Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G314600 Glycine max HOM05D005684 ORTHO05D007427 1.5e-141 506.1 251 100.0
Glyma.18G099600 Glycine max HOM05D005684 ORTHO05D007427 6.6e-137 490.7 251 96.8
VMungo0540G0423 Vigna mungo HOM05D005684 ORTHO05D007427 4.7e-135 484.6 251 95.2
Phvul.006G040700 Phaseolus vulgaris HOM05D005684 ORTHO05D007427 1.0e-134 483.4 251 95.2
arahy.Tifrunner.gnm1.ann1.A1QMDX Arachis hypogaea HOM05D005684 ORTHO05D007427 4.4e-133 478.0 251 93.6
arahy.Tifrunner.gnm1.ann1.G9AZJ3 Arachis hypogaea HOM05D005684 ORTHO05D007427 4.4e-133 478.0 251 93.6
Lj6g0016495 Lotus japonicus HOM05D005684 ORTHO05D007427 7.5e-133 477.2 251 92.8
Lalb_Chr06g0171921 Lupinus albus HOM05D005684 ORTHO05D007427 6.3e-132 474.2 251 93.2
TPR.G16583 Trifolium pratense HOM05D005684 ORTHO05D007427 2.0e-130 469.2 250 91.6
TWI38G0783 Tripterygium wilfordii HOM05D005684 ORTHO05D007427 7.8e-130 467.2 251 90.0
CANSAT21G0158 Cannabis sativa HOM05D005684 ORTHO05D007427 2.9e-129 465.3 249 89.6
Medtr3g051210 Medicago truncatula HOM05D005684 ORTHO05D007427 2.9e-129 465.3 250 90.8
Ca_14720_v3 Cicer arietinum L. HOM05D005684 ORTHO05D007427 3.9e-129 464.9 250 90.8
Manes.03G124800 Manihot esculenta HOM05D005684 ORTHO05D007427 1.5e-128 463.0 249 88.8
Potri.001G424600 Populus trichocarpa HOM05D005684 ORTHO05D007427 1.9e-128 462.6 249 89.6
ClCG10G005500 Citrullus lanatus HOM05D005684 ORTHO05D007427 3.3e-128 461.8 251 88.4
CsaV3_3G005220 Cucumis sativus L. HOM05D005684 ORTHO05D007427 9.5e-128 460.3 251 88.0
Sc16g0006290 Simmondsia chinensis HOM05D005684 ORTHO05D007427 1.2e-127 459.9 250 89.2
Actinidia35335 Actinidia chinensis HOM05D005684 ORTHO05D007427 4.7e-127 458.0 250 88.8
Cpa.g.sc97.28 Carica papaya HOM05D005684 ORTHO05D007427 4.7e-127 458.0 251 88.4
Lj1A870G92 Lonicera japonica HOM05D005684 ORTHO05D007427 4.7e-127 458.0 250 89.2
Actinidia10725 Actinidia chinensis HOM05D005684 ORTHO05D007427 6.1e-127 457.6 250 88.8
Dinv22273 Davidia involucrata HOM05D005684 ORTHO05D007427 6.1e-127 457.6 250 88.4
CiPaw.12G128600 Carya illinoinensis HOM05D005684 ORTHO05D007427 8.0e-127 457.2 246 90.2
Ciclev10009283m.g Citrus clementina HOM05D005684 ORTHO05D007427 8.0e-127 457.2 251 88.0
FvH4_3g22390 Fragaria vesca HOM05D005684 ORTHO05D007427 8.0e-127 457.2 251 87.6
FAN21G0196 Fragaria x ananassa HOM05D005684 ORTHO05D007427 2.3e-126 455.7 251 87.3
Manes.15G073300 Manihot esculenta HOM05D005684 ORTHO05D007427 2.3e-126 455.7 249 87.6
RcHm_v2.0_Chr5g0039061 Rosa chinensis HOM05D005684 ORTHO05D007427 4.0e-126 454.9 251 87.3
Sed0015085 Sechium edule HOM05D005684 ORTHO05D007427 6.8e-126 454.1 251 87.3
MD03G1205400 Malus domestica HOM05D005684 ORTHO05D007427 8.9e-126 453.8 251 87.6
Medtr7g033650 Medicago truncatula HOM05D005684 ORTHO05D007427 8.9e-126 453.8 250 89.2
Eucgr.F03458 Eucalyptus grandis HOM05D005684 ORTHO05D007427 3.4e-125 451.8 251 88.4
Cc05_g13580 Coffea canephora HOM05D005684 ORTHO05D007427 4.4e-125 451.4 250 88.0
