Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G321000 Glycine max HOM05D007019 ORTHO05D008398 4.5e-270 934.1 504 100.0
Glyma.18G091000 Glycine max HOM05D007019 ORTHO05D008398 6.1e-243 844.0 497 91.5
VMungo0540G1233 Vigna mungo HOM05D007019 ORTHO05D008398 1.4e-226 789.6 497 87.1
Phvul.006G047900 Phaseolus vulgaris HOM05D007019 ORTHO05D008398 8.6e-221 770.4 497 83.5
Lj6g0025581 Lotus japonicus HOM05D007019 ORTHO05D008398 8.3e-216 753.8 498 80.9
Lalb_Chr15g0081591 Lupinus albus HOM05D007019 ORTHO05D008398 3.0e-213 745.3 497 79.5
arahy.Tifrunner.gnm1.ann1.MG10WM Arachis hypogaea HOM05D007019 ORTHO05D008398 2.6e-209 732.3 497 79.5
arahy.Tifrunner.gnm1.ann1.SS16UG Arachis hypogaea HOM05D007019 ORTHO05D008398 3.4e-209 731.9 497 79.5
Psat5g174160 Pisum sativum HOM05D007019 ORTHO05D008398 5.4e-207 724.5 498 77.7
Ca_26389_v3 Cicer arietinum L. HOM05D007019 ORTHO05D008398 1.9e-204 716.1 496 78.6
Medtr3g053700 Medicago truncatula HOM05D007019 ORTHO05D008398 1.7e-200 703.0 497 75.9
TPR.G32253 Trifolium pratense HOM05D007019 ORTHO05D008398 1.9e-196 689.5 504 73.4
Cfa013011 Carpinus fangiana HOM05D007019 ORTHO05D008398 8.7e-189 664.1 501 73.7
CiPaw.07G232900 Carya illinoinensis HOM05D007019 ORTHO05D008398 1.4e-186 656.8 499 70.1
QL02p018053 Quercus lobata HOM05D007019 ORTHO05D008398 2.9e-184 649.0 498 72.7
Potri.018G016200 Populus trichocarpa HOM05D007019 ORTHO05D008398 1.3e-181 640.2 496 69.6
Manes.16G132200 Manihot esculenta HOM05D007019 ORTHO05D008398 8.7e-181 637.5 499 68.9
Gorai.009G064200 Gossypium raimondii HOM05D007019 ORTHO05D008398 1.0e-176 624.0 501 69.9
TWI32G0429 Tripterygium wilfordii HOM05D007019 ORTHO05D008398 1.3e-176 623.6 499 67.1
Actinidia14141 Actinidia chinensis HOM05D007019 ORTHO05D008398 8.4e-176 620.9 499 69.3
Hma1.2p1_0737F.1_g210790 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 1.4e-175 620.2 503 68.6
Thecc.09G013400 Theobroma cacao HOM05D007019 ORTHO05D008398 1.4e-175 620.2 502 70.1
Lj7A737G40 Lonicera japonica HOM05D007019 ORTHO05D008398 9.3e-175 617.5 511 67.3
Atru.chr7.2574 Acer truncatum HOM05D007019 ORTHO05D008398 4.6e-174 615.1 496 67.5
Prupe.1G396900 Prunus persica HOM05D007019 ORTHO05D008398 6.0e-174 614.8 502 68.7
Eucgr.C04032 Eucalyptus grandis HOM05D007019 ORTHO05D008398 3.0e-173 612.5 501 66.7
MSTRG.1627 Avicennia marina HOM05D007019 ORTHO05D008398 4.3e-172 608.6 495 66.5
CANSAT25G0065 Cannabis sativa HOM05D007019 ORTHO05D008398 4.3e-172 608.6 498 65.7
Duzib168G1437 Durio zibethinus HOM05D007019 ORTHO05D008398 5.7e-172 608.2 504 68.8
MELO3C011312.2 Cucumis melo HOM05D007019 ORTHO05D008398 9.6e-172 607.4 500 68.2
