Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G314300 Glycine max HOM05D002401 ORTHO05D006143 3.3e-65 251.5 123 100.0
Glyma.18G099900 Glycine max HOM05D002401 ORTHO05D006143 5.7e-17 91.3 56 80.4
VMungo0540G1795 Vigna mungo HOM05D002401 ORTHO05D006143 4.1e-15 85.1 56 73.2
Glyma.04G034800 Glycine max HOM05D002401 ORTHO05D006143 3.4e-14 82.0 46 80.4
Phvul.006G040300 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 4.5e-14 81.6 56 69.6
Lalb_Chr02g0157531 Lupinus albus HOM05D002401 ORTHO05D006143 5.9e-14 81.3 47 80.9
Phvul.005G120000 Phaseolus vulgaris HOM05D002401 ORTHO05D006143 5.9e-14 81.3 56 69.6
arahy.Tifrunner.gnm1.ann1.A6BGRK Arachis hypogaea HOM05D002401 ORTHO05D006143 1.3e-13 80.1 54 66.7
arahy.Tifrunner.gnm1.ann1.JWFJ3V Arachis hypogaea HOM05D002401 ORTHO05D006143 1.3e-13 80.1 54 66.7
arahy.Tifrunner.gnm1.ann1.LC5CIX Arachis hypogaea HOM05D002401 ORTHO05D006143 1.3e-13 80.1 54 66.7
arahy.Tifrunner.gnm1.ann1.PMC9AK Arachis hypogaea HOM05D002401 ORTHO05D006143 1.3e-13 80.1 54 66.7
Ca_15531_v3 Cicer arietinum L. HOM05D002401 ORTHO05D006143 5.0e-13 78.2 57 66.7
Psat0s2724g0080 Pisum sativum HOM05D002401 ORTHO05D006143 1.2e-11 73.6 47 70.2
TPR.G21549 Trifolium pratense HOM05D002401 ORTHO05D006143 1.2e-11 73.6 47 70.2
Lj1g0004451 Lotus japonicus HOM05D002401 ORTHO05D006143 1.6e-11 73.2 46 76.1
TPR.G12442 Trifolium pratense HOM05D002401 ORTHO05D006143 1.6e-11 73.2 47 70.2
Medtr3g111580 Medicago truncatula HOM05D002401 ORTHO05D006143 2.1e-11 72.8 45 68.9
Psat5g144200 Pisum sativum HOM05D002401 ORTHO05D006143 2.1e-11 72.8 47 70.2
QL04p005176 Quercus lobata HOM05D002401 ORTHO05D006143 2.1e-11 72.8 48 72.9
TAR376G0282 Trochodendron aralioides HOM05D002401 ORTHO05D006143 2.7e-11 72.4 56 62.5
Nn7g38029 Nelumbo nucifera HOM05D002401 ORTHO05D006143 1.0e-10 70.5 48 66.7
QL02p010939 Quercus lobata HOM05D002401 ORTHO05D006143 1.8e-10 69.7 48 70.8
PGR031G0661 Punica granatum HOM05D002401 ORTHO05D006143 2.3e-10 69.3 55 63.6
Eucgr.H02545 Eucalyptus grandis HOM05D002401 ORTHO05D006143 3.9e-10 68.6 48 62.5
Atru.chr13.576 Acer truncatum HOM05D002401 ORTHO05D006143 5.1e-10 68.2 48 66.7
AT1G47578 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 5.1e-10 68.2 48 64.6
CAN.G371.115 Capsicum annuum HOM05D002401 ORTHO05D006143 5.1e-10 68.2 56 62.5
Cfa020647 Carpinus fangiana HOM05D002401 ORTHO05D006143 5.1e-10 68.2 48 68.8
TAR628G1629 Trochodendron aralioides HOM05D002401 ORTHO05D006143 5.1e-10 68.2 46 65.2
Carub.0001s3634 Capsella rubella HOM05D002401 ORTHO05D006143 6.7e-10 67.8 48 62.5
