Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G308100 Glycine max HOM05D001899 ORTHO05D001858 1.1e-104 383.3 192 100.0
Glyma.18G109500 Glycine max HOM05D001899 ORTHO05D001858 3.0e-73 278.9 176 81.8
Glyma.08G303500 Glycine max HOM05D001899 ORTHO05D001858 5.3e-46 188.3 179 59.2
Glyma.08G305600 Glycine max HOM05D001899 ORTHO05D001858 1.2e-45 187.2 181 59.1
Glyma.02G030500 Glycine max HOM05D001899 ORTHO05D001858 1.3e-44 183.7 166 62.0
Glyma.08G306701 Glycine max HOM05D001899 ORTHO05D001858 1.9e-43 179.9 177 58.2
Glyma.08G286900 Glycine max HOM05D001899 ORTHO05D001858 2.1e-42 176.4 183 57.9
Glyma.18G111400 Glycine max HOM05D001899 ORTHO05D001858 2.2e-36 156.4 147 59.2
Lj6g0003184 Lotus japonicus HOM05D001899 ORTHO05D001858 1.8e-33 146.7 176 50.6
Phvul.008G069566 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 1.8e-33 146.7 189 49.2
VMungo0540G1898 Vigna mungo HOM05D001899 ORTHO05D001858 4.0e-33 145.6 179 49.2
Phvul.006G038700 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 1.1e-30 137.5 147 53.1
Phvul.006G039000 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 1.4e-30 137.1 151 53.0
Phvul.006G041200 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 7.0e-30 134.8 167 49.7
Phvul.008G066700 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 2.2e-28 129.8 173 45.1
Phvul.008G067100 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 6.1e-26 121.7 174 43.7
Phvul.008G067000 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 1.8e-25 120.2 175 42.9
Eucgr.J01170 Eucalyptus grandis HOM05D001899 ORTHO05D001858 5.2e-25 118.6 174 44.3
Phvul.006G040900 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 1.5e-24 117.1 141 46.8
Phvul.008G067200 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 4.4e-24 115.5 178 43.8
CSS0003631 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 5.7e-24 115.2 182 40.1
FAN05G3634 Fragaria x ananassa HOM05D001899 ORTHO05D001858 6.3e-23 111.7 172 39.0
Phvul.002G074500 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 2.4e-22 109.8 123 48.8
FAN18G0045 Fragaria x ananassa HOM05D001899 ORTHO05D001858 1.6e-21 107.1 163 41.7
Eucgr.J01171 Eucalyptus grandis HOM05D001899 ORTHO05D001858 2.7e-21 106.3 171 42.7
Cc03_g14570 Coffea canephora HOM05D001899 ORTHO05D001858 4.5e-21 105.5 172 39.5
FAN09G0419 Fragaria x ananassa HOM05D001899 ORTHO05D001858 4.5e-21 105.5 162 40.7
RcHm_v2.0_Chr2g0151861 Rosa chinensis HOM05D001899 ORTHO05D001858 4.5e-21 105.5 172 37.2
CSS0033208 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 7.7e-21 104.8 230 33.0
Eucgr.J01169 Eucalyptus grandis HOM05D001899 ORTHO05D001858 1.3e-20 104.0 171 42.1
RcHm_v2.0_Chr2g0152221 Rosa chinensis HOM05D001899 ORTHO05D001858 2.9e-20 102.8 168 36.9
