300 Glycine max HOM05D004902 ORTHO05D006603 4.1e-124 448.0 209 100.0
Glyma.18G093200 Glycine max HOM05D004902 ORTHO05D006603 4.2e-81 305.1 208 75.0
Phvul.006G046400 Phaseolus vulgaris HOM05D004902 ORTHO05D006603 7.2e-81 304.3 208 73.1
Glyma.18G108300 Glycine max HOM05D004902 ORTHO05D006603 2.8e-80 302.4 208 74.5
Lj4g0024994 Lotus japonicus HOM05D004902 ORTHO05D006603 1.3e-77 293.5 210 69.5
Medtr3g052850 Medicago truncatula HOM05D004902 ORTHO05D006603 1.7e-77 293.1 208 70.2
Psat5g177120 Pisum sativum HOM05D004902 ORTHO05D006603 2.2e-77 292.7 210 71.4
TPR.G33794 Trifolium pratense HOM05D004902 ORTHO05D006603 3.7e-77 292.0 210 71.0
Ca_14752_v3 Cicer arietinum L. HOM05D004902 ORTHO05D006603 5.4e-76 288.1 208 70.2
Hma1.2p1_0036F.1_g023430 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 5.4e-76 288.1 208 69.2
Hma1.2p1_0036F.1_g023440 Hydrangea macrophylla HOM05D004902 ORTHO05D006603 5.4e-76 288.1 208 69.2
CSS0000094 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.2e-75 287.0 208 67.8
CSS0007833 Camellia sinensis var. sinensis HOM05D004902 ORTHO05D006603 1.6e-75 286.6 208 67.8
MD03G1198000 Malus domestica HOM05D004902 ORTHO05D006603 3.5e-75 285.4 210 68.1
arahy.Tifrunner.gnm1.ann1.67NMHM Arachis hypogaea HOM05D004902 ORTHO05D006603 5.9e-75 284.6 208 68.8
arahy.Tifrunner.gnm1.ann1.E3581I Arachis hypogaea HOM05D004902 ORTHO05D006603 5.9e-75 284.6 208 68.8
QL08p009339 Quercus lobata HOM05D004902 ORTHO05D006603 7.8e-75 284.3 208 69.7
Prupe.4G217200 Prunus persica HOM05D004902 ORTHO05D006603 1.0e-74 283.9 208 68.8
Thecc.09G123200 Theobroma cacao HOM05D004902 ORTHO05D006603 1.3e-74 283.5 208 67.8
FAN18G4155 Fragaria x ananassa HOM05D004902 ORTHO05D006603 2.3e-74 282.7 206 70.4
Ciclev10007818m.g Citrus clementina HOM05D004902 ORTHO05D006603 5.0e-74 281.6 208 66.8
Lj1A876G36 Lonicera japonica HOM05D004902 ORTHO05D006603 5.0e-74 281.6 208 66.8
Dinv40776 Davidia involucrata HOM05D004902 ORTHO05D006603 8.6e-74 280.8 208 66.3
Lalb_Chr10g0107081 Lupinus albus HOM05D004902 ORTHO05D006603 1.1e-73 280.4 208 67.3
MSTRG.12985 Avicennia marina HOM05D004902 ORTHO05D006603 2.5e-73 279.3 208 65.9
AUR62026758 Chenopodium quinoa HOM05D004902 ORTHO05D006603 2.5e-73 279.3 216 65.3
COL.COLO4_19537 Corchorus olitorius HOM05D004902 ORTHO05D006603 2.5e-73 279.3 208 66.3
TAR362G0117 Trochodendron aralioides HOM05D004902 ORTHO05D006603 3.3e-73 278.9 208 67.3
FAN13G3021 Fragaria x ananassa HOM05D004902 ORTHO05D006603 4.3e-73 278.5 213 68.1
Potri.001G267400 Populus trichocarpa HOM05D004902 ORTHO05D006603 5.6e-73 278.1 208 65.9
FAN04G1963 Fragaria x ananassa HOM05D004902 ORTHO05D006603 7.3e-73 277.7 206 69.4
Manes.03G132000 Manihot esculenta HOM05D004902 ORTHO05D006603 9.5e-73 277.3 210 67.1