FvH4_2g41350 Fragaria vesca HOM05D007019 ORTHO05D008398 9.6e-172 607.4 498 67.1
Ciclev10008089m.g Citrus clementina HOM05D007019 ORTHO05D008398 1.3e-171 607.1 499 67.5
ClCG08G013800 Citrullus lanatus HOM05D007019 ORTHO05D008398 1.8e-170 603.2 500 68.4
PGR044G2245 Punica granatum HOM05D007019 ORTHO05D008398 3.1e-170 602.4 502 65.5
CSS0016918 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 1.5e-169 600.1 499 67.3
CSS0023374 Camellia sinensis var. sinensis HOM05D007019 ORTHO05D008398 1.5e-169 600.1 499 67.3
RcHm_v2.0_Chr6g0299181 Rosa chinensis HOM05D007019 ORTHO05D008398 1.5e-169 600.1 498 65.7
CsaV3_2G032590 Cucumis sativus L. HOM05D007019 ORTHO05D008398 3.8e-168 595.5 500 67.2
Gohir.A05G061000 Gossypium hirsutum HOM05D007019 ORTHO05D008398 8.5e-168 594.3 501 68.1
Gohir.D05G063200 Gossypium hirsutum HOM05D007019 ORTHO05D008398 1.4e-167 593.6 501 67.7
COL.COLO4_18972 Corchorus olitorius HOM05D007019 ORTHO05D008398 5.5e-167 591.7 503 67.4
Nn6g33490 Nelumbo nucifera HOM05D007019 ORTHO05D008398 1.2e-166 590.5 515 65.0
Rhsim02G0217600 Rhododendron simsii HOM05D007019 ORTHO05D008398 1.6e-166 590.1 506 63.6
Sed0002524 Sechium edule HOM05D007019 ORTHO05D008398 1.6e-166 590.1 506 64.4
Sabra18G0019700 Salix brachista HOM05D007019 ORTHO05D008398 3.6e-166 589.0 525 63.8
Migut.E01445 Erythranthe guttata HOM05D007019 ORTHO05D008398 1.5e-164 583.6 496 63.7
Cc00_g05220 Coffea canephora HOM05D007019 ORTHO05D008398 3.7e-163 578.9 496 65.9
FAN27G2994 Fragaria x ananassa HOM05D007019 ORTHO05D008398 3.7e-163 578.9 494 65.0
DCAR_003030 Daucus carota HOM05D007019 ORTHO05D008398 1.4e-162 577.0 501 62.5
Aqoxy7G03288 Aquilegia oxysepala HOM05D007019 ORTHO05D008398 3.4e-161 572.4 501 61.7
MBI14_g16432_MAGBIO Magnolia biondii HOM05D007019 ORTHO05D008398 7.7e-161 571.2 505 62.2
PGSC0003DMG400014784 Solanum tuberosum HOM05D007019 ORTHO05D008398 3.8e-160 568.9 500 63.6
Solyc08g068820.3 Solanum lycopersicum HOM05D007019 ORTHO05D008398 1.6e-158 563.5 502 61.2
EL10Ac2g02454 Beta vulgaris HOM05D007019 ORTHO05D008398 2.7e-158 562.8 551 58.6
Oeu021907.1 Olea europaea HOM05D007019 ORTHO05D008398 3.6e-158 562.4 501 62.9
PSO731G0070 Papaver somniferum HOM05D007019 ORTHO05D008398 1.1e-156 557.4 506 62.1
HanXRQChr03g0084841 Helianthus annuus HOM05D007019 ORTHO05D008398 9.7e-156 554.3 521 59.3
Hund25606 Selenicereus undatus HOM05D007019 ORTHO05D008398 1.3e-155 553.9 522 61.3
unitig_46.g18223 Utricularia gibba HOM05D007019 ORTHO05D008398 3.7e-155 552.4 494 60.7
ECA240G4302 Erigeron canadensis HOM05D007019 ORTHO05D008398 6.3e-155 551.6 515 61.0