Aqoxy1G04207 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 5.0e-20 102.1 187 35.8
FvH4_6g29201 Fragaria vesca HOM05D001899 ORTHO05D001858 5.0e-20 102.1 180 40.0
FAN14G4804 Fragaria x ananassa HOM05D001899 ORTHO05D001858 5.0e-20 102.1 180 40.0
Cc03_g14670 Coffea canephora HOM05D001899 ORTHO05D001858 6.6e-20 101.7 167 42.5
CSS0008889 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 8.6e-20 101.3 205 34.6
Dinv13836 Davidia involucrata HOM05D001899 ORTHO05D001858 2.5e-19 99.8 214 33.2
FAN05G3399 Fragaria x ananassa HOM05D001899 ORTHO05D001858 2.5e-19 99.8 180 37.8
Potri.019G036900 Populus trichocarpa HOM05D001899 ORTHO05D001858 9.5e-19 97.8 175 36.0
Aqoxy1G02156 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 2.1e-18 96.7 186 36.0
Phvul.008G066600 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 2.8e-18 96.3 142 45.1
Prupe.3G176100 Prunus persica HOM05D001899 ORTHO05D001858 2.8e-18 96.3 165 35.2
Os01g0799000 Oryza sativa ssp. japonica HOM05D001899 ORTHO05D001858 4.7e-18 95.5 185 35.7
RcHm_v2.0_Chr2g0112821 Rosa chinensis HOM05D001899 ORTHO05D001858 6.1e-18 95.1 142 40.8
Dinv15506 Davidia involucrata HOM05D001899 ORTHO05D001858 8.0e-18 94.7 182 34.6
Aqoxy4G00976 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 2.3e-17 93.2 205 34.1
Phvul.008G066800 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 4.0e-17 92.4 116 45.7
Sabra19G0048300 Salix brachista HOM05D001899 ORTHO05D001858 4.0e-17 92.4 180 36.7
Sabra19G0048600 Salix brachista HOM05D001899 ORTHO05D001858 6.8e-17 91.7 182 35.7
Actinidia05558 Actinidia chinensis HOM05D001899 ORTHO05D001858 7.5e-16 88.2 184 32.6
Hma1.2p1_0565F.1_g179700 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 4.9e-15 85.5 217 32.3
Actinidia27155 Actinidia chinensis HOM05D001899 ORTHO05D001858 6.3e-15 85.1 199 35.2
Actinidia25743 Actinidia chinensis HOM05D001899 ORTHO05D001858 8.3e-15 84.7 201 32.3
Aqoxy1G04132 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 8.3e-15 84.7 212 30.7
Prupe.4G034300 Prunus persica HOM05D001899 ORTHO05D001858 1.1e-14 84.3 204 31.4
Nn1g03842 Nelumbo nucifera HOM05D001899 ORTHO05D001858 1.8e-14 83.6 186 33.3
Cc00_g11790 Coffea canephora HOM05D001899 ORTHO05D001858 2.4e-14 83.2 202 32.7
SalBow8G4329 Salvia bowleyana HOM05D001899 ORTHO05D001858 2.7e-13 79.7 201 33.3
CSS0023008 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 3.5e-13 79.3 202 32.2
Aqoxy4G00975 Aquilegia oxysepala HOM05D001899 ORTHO05D001858 4.5e-13 79.0 164 36.0
CSS0021841 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 4.5e-13 79.0 197 32.0
AL8G13160 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 7.8e-13 78.2 201 33.8
Migut.B01261 Erythranthe guttata HOM05D001899 ORTHO05D001858 7.8e-13 78.2 170 35.9
MBI15_g06360_MAGBIO Magnolia biondii HOM05D001899 ORTHO05D001858 1.0e-12 77.8 160 37.5