CiPaw.16G052500 Carya illinoinensis HOM05D002401 ORTHO05D006143 6.7e-10 67.8 48 68.8
AUR62021564 Chenopodium quinoa HOM05D002401 ORTHO05D006143 6.7e-10 67.8 55 58.2
Ciclev10002047m.g Citrus clementina HOM05D002401 ORTHO05D006143 8.8e-10 67.4 48 62.5
Duzib041G0147 Durio zibethinus HOM05D002401 ORTHO05D006143 8.8e-10 67.4 49 61.2
Hma1.2p1_0260F.1_g104390 Hydrangea macrophylla HOM05D002401 ORTHO05D006143 8.8e-10 67.4 48 66.7
Peaxi162Scf00280g00077 Petunia axillaris HOM05D002401 ORTHO05D006143 8.8e-10 67.4 56 58.9
PGSC0003DMG400016886 Solanum tuberosum HOM05D002401 ORTHO05D006143 8.8e-10 67.4 56 58.9
Oeu019097.1 Olea europaea HOM05D002401 ORTHO05D006143 1.1e-09 67.0 56 62.5
Hund09910 Selenicereus undatus HOM05D002401 ORTHO05D006143 1.1e-09 67.0 45 71.1
Sopen04g033330 Solanum pennellii HOM05D002401 ORTHO05D006143 1.1e-09 67.0 48 64.6
RcHm_v2.0_Chr5g0074221 Rosa chinensis HOM05D002401 ORTHO05D006143 1.5e-09 66.6 56 55.4
FAN15G1231 Fragaria x ananassa HOM05D002401 ORTHO05D006143 2.0e-09 66.2 56 57.1
CARHR037210 Cardamine hirsuta HOM05D002401 ORTHO05D006143 2.6e-09 65.9 48 60.4
Nitab4.5_0000110g0070 Nicotiana tabacum HOM05D002401 ORTHO05D006143 2.6e-09 65.9 48 64.6
Nitab4.5_0009288g0040 Nicotiana tabacum HOM05D002401 ORTHO05D006143 2.6e-09 65.9 48 64.6
Cc07_g16250 Coffea canephora HOM05D002401 ORTHO05D006143 3.3e-09 65.5 52 57.7
COL.COLO4_26393 Corchorus olitorius HOM05D002401 ORTHO05D006143 3.3e-09 65.5 49 57.1
RcHm_v2.0_Chr6g0294461 Rosa chinensis HOM05D002401 ORTHO05D006143 3.3e-09 65.5 54 57.4
Thecc.08G019900 Theobroma cacao HOM05D002401 ORTHO05D006143 3.3e-09 65.5 54 57.4
Aa31LG2G19270 Aethionema arabicum HOM05D002401 ORTHO05D006143 4.4e-09 65.1 49 63.3
AUR62036501 Chenopodium quinoa HOM05D002857 ORTHO05D007919 4.4e-09 65.1 49 63.3
Thhalv10025943m.g Eutrema salsugineum HOM05D002401 ORTHO05D006143 4.4e-09 65.1 48 60.4
Sed0016228 Sechium edule HOM05D002401 ORTHO05D006143 4.4e-09 65.1 48 66.7
AT4G31050 Arabidopsis thaliana HOM05D002401 ORTHO05D006143 5.7e-09 64.7 48 60.4
AL7G21020 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 7.4e-09 64.3 48 60.4
CARHR238960 Cardamine hirsuta HOM05D002401 ORTHO05D006143 7.4e-09 64.3 56 55.4
FvH4_2g26090 Fragaria vesca HOM05D002401 ORTHO05D006143 7.4e-09 64.3 54 55.6
FAN20G2779 Fragaria x ananassa HOM05D002401 ORTHO05D006143 7.4e-09 64.3 56 55.4
FAN24G0239 Fragaria x ananassa HOM05D002401 ORTHO05D006143 7.4e-09 64.3 54 55.6
MD06G1010800 Malus domestica HOM05D002401 ORTHO05D006143 7.4e-09 64.3 56 58.9
GSVIVG01011051001 Vitis vinifera HOM05D002401 ORTHO05D006143 7.4e-09 64.3 46 60.9