Peaxi162Scf00387g00210 Petunia axillaris HOM05D005684 ORTHO05D007427 5.8e-125 451.1 250 86.0
MD11G1221300 Malus domestica HOM05D005684 ORTHO05D007427 7.5e-125 450.7 249 87.1
MSTRG.12968 Avicennia marina HOM05D005684 ORTHO05D007427 9.8e-125 450.3 250 86.8
Nitab4.5_0005048g0050 Nicotiana tabacum HOM05D005684 ORTHO05D007427 9.8e-125 450.3 250 85.6
FAN11G1729 Fragaria x ananassa HOM05D005684 ORTHO05D007427 1.3e-124 449.9 259 84.9
Gohir.D01G065700 Gossypium hirsutum HOM05D005684 ORTHO05D007427 1.3e-124 449.9 251 88.4
Gorai.002G087600 Gossypium raimondii HOM05D005684 ORTHO05D007427 1.3e-124 449.9 251 88.4
Aqoxy7G03212 Aquilegia oxysepala HOM05D005684 ORTHO05D007427 1.7e-124 449.5 250 87.2
PGR031G1629 Punica granatum HOM05D005684 ORTHO05D007427 2.2e-124 449.1 251 86.9
QL09p032912 Quercus lobata HOM05D005684 ORTHO05D007427 2.9e-124 448.7 246 89.0
Solyc10g006320.3 Solanum lycopersicum HOM05D005684 ORTHO05D007427 2.9e-124 448.7 250 85.2
Sopen10g002270 Solanum pennellii HOM05D005684 ORTHO05D007427 2.9e-124 448.7 250 85.6
Gohir.A01G078600 Gossypium hirsutum HOM05D005684 ORTHO05D007427 3.7e-124 448.4 251 88.0
Lsat_1_v5_gn_7_109480 Lactuca sativa HOM05D005684 ORTHO05D007427 3.7e-124 448.4 250 86.4
PGSC0003DMG400014423 Solanum tuberosum HOM05D005684 ORTHO05D007427 3.7e-124 448.4 250 85.2
QL08p011467 Quercus lobata HOM05D005684 ORTHO05D007427 4.9e-124 448.0 246 89.4
ECA236G3763 Erigeron canadensis HOM05D005684 ORTHO05D007427 8.3e-124 447.2 250 86.0
QL08p011589 Quercus lobata HOM05D005684 ORTHO05D007427 1.4e-123 446.4 246 89.0
GSVIVG01037615001 Vitis vinifera HOM05D005684 ORTHO05D007427 1.4e-123 446.4 249 88.0
THA.LOC104817661 Tarenaya hassleriana HOM05D005684 ORTHO05D007427 3.2e-123 445.3 251 84.1
TAR383G0098 Trochodendron aralioides HOM05D005684 ORTHO05D007427 3.2e-123 445.3 250 86.8
ATR0749G094 Amborella trichopoda HOM05D005684 ORTHO05D007427 4.1e-123 444.9 249 86.3
HanXRQChr11g0336331 Helianthus annuus HOM05D005684 ORTHO05D007427 7.0e-123 444.1 250 85.6
Migut.H01837 Erythranthe guttata HOM05D005684 ORTHO05D007427 2.7e-122 442.2 250 85.6
Duzib170G0103 Durio zibethinus HOM05D005684 ORTHO05D007427 1.0e-121 440.3 251 86.5
Thhalv10014489m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 1.0e-121 440.3 251 82.9
Carub.0007s1380 Capsella rubella HOM05D005684 ORTHO05D007427 6.6e-121 437.6 249 82.3
PSO170G3986 Papaver somniferum HOM05D005684 ORTHO05D007427 6.6e-121 437.6 245 87.3
COL.COLO4_09643 Corchorus olitorius HOM05D005684 ORTHO05D007427 1.9e-120 436.0 251 86.5
Nn8g40268 Nelumbo nucifera HOM05D005684 ORTHO05D007427 1.9e-120 436.0 250 83.6
vmacro09729 Vaccinium macrocarpon HOM05D005684 ORTHO05D007427 1.9e-120 436.0 267 81.6
MBI15_g26086_MAGBIO Magnolia biondii HOM05D005684 ORTHO05D007427 3.3e-120 435.3 247 86.2
AL7G25790 Arabidopsis lyrata HOM05D005684 ORTHO05D007427 4.3e-120 434.9 251 81.3
AT4G27040 Arabidopsis thaliana HOM05D005684 ORTHO05D007427 4.3e-120 434.9 251 81.3
PSO017G1132 Papaver somniferum HOM05D005684 ORTHO05D007427 4.3e-120 434.9 245 86.5