QL03p012061 Quercus lobata HOM05D001899 ORTHO05D001858 1.3e-12 77.4 200 33.5
Lj2P372T15 Lonicera japonica HOM05D001899 ORTHO05D001858 2.3e-12 76.6 173 35.3
Nn7g37685 Nelumbo nucifera HOM05D001899 ORTHO05D001858 2.3e-12 76.6 168 35.7
Phvul.006G032500 Phaseolus vulgaris HOM05D001899 ORTHO05D001858 2.3e-12 76.6 91 50.5
Atru.chr2.1041 Acer truncatum HOM05D001899 ORTHO05D001858 2.9e-12 76.3 182 31.9
Hma1.2p1_0565F.1_g179690 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 2.9e-12 76.3 182 34.6
CSS0033155 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 3.8e-12 75.9 199 32.7
GSVIVG01015664001 Vitis vinifera HOM05D001899 ORTHO05D001858 3.8e-12 75.9 182 35.2
Dinv43420 Davidia involucrata HOM05D001899 ORTHO05D001858 5.0e-12 75.5 130 38.5
CSS0033122 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 1.5e-11 73.9 210 30.5
Ah.01g001710 Amaranthus hybridus HOM05D000011 ORTHO05D005888 3.3e-11 72.8 171 31.6
Lj1P1215T40 Lonicera japonica HOM05D001899 ORTHO05D001858 4.3e-11 72.4 178 32.0
MBI18_g26034_MAGBIO Magnolia biondii HOM05D001899 ORTHO05D001858 4.3e-11 72.4 180 31.7
MD10G1305300 Malus domestica HOM05D001899 ORTHO05D001858 4.3e-11 72.4 203 31.0
CANSAT21G1287 Cannabis sativa HOM05D001899 ORTHO05D001858 7.3e-11 71.6 190 31.6
MBI18_g24123_MAGBIO Magnolia biondii HOM05D001899 ORTHO05D001858 7.3e-11 71.6 180 31.1
Os11g0640000 Oryza sativa ssp. japonica HOM05D001899 ORTHO05D001858 7.3e-11 71.6 191 30.9
CiPaw.11G083200 Carya illinoinensis HOM05D001899 ORTHO05D001858 9.5e-11 71.2 177 32.8
Os01g0953400 Oryza sativa ssp. japonica HOM05D001899 ORTHO05D001858 9.5e-11 71.2 206 30.1
CSS0049749 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 1.2e-10 70.9 188 33.5
Sed0008373 Sechium edule HOM05D001899 ORTHO05D001858 1.6e-10 70.5 168 30.4
Sp5g11250 Schrenkiella parvula HOM05D000011 ORTHO05D005888 2.1e-10 70.1 172 32.6
MBI15_g06353_MAGBIO Magnolia biondii HOM05D001899 ORTHO05D001858 2.8e-10 69.7 201 30.8
RcHm_v2.0_Chr2g0111461 Rosa chinensis HOM05D001899 ORTHO05D001858 3.6e-10 69.3 124 37.9
GSVIVG01015778001 Vitis vinifera HOM05D001899 ORTHO05D001858 3.6e-10 69.3 169 30.8
A09p44070 Brassica napus HOM05D000126 ORTHO05D005888 4.7e-10 68.9 172 33.1
BraA09t39865Z Brassica rapa HOM05D000126 ORTHO05D005888 4.7e-10 68.9 172 33.1
QL05p080750 Quercus lobata HOM05D001899 ORTHO05D001858 6.1e-10 68.6 211 29.9
Cfa000321 Carpinus fangiana HOM05D001899 ORTHO05D001858 8.0e-10 68.2 203 29.6
Eucgr.D02106 Eucalyptus grandis HOM05D001899 ORTHO05D001858 1.0e-09 67.8 210 27.1
SGA_v2.0_scaffold7G03908 Striga asiatica HOM05D001899 ORTHO05D001858 1.0e-09 67.8 193 31.1
C08p26210 Brassica napus HOM05D000126 ORTHO05D005888 1.4e-09 67.4 172 32.6
BolC8t50239H Brassica oleracea HOM05D000126 ORTHO05D005888 1.4e-09 67.4 172 32.6