CANSAT56G2411 Cannabis sativa HOM05D002401 ORTHO05D006143 9.7e-09 63.9 56 55.4
CDE09G0871 Ceratophyllum demersum HOM05D002401 ORTHO05D006143 9.7e-09 63.9 46 60.9
AUR62008526 Chenopodium quinoa HOM05D002401 ORTHO05D006143 9.7e-09 63.9 47 66.0
FAN27G1995 Fragaria x ananassa HOM05D002401 ORTHO05D006143 9.7e-09 63.9 56 55.4
Prupe.5G012900 Prunus persica HOM05D002401 ORTHO05D006143 9.7e-09 63.9 48 60.4
CsaV3_5G035090 Cucumis sativus L. HOM05D002401 ORTHO05D006143 1.3e-08 63.5 46 65.2
Gohir.A05G197900 Gossypium hirsutum HOM05D002401 ORTHO05D006143 1.3e-08 63.5 49 55.1
Gohir.D05G200800 Gossypium hirsutum HOM05D002401 ORTHO05D006143 1.3e-08 63.5 49 55.1
Gorai.009G206100 Gossypium raimondii HOM05D002401 ORTHO05D006143 1.3e-08 63.5 49 55.1
AL1G53870 Arabidopsis lyrata HOM05D002401 ORTHO05D006143 1.7e-08 63.2 48 58.3
BcaC09g51892 Brassica carinata HOM05D002401 ORTHO05D006143 1.7e-08 63.2 48 60.4
C01p07880 Brassica napus HOM05D002401 ORTHO05D006143 1.7e-08 63.2 48 60.4
BolC1t00775H Brassica oleracea HOM05D002401 ORTHO05D006143 1.7e-08 63.2 48 60.4
MELO3C012322.2 Cucumis melo HOM05D002401 ORTHO05D006143 1.7e-08 63.2 48 62.5
Dinv29831 Davidia involucrata HOM05D002401 ORTHO05D006143 1.7e-08 63.2 56 58.9
Dinv29837 Davidia involucrata HOM05D002401 ORTHO05D006143 1.7e-08 63.2 48 64.6
Carub.0007s0947 Capsella rubella HOM05D002401 ORTHO05D006143 2.2e-08 62.8 46 58.7
CiPaw.06G110100 Carya illinoinensis HOM05D002401 ORTHO05D006143 2.2e-08 62.8 48 62.5
ClCG05G022050 Citrullus lanatus HOM05D002667 ORTHO05D006143 2.2e-08 62.8 48 62.5
HanXRQChr09g0268371 Helianthus annuus HOM05D002401 ORTHO05D006143 2.2e-08 62.8 58 55.2
Sp1g34610 Schrenkiella parvula HOM05D002401 ORTHO05D006143 2.2e-08 62.8 48 60.4
Aqoxy6G00960 Aquilegia oxysepala HOM05D002401 ORTHO05D006143 2.8e-08 62.4 48 58.3
Migut.N02680 Erythranthe guttata HOM05D002401 ORTHO05D006143 2.8e-08 62.4 48 64.6
MBI16_g31342_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 2.8e-08 62.4 46 63.0
MBI16_g45778_MAGBIO Magnolia biondii HOM05D002401 ORTHO05D006143 2.8e-08 62.4 46 63.0
A01p07120 Brassica napus HOM05D002401 ORTHO05D006143 4.8e-08 61.6 48 58.3
BcaNung03418 Brassica carinata HOM05D002401 ORTHO05D006143 6.3e-08 61.2 48 56.2
A08p18900 Brassica napus HOM05D002401 ORTHO05D006143 6.3e-08 61.2 48 56.2
AUR62031756 Chenopodium quinoa HOM05D002401 ORTHO05D006143 6.3e-08 61.2 48 60.4
Sp7g28930 Schrenkiella parvula HOM05D002401 ORTHO05D006143 6.3e-08 61.2 48 58.3
EL10Ac5g11128 Beta vulgaris HOM05D002401 ORTHO05D006143 8.2e-08 60.8 57 56.1
BcaB03g12674 Brassica carinata HOM05D002401 ORTHO05D006143 8.2e-08 60.8 48 54.2