Hund26666 Selenicereus undatus HOM05D004902 ORTHO05D006603 9.5e-73 277.3 219 66.7
Potri.009G061700 Populus trichocarpa HOM05D004902 ORTHO05D006603 1.2e-72 276.9 210 66.2
Rhsim06G0219700 Rhododendron simsii HOM05D004902 ORTHO05D006603 1.2e-72 276.9 211 66.4
CiPaw.11G191900 Carya illinoinensis HOM05D004902 ORTHO05D006603 2.1e-72 276.2 208 67.3
Gohir.A11G067600 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.1e-72 276.2 208 65.9
MSTRG.14441 Avicennia marina HOM05D004902 ORTHO05D006603 3.6e-72 275.4 208 64.9
Nn8g38868 Nelumbo nucifera HOM05D004902 ORTHO05D006603 3.6e-72 275.4 208 64.9
PGSC0003DMG400022211 Solanum tuberosum HOM05D004902 ORTHO05D006603 4.7e-72 275.0 208 66.8
Atru.chr2.3483 Acer truncatum HOM05D004902 ORTHO05D006603 6.1e-72 274.6 210 66.7
Sc02g0003710 Simmondsia chinensis HOM05D004902 ORTHO05D006603 6.1e-72 274.6 208 65.9
SGA_v2.0_scaffold172G39008 Striga asiatica HOM05D004902 ORTHO05D006603 6.1e-72 274.6 206 66.0
RcHm_v2.0_Chr5g0040671 Rosa chinensis HOM05D004902 ORTHO05D006603 8.0e-72 274.2 208 67.8
GSVIVG01037683001 Vitis vinifera HOM05D004902 ORTHO05D006603 8.0e-72 274.2 210 66.7
ClCG09G010930 Citrullus lanatus HOM05D004902 ORTHO05D006603 1.4e-71 273.5 210 65.2
FvH4_5g29730 Fragaria vesca HOM05D004902 ORTHO05D006603 1.4e-71 273.5 206 68.0
Aqoxy5G00324 Aquilegia oxysepala HOM05D004902 ORTHO05D006603 1.8e-71 273.1 208 65.9
CAN.G337.72 Capsicum annuum HOM05D004902 ORTHO05D006603 1.8e-71 273.1 208 65.4
Gorai.007G076800 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.8e-71 273.1 208 64.9
TWI39G0824 Tripterygium wilfordii HOM05D004902 ORTHO05D006603 1.8e-71 273.1 210 66.7
Gohir.D11G071500 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.3e-71 272.7 208 64.9
Sabra16G0163900 Salix brachista HOM05D004902 ORTHO05D006603 2.3e-71 272.7 215 64.7
Sp7g24850 Schrenkiella parvula HOM05D004902 ORTHO05D006603 2.3e-71 272.7 208 64.4
CsaV3_7G021940 Cucumis sativus L. HOM05D004902 ORTHO05D006603 3.1e-71 272.3 210 65.7
MELO3C013152.2 Cucumis melo HOM05D004902 ORTHO05D006603 4.0e-71 271.9 210 65.2
Solyc07g064810.3 Solanum lycopersicum HOM05D004902 ORTHO05D006603 5.2e-71 271.6 208 65.9
Sopen07g033000 Solanum pennellii HOM05D004902 ORTHO05D006603 5.2e-71 271.6 208 65.9
AL7G25950 Arabidopsis lyrata HOM05D004902 ORTHO05D006603 8.9e-71 270.8 208 64.4
Thhalv10024744m.g Eutrema salsugineum HOM05D004902 ORTHO05D006603 8.9e-71 270.8 208 63.9
Oeu062577.2 Olea europaea HOM05D004902 ORTHO05D006603 8.9e-71 270.8 214 65.4
CDE02G3624 Ceratophyllum demersum HOM05D004902 ORTHO05D006603 1.2e-70 270.4 208 63.9
C04p45770 Brassica napus HOM05D004902 ORTHO05D006603 1.5e-70 270.0 208 63.5
Carub.0007s1395 Capsella rubella HOM05D004902 ORTHO05D006603 1.5e-70 270.0 208 64.4