Sabra16G0288400 Salix brachista HOM05D005684 ORTHO05D007427 7.3e-120 434.1 296 75.3
CARHR234690 Cardamine hirsuta HOM05D005684 ORTHO05D007427 1.6e-119 433.0 251 81.3
Aa31LG3G10790 Aethionema arabicum HOM05D005684 ORTHO05D007427 6.2e-119 431.0 256 80.9
Cfa020373 Carpinus fangiana HOM05D005684 ORTHO05D007427 6.2e-119 431.0 230 89.1
BcaC06g32714 Brassica carinata HOM05D005684 ORTHO05D007427 1.8e-118 429.5 251 80.9
BolC7t46008H Brassica oleracea HOM05D005684 ORTHO05D007427 1.8e-118 429.5 251 80.9
SGA_v2.0_scaffold9G05066 Striga asiatica HOM05D005684 ORTHO05D007427 2.3e-118 429.1 269 80.7
A03p57030 Brassica napus HOM05D005684 ORTHO05D007427 3.1e-118 428.7 251 80.9
C07p55040 Brassica napus HOM05D005684 ORTHO05D007427 3.1e-118 428.7 251 80.9
BraA03t14772Z Brassica rapa HOM05D005684 ORTHO05D007427 5.2e-118 427.9 251 80.5
Thhalv10026070m.g Eutrema salsugineum HOM05D005684 ORTHO05D007427 5.2e-118 427.9 251 80.5
Sp7g25020 Schrenkiella parvula HOM05D005684 ORTHO05D007427 5.2e-118 427.9 251 80.9
A01p18200 Brassica napus HOM05D005684 ORTHO05D007427 1.2e-117 426.8 251 80.5
BraA01t01775Z Brassica rapa HOM05D005684 ORTHO05D007427 1.2e-117 426.8 251 80.5
RhsimUnG0251500 Rhododendron simsii HOM05D001404 ORTHO05D002309 7.5e-117 424.1 233 89.3
Haze_09656 Corylus avellana HOM05D005684 ORTHO05D007427 2.2e-116 422.5 246 85.0
BcaC09g50622 Brassica carinata HOM05D005684 ORTHO05D007427 2.9e-116 422.2 251 80.1
CAN.G1781.5 Capsicum annuum HOM05D005684 ORTHO05D007427 6.4e-116 421.0 233 85.4
Aa31LG5G10350 Aethionema arabicum HOM05D005684 ORTHO05D007427 8.3e-116 420.6 298 69.5
SEGI_16862 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 4.1e-115 418.3 251 79.7
Os09g0529700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 2.7e-114 415.6 250 80.8
Os11g0670700 Oryza sativa ssp. japonica HOM05D005684 ORTHO05D007427 3.9e-113 411.8 250 80.0
Nitab4.5_0001393g0150 Nicotiana tabacum HOM05D005684 ORTHO05D007427 8.6e-113 410.6 250 79.6
SMO232G0102 Selaginella moellendorffii HOM05D005684 ORTHO05D007427 5.8e-109 397.9 245 75.5
Oeu062595.4 Olea europaea HOM05D005684 ORTHO05D007427 1.3e-108 396.7 358 59.8
Hma1.2p1_0673F.1_g201210 Hydrangea macrophylla HOM05D005684 ORTHO05D007427 1.6e-106 389.8 255 77.6
CDE08G1370 Ceratophyllum demersum HOM05D005684 ORTHO05D007427 4.3e-104 381.7 243 76.5
BolC1t02253H Brassica oleracea HOM05D005684 ORTHO05D007427 3.6e-103 378.6 223 78.9
Mapoly0007s0150 Marchantia polymorpha HOM05D005684 ORTHO05D007427 1.1e-102 377.1 242 71.9
HPP92_001822 Vanilla planifolia HOM05D005684 ORTHO05D007427 4.4e-101 371.7 212 84.9
Prupe.4G210400 Prunus persica HOM05D005684 ORTHO05D007427 1.7e-100 369.8 251 74.5
Pp3c10_13560 Physcomitrium patens HOM05D005684 ORTHO05D007427 2.9e-100 369.0 241 74.7
AUR62020473 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.7e-97 359.8 250 71.6
BolC1t02251H Brassica oleracea HOM05D005684 ORTHO05D007427 7.3e-96 354.4 238 72.3
EL10Ac4g07848 Beta vulgaris HOM05D005684 ORTHO05D007427 1.8e-94 349.7 250 71.6