CSS0037792 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 8.2e-08 60.8 46 63.0
CSS0045600 Camellia sinensis var. sinensis HOM05D002401 ORTHO05D006143 8.2e-08 60.8 46 63.0
Sabra02G0103000 Salix brachista HOM05D002401 ORTHO05D006143 8.2e-08 60.8 46 63.0
PSO700G0184 Papaver somniferum HOM05D002401 ORTHO05D006143 1.1e-07 60.5 48 60.4
Rhsim06G0039300 Rhododendron simsii HOM05D002401 ORTHO05D006143 1.1e-07 60.5 48 58.3
Ah.11g047790 Amaranthus hybridus HOM05D000501 ORTHO05D006143 1.4e-07 60.1 47 61.7
BraA01t00664Z Brassica rapa HOM05D002401 ORTHO05D006143 1.4e-07 60.1 46 60.9
PSO170G5894 Papaver somniferum HOM05D002401 ORTHO05D006143 1.4e-07 60.1 48 60.4
Potri.002G131000 Populus trichocarpa HOM05D002401 ORTHO05D006143 1.4e-07 60.1 48 60.4
THA.LOC104803396 Tarenaya hassleriana HOM05D002401 ORTHO05D006143 1.4e-07 60.1 46 58.7
TPR.G10101 Trifolium pratense HOM05D002401 ORTHO05D006143 1.4e-07 60.1 42 64.3
TWI56G0576 Tripterygium wilfordii HOM05D002401 ORTHO05D006143 1.4e-07 60.1 48 58.3
Sc02g0006690 Simmondsia chinensis HOM05D002401 ORTHO05D006143 1.8e-07 59.7 53 56.6
Zm00001eb030760 Zea mays HOM05D002401 ORTHO05D006143 1.8e-07 59.7 48 60.4
HanXRQChr05g0141551 Helianthus annuus HOM05D002401 ORTHO05D006143 3.1e-07 58.9 48 56.2
Rhsim08G0075100 Rhododendron simsii HOM05D002401 ORTHO05D006143 3.1e-07 58.9 56 51.8
SEGI_06323 Sequoiadendron giganteum HOM05D002401 ORTHO05D006143 3.1e-07 58.9 46 52.2
SGA_v2.0_scaffold14G07044 Striga asiatica HOM05D002401 ORTHO05D006143 3.1e-07 58.9 48 58.3
Pp3c12_18570 Physcomitrium patens HOM05D002401 ORTHO05D006143 4.1e-07 58.5 46 63.0
vmacro21595 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 4.1e-07 58.5 55 52.7
Manes.05G166100 Manihot esculenta HOM05D002401 ORTHO05D006143 5.3e-07 58.2 46 58.7
Lsat_1_v5_gn_4_122901 Lactuca sativa HOM05D002401 ORTHO05D006143 7.0e-07 57.8 48 58.3
Lj1A1064T34 Lonicera japonica HOM05D002401 ORTHO05D006143 9.1e-07 57.4 49 55.1
Oeu015608.1 Olea europaea HOM05D002401 ORTHO05D006143 9.1e-07 57.4 57 49.1
DCAR_019427 Daucus carota HOM05D002401 ORTHO05D006143 1.5e-06 56.6 44 54.5
ECA232G3633 Erigeron canadensis HOM05D002401 ORTHO05D006143 2.6e-06 55.8 46 54.3
DCAR_019493 Daucus carota HOM05D002401 ORTHO05D006143 3.4e-06 55.5 44 54.5
Os12g0596000 Oryza sativa ssp. japonica HOM05D002401 ORTHO05D006143 4.5e-06 55.1 48 54.2
vmacro12719 Vaccinium macrocarpon HOM05D002401 ORTHO05D006143 4.5e-06 55.1 48 52.1
MSTRG.24312 Avicennia marina HOM05D002401 ORTHO05D006143 5.9e-06 54.7 46 56.5


User provided reference genes

Program Settings