PSO210G0129 Papaver somniferum HOM05D007019 ORTHO05D008398 5.3e-154 548.5 515 59.8
Cpa.g.sc148.46 Carica papaya HOM05D007019 ORTHO05D008398 3.4e-153 545.8 512 63.3
CAN.G273.24 Capsicum annuum HOM05D007019 ORTHO05D008398 7.7e-153 544.7 499 61.7
Sc23g0006120 Simmondsia chinensis HOM05D007019 ORTHO05D008398 1.3e-152 543.9 518 63.7
THA.LOC104819948 Tarenaya hassleriana HOM05D007019 ORTHO05D008398 1.7e-152 543.5 517 59.8
Aa31LG7G11570 Aethionema arabicum HOM05D007019 ORTHO05D008398 9.4e-151 537.7 508 60.8
ATR0580G102 Amborella trichopoda HOM05D007019 ORTHO05D008398 2.7e-150 536.2 510 57.5
FAN15G0718 Fragaria x ananassa HOM05D007019 ORTHO05D008398 2.7e-150 536.2 517 60.5
CDE04G0815 Ceratophyllum demersum HOM05D007019 ORTHO05D008398 1.4e-149 533.9 513 56.7
Sp4g03850 Schrenkiella parvula HOM05D007019 ORTHO05D008398 1.1e-148 530.8 514 58.9
CARHR294580 Cardamine hirsuta HOM05D007019 ORTHO05D008398 2.8e-147 526.2 515 58.6
Lsat_1_v5_gn_6_78060 Lactuca sativa HOM05D007019 ORTHO05D008398 1.3e-144 517.3 503 58.4
Thhalv10000137m.g Eutrema salsugineum HOM05D007019 ORTHO05D008398 2.9e-144 516.2 513 58.9
AUR62032443 Chenopodium quinoa HOM05D007019 ORTHO05D008398 8.5e-144 514.6 525 58.1
Carub.0004s0445 Capsella rubella HOM05D007019 ORTHO05D008398 1.1e-143 514.2 513 57.3
Zm00001eb257650 Zea mays HOM05D007019 ORTHO05D008398 1.9e-143 513.5 504 57.9
SGA_v2.0_scaffold169G38600 Striga asiatica HOM05D007019 ORTHO05D008398 5.5e-143 511.9 507 57.0
AT2G24830 Arabidopsis thaliana HOM05D007019 ORTHO05D008398 9.4e-143 511.1 514 57.0
AUR62024776 Chenopodium quinoa HOM05D007019 ORTHO05D008398 2.1e-142 510.0 547 56.3
Nitab4.5_0000406g0110 Nicotiana tabacum HOM05D007019 ORTHO05D008398 1.4e-141 507.3 500 58.8
BraA09t41004Z Brassica rapa HOM05D007019 ORTHO05D008398 2.3e-141 506.5 513 57.7
HPP92_010745 Vanilla planifolia HOM05D007019 ORTHO05D008398 3.3e-140 502.7 508 58.1
A09p56090 Brassica napus HOM05D007019 ORTHO05D008398 2.8e-139 499.6 512 57.2
A09p56030 Brassica napus HOM05D007019 ORTHO05D008398 6.3e-139 498.4 509 57.6
AL4G15870 Arabidopsis lyrata HOM05D007019 ORTHO05D008398 1.6e-134 483.8 510 56.5
C08p39020 Brassica napus HOM05D007019 ORTHO05D008398 1.0e-133 481.1 510 56.3
BolC8t51475H Brassica oleracea HOM05D007019 ORTHO05D008398 1.8e-133 480.3 510 56.1
Nitab4.5_0012106g0030 Nicotiana tabacum HOM05D007019 ORTHO05D008398 4.0e-133 479.2 500 56.6
Sopen08g022560 Solanum pennellii HOM05D007019 ORTHO05D008398 3.7e-131 472.6 405 63.2
TAR636G0280 Trochodendron aralioides HOM05D007019 ORTHO05D008398 9.5e-127 458.0 346 68.2