CBR_g28043 Chara braunii HOM05D005684 ORTHO05D007427 9.9e-93 344.0 245 68.2
Psat5g180640 Pisum sativum HOM05D005684 ORTHO05D007427 1.6e-90 336.7 181 89.5
FAN16G3416 Fragaria x ananassa HOM05D005684 ORTHO05D007427 4.6e-90 335.1 194 85.6
SEGI_13452 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 6.6e-89 331.3 206 79.1
AUR62015738 Chenopodium quinoa HOM05D005684 ORTHO05D007427 1.9e-83 313.2 324 54.0
Zm00001eb103240 Zea mays HOM05D005684 ORTHO05D007427 7.1e-83 311.2 187 82.4
Ah.06g186400 Amaranthus hybridus HOM05D005684 ORTHO05D007427 7.9e-74 281.2 208 68.3
Cre17.g706650 Chlamydomonas reinhardtii HOM05D005684 ORTHO05D007427 4.3e-72 275.4 245 53.5
MELO3C032233.2 Cucumis melo HOM05D005684 ORTHO05D007427 5.7e-72 275.0 151 87.4
C01p23200 Brassica napus HOM05D005684 ORTHO05D007427 2.8e-71 272.7 185 70.3
Duzib213G0140 Durio zibethinus HOM05D005684 ORTHO05D007427 8.4e-68 261.2 211 67.8
MCO16G427 Micromonas commoda HOM05D005684 ORTHO05D007427 1.9e-67 260.0 254 50.4
AagrBONN_evm.TU.Sc2ySwM_228.646 Anthoceros agrestis HOM05D005684 ORTHO05D007427 4.8e-63 245.4 152 76.3
CAN.G915.10 Capsicum annuum HOM05D005684 ORTHO05D007427 1.4e-62 243.8 197 63.5
Thecc.07G042900 Theobroma cacao HOM05D005684 ORTHO05D007427 2.5e-59 233.0 251 55.0
TAR626G1586 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.4e-54 216.5 120 88.3
GSVIVG01037619001 Vitis vinifera HOM05D005684 ORTHO05D007427 4.4e-48 195.7 112 83.9
MELO3C031910.2 Cucumis melo HOM05D005684 ORTHO05D007427 7.4e-48 194.9 101 91.1
TAR626G0395 Trochodendron aralioides HOM05D005684 ORTHO05D007427 2.2e-47 193.4 99 92.9
PRCOL_00005955 Prasinoderma coloniale HOM05D005684 ORTHO05D007427 2.6e-45 186.4 249 45.0
PGR142G1953 Punica granatum HOM05D005684 ORTHO05D007427 3.8e-44 182.6 101 84.2
Cfa026637 Carpinus fangiana HOM05D005684 ORTHO05D007427 4.4e-40 169.1 253 35.2
Prupe.5G052500 Prunus persica HOM05D005684 ORTHO05D007427 3.7e-39 166.0 100 81.0
Dinv40739 Davidia involucrata HOM05D005684 ORTHO05D007427 6.3e-39 165.2 158 62.0
C01p23160 Brassica napus HOM05D005684 ORTHO05D007427 1.1e-38 164.5 100 76.0
CAN.G1192.5 Capsicum annuum HOM05D005684 ORTHO05D000076 1.3e-28 131.0 98 70.4
SEGI_35638 Sequoiadendron giganteum HOM05D005684 ORTHO05D007427 3.6e-18 96.3 68 63.2
HanXRQChr09g0268041 Helianthus annuus HOM05D005684 ORTHO05D007427 8.0e-18 95.1 101 49.5
Actinidia05107 Actinidia chinensis HOM05D006458 ORTHO05D008433 1.4e-14 84.3 137 43.1
Hma1.2p1_0212F.1_g090110 Hydrangea macrophylla HOM05D005684 ORTHO05D048316 9.2e-14 81.6 44 79.5
AagrBONN_evm.TU.Sc2ySwM_340.2023 Anthoceros agrestis HOM05D005684 ORTHO05D007427 3.5e-13 79.7 55 70.9
SEGI_36060 Sequoiadendron giganteum HOM05D005684 ORTHO05D383802 3.9e-12 76.3 56 66.1
Zm00001eb057030 Zea mays HOM05D000424 ORTHO05D000355 6.8e-09 65.5 156 35.3
GSVIVG01037618001 Vitis vinifera HOM05D005684 ORTHO05D048316 1.5e-08 64.3 30 90.0


User provided reference genes

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