Duzib264G0382 Durio zibethinus HOM05D004902 ORTHO05D006603 2.6e-70 269.2 208 64.9
Actinidia10742 Actinidia chinensis HOM05D004902 ORTHO05D006603 4.4e-70 268.5 202 65.8
AT4G26900 Arabidopsis thaliana HOM05D004902 ORTHO05D006603 5.8e-70 268.1 208 63.5
Sed0009199 Sechium edule HOM05D004902 ORTHO05D006603 5.8e-70 268.1 210 64.8
BolC1t02242H Brassica oleracea HOM05D004902 ORTHO05D006603 7.5e-70 267.7 208 63.5
Migut.M01740 Erythranthe guttata HOM05D004902 ORTHO05D006603 7.5e-70 267.7 206 63.1
Oeu013136.2 Olea europaea HOM05D004902 ORTHO05D006603 7.5e-70 267.7 208 64.9
BcaB06g27301 Brassica carinata HOM05D004902 ORTHO05D006603 9.8e-70 267.3 208 63.0
BolC4t26162H Brassica oleracea HOM05D004902 ORTHO05D006603 9.8e-70 267.3 208 63.0
THA.LOC104811618 Tarenaya hassleriana HOM05D004902 ORTHO05D006603 9.8e-70 267.3 208 64.4
C01p23080 Brassica napus HOM05D004902 ORTHO05D006603 2.9e-69 265.8 208 63.0
BraA04t16876Z Brassica rapa HOM05D004902 ORTHO05D006603 2.9e-69 265.8 210 63.8
CARHR234510 Cardamine hirsuta HOM05D004902 ORTHO05D006603 3.7e-69 265.4 208 63.5
ATR0736G184 Amborella trichopoda HOM05D004902 ORTHO05D006603 8.3e-69 264.2 209 63.2
CANSAT11G1621 Cannabis sativa HOM05D004902 ORTHO05D006603 8.3e-69 264.2 208 63.9
Gorai.011G209600 Gossypium raimondii HOM05D004902 ORTHO05D006603 1.1e-68 263.8 208 63.5
Lsat_1_v5_gn_5_3021 Lactuca sativa HOM05D004902 ORTHO05D006603 1.1e-68 263.8 208 63.5
Aa31LG3G11010 Aethionema arabicum HOM05D004902 ORTHO05D006603 1.9e-68 263.1 208 63.0
Cfa020314 Carpinus fangiana HOM05D004902 ORTHO05D006603 2.4e-68 262.7 208 63.9
Gohir.D10G186800 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.4e-68 262.7 208 63.0
HanXRQChr05g0159411 Helianthus annuus HOM05D004902 ORTHO05D006603 2.4e-68 262.7 210 65.2
Nitab4.5_0022774g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 4.1e-68 261.9 208 65.4
A04p12110 Brassica napus HOM05D004902 ORTHO05D006603 2.0e-67 259.6 209 61.7
HanXRQChr08g0233501 Helianthus annuus HOM05D004902 ORTHO05D006603 2.0e-67 259.6 210 63.8
Eucgr.F00742 Eucalyptus grandis HOM05D004902 ORTHO05D006603 2.3e-66 256.1 208 60.1
EL10Ac1g01638 Beta vulgaris HOM05D004902 ORTHO05D006603 3.0e-66 255.8 208 63.9
PGR083G1168 Punica granatum HOM05D004902 ORTHO05D006603 7.3e-65 251.1 210 61.9
HPP92_013494 Vanilla planifolia HOM05D004902 ORTHO05D006603 7.3e-65 251.1 208 59.6
ECA246G3742 Erigeron canadensis HOM05D004902 ORTHO05D006603 1.2e-64 250.4 208 63.5
MD11G1213900 Malus domestica HOM05D004902 ORTHO05D006603 1.6e-64 250.0 131 87.0
BcaNung03568 Brassica carinata HOM05D004902 ORTHO05D006603 3.6e-64 248.8 208 62.0
HPP92_026047 Vanilla planifolia HOM05D004902 ORTHO05D006603 6.2e-64 248.1 208 59.6