BcaC07g40903 Brassica carinata HOM05D007019 ORTHO05D008398 2.1e-126 456.8 500 55.0
vmacro11274 Vaccinium macrocarpon HOM05D007019 ORTHO05D008398 8.0e-126 454.9 496 55.2
SEGI_04420 Sequoiadendron giganteum HOM05D007019 ORTHO05D008398 2.9e-120 436.4 516 51.0
Dinv03401 Davidia involucrata HOM05D007019 ORTHO05D008398 8.6e-120 434.9 371 66.6
MD08G1051900 Malus domestica HOM05D007019 ORTHO05D008398 5.2e-117 425.6 360 68.1
Pp3c21_5730 Physcomitrium patens HOM05D007019 ORTHO05D008398 4.1e-106 389.4 516 45.3
Hma1.2p1_0737F.1_g210800 Hydrangea macrophylla HOM05D007019 ORTHO05D008398 7.0e-106 388.7 333 66.1
Mapoly0067s0020 Marchantia polymorpha HOM05D007019 ORTHO05D008398 7.3e-103 378.6 518 45.4
SMO116G0382 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 6.2e-94 349.0 504 44.0
SHI21092 Sapria himalayana HOM05D007019 ORTHO05D008398 4.6e-89 332.8 579 39.9
Dinv10229 Davidia involucrata HOM05D007019 ORTHO05D008398 2.2e-83 313.9 354 54.5
GSVIVG01036005001 Vitis vinifera HOM05D007019 ORTHO05D008398 2.2e-67 260.8 189 68.3
AagrBONN_evm.TU.Sc2ySwM_117.1463 Anthoceros agrestis HOM05D007019 ORTHO05D008398 4.5e-60 236.5 358 42.7
CBR_g30106 Chara braunii HOM05D007019 ORTHO05D008398 1.2e-52 211.8 561 32.3
SalBow6G1623 Salvia bowleyana HOM05D007019 ORTHO05D008398 9.4e-42 175.6 192 57.3
Peaxi162Scf01419g00115 Petunia axillaris HOM05D007019 ORTHO05D008398 6.9e-37 159.5 146 58.2
SMO116G0105 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.3e-30 138.7 325 35.4
Os02g0793000 Oryza sativa ssp. japonica HOM05D007019 ORTHO05D008398 1.3e-27 128.6 108 63.9
SMO269G0003 Selaginella moellendorffii HOM05D007019 ORTHO05D008398 1.2e-20 105.5 326 32.2
AagrBONN_evm.TU.Sc2ySwM_117.1462 Anthoceros agrestis HOM05D007019 ORTHO05D008398 1.6e-20 105.1 148 43.2
CSS0028433 Camellia sinensis var. sinensis HOM05D004574 ORTHO05D005612 1.3e-06 58.9 53 50.9
CANSAT11G2415 Cannabis sativa HOM05D004574 ORTHO05D005612 3.7e-06 57.4 65 44.6
Lsat_1_v5_gn_5_90461 Lactuca sativa HOM05D004574 ORTHO05D005612 3.7e-06 57.4 49 55.1
Oeu040778.1 Olea europaea HOM05D004574 ORTHO05D005612 4.9e-06 57.0 68 48.5
Glyma.17G104500 Glycine max HOM05D004574 ORTHO05D005612 6.3e-06 56.6 64 50.0
Lalb_Chr12g0198521 Lupinus albus HOM05D004574 ORTHO05D005612 6.3e-06 56.6 52 51.9
Cc06_g07390 Coffea canephora HOM05D004574 ORTHO05D005612 8.3e-06 56.2 52 50.0
Nn2g12259 Nelumbo nucifera HOM05D004574 ORTHO05D005612 8.3e-06 56.2 72 40.3
TAR636G2565 Trochodendron aralioides HOM05D007019 ORTHO05D008398 8.3e-06 56.2 43 67.4


User provided reference genes

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