Cpa.g.c34168 Carica papaya HOM05D004902 ORTHO05D006603 6.4e-61 238.0 129 83.7
Ah.13g076200 Amaranthus hybridus HOM05D004902 ORTHO05D006603 8.3e-61 237.7 208 58.7
CAN.G677.16 Capsicum annuum HOM05D004902 ORTHO05D006603 1.4e-60 236.9 199 61.3
vmacro02220 Vaccinium macrocarpon HOM05D004902 ORTHO05D006603 3.2e-60 235.7 208 58.7
Haze_09705 Corylus avellana HOM05D004902 ORTHO05D006603 7.0e-60 234.6 208 58.2
PSO210G2842 Papaver somniferum HOM05D004902 ORTHO05D006603 3.5e-59 232.3 129 83.7
Os03g0256400 Oryza sativa ssp. japonica HOM05D004902 ORTHO05D006603 4.6e-59 231.9 208 55.8
PSO832G3378 Papaver somniferum HOM05D004902 ORTHO05D006603 3.0e-58 229.2 129 82.2
FAN08G0007 Fragaria x ananassa HOM05D004902 ORTHO05D006603 3.9e-58 228.8 206 58.3
SMO119G0352 Selaginella moellendorffii HOM05D004902 ORTHO05D006603 3.1e-55 219.2 207 52.2
Peaxi162Scf00235g00424 Petunia axillaris HOM05D004902 ORTHO05D006603 1.2e-54 217.2 248 51.2
AagrBONN_evm.TU.Sc2ySwM_117.3547 Anthoceros agrestis HOM05D004902 ORTHO05D006603 1.5e-54 216.9 209 51.7
Gohir.A10G179900 Gossypium hirsutum HOM05D004902 ORTHO05D006603 2.6e-54 216.1 209 56.9
Mapoly0071s0086 Marchantia polymorpha HOM05D004902 ORTHO05D006603 4.9e-53 211.8 213 49.3
Pp3c1_20280 Physcomitrium patens HOM05D004902 ORTHO05D006603 7.8e-51 204.5 209 51.2
CBR_g4356 Chara braunii HOM05D004902 ORTHO05D006603 1.6e-48 196.8 206 48.5
MCO02G311 Micromonas commoda HOM05D004902 ORTHO05D006603 2.1e-43 179.9 209 45.5
AUR62013514 Chenopodium quinoa HOM05D004902 ORTHO05D006603 7.3e-41 171.4 160 53.8
DCAR_022578 Daucus carota HOM05D004902 ORTHO05D006603 8.1e-40 167.9 115 70.4
SEGI_31768 Sequoiadendron giganteum HOM05D004902 ORTHO05D006603 1.2e-38 164.1 118 64.4
PRCOL_00006765 Prasinoderma coloniale HOM05D004902 ORTHO05D006603 1.5e-38 163.7 211 41.2
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.7e-34 150.2 129 58.1
Cfa025092 Carpinus fangiana HOM05D004902 ORTHO05D006603 3.2e-28 129.4 218 39.0
Nitab4.5_0013139g0010 Nicotiana tabacum HOM05D004902 ORTHO05D006603 1.2e-27 127.5 134 53.7
unitig_85.g27329 Utricularia gibba HOM05D004902 ORTHO05D006603 1.2e-27 127.5 206 40.3
HanXRQChr08g0233821 Helianthus annuus HOM05D004902 ORTHO05D006603 3.7e-24 115.9 146 45.9
TPR.G39977 Trifolium pratense HOM05D004902 ORTHO05D006603 2.4e-15 86.7 43 90.7
VMungo0540G1125 Vigna mungo HOM05D004902 ORTHO05D006603 6.5e-13 78.6 39 92.3
Lsat_1_v5_gn_3_2301 Lactuca sativa HOM05D004902 ORTHO05D006603 1.3e-10 70.9 34 94.1
BraA01t01766Z Brassica rapa HOM05D004902 ORTHO05D006603 1.8e-10 70.5 42 78.6
GSVIVG01021644001 Vitis vinifera HOM05D004902 ORTHO05D024725 5.7e-09 65.5 35 77.1
Zm00001eb011150 Zea mays HOM05D004902 ORTHO05D006603 1.1e-07 61.2 93 41.9


User provided reference genes

Program Settings