Os02g0549900 Oryza sativa ssp. japonica HOM05D001899 ORTHO05D001858 1.4e-09 67.4 195 28.7
QL10p057408 Quercus lobata HOM05D001899 ORTHO05D001858 1.4e-09 67.4 211 31.3
QL10p057742 Quercus lobata HOM05D001899 ORTHO05D001858 1.4e-09 67.4 204 29.9
RcHm_v2.0_Chr5g0001221 Rosa chinensis HOM05D000011 ORTHO05D005888 1.4e-09 67.4 183 29.0
MBI18_g44131_MAGBIO Magnolia biondii HOM05D001899 ORTHO05D001858 1.8e-09 67.0 181 29.8
AL5G31350 Arabidopsis lyrata HOM05D000011 ORTHO05D005888 2.3e-09 66.6 172 33.1
MSTRG.15943 Avicennia marina HOM05D001899 ORTHO05D001858 2.3e-09 66.6 219 29.7
QL05p080564 Quercus lobata HOM05D001899 ORTHO05D001858 2.3e-09 66.6 210 27.1
CARHR160530 Cardamine hirsuta HOM05D000011 ORTHO05D005888 3.1e-09 66.2 173 30.6
Cfa021992 Carpinus fangiana HOM05D001899 ORTHO05D001858 3.1e-09 66.2 193 29.5
CARHR176530 Cardamine hirsuta HOM05D001899 ORTHO05D001858 4.0e-09 65.9 207 27.1
Thhalv10010117m.g Eutrema salsugineum HOM05D000011 ORTHO05D005888 4.0e-09 65.9 173 31.8
Hma1.2p1_0005F.1_g004450 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 4.0e-09 65.9 233 26.6
Aa31LG4G19080 Aethionema arabicum HOM05D000011 ORTHO05D005888 5.2e-09 65.5 172 32.0
COL.COLO4_16866 Corchorus olitorius HOM05D001899 ORTHO05D001858 5.2e-09 65.5 208 29.3
RcHm_v2.0_Chr3g0479511 Rosa chinensis HOM05D001899 ORTHO05D001858 5.2e-09 65.5 220 28.6
QL05p080645 Quercus lobata HOM05D001899 ORTHO05D001858 6.8e-09 65.1 186 28.5
Actinidia25742 Actinidia chinensis HOM05D001899 ORTHO05D001858 8.9e-09 64.7 193 28.5
BcaB01g00559 Brassica carinata HOM05D000011 ORTHO05D005888 1.2e-08 64.3 134 36.6
Duzib084G0236 Durio zibethinus HOM05D001899 ORTHO05D001858 1.2e-08 64.3 166 30.7
AT3G50950 Arabidopsis thaliana HOM05D000011 ORTHO05D005888 1.5e-08 63.9 171 31.6
GSVIVG01015668001 Vitis vinifera HOM05D001899 ORTHO05D001858 1.5e-08 63.9 174 32.2
RcHm_v2.0_Chr4g0391681 Rosa chinensis HOM05D000011 ORTHO05D005888 2.0e-08 63.5 183 28.4
RcHm_v2.0_Chr4g0391451 Rosa chinensis HOM05D000011 ORTHO05D005888 2.6e-08 63.2 183 27.9
FAN14G0941 Fragaria x ananassa HOM05D001899 ORTHO05D001858 4.4e-08 62.4 205 28.3
MD09G1222600 Malus domestica HOM05D001899 ORTHO05D001858 5.8e-08 62.0 118 37.3
Sopen02g029560 Solanum pennellii HOM05D000011 ORTHO05D005888 5.8e-08 62.0 172 30.2
Hma1.2p1_3608F.1_g337030 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 7.5e-08 61.6 68 44.1
MBI18_g03660_MAGBIO Magnolia biondii HOM05D001899 ORTHO05D001858 7.5e-08 61.6 147 36.1
FAN05G3856 Fragaria x ananassa HOM05D001899 ORTHO05D001858 9.8e-08 61.2 214 29.0
CSS0040111 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 1.3e-07 60.8 195 31.8
FvH4_6g22160 Fragaria vesca HOM05D001899 ORTHO05D001858 1.3e-07 60.8 214 28.5
BcaC07g39565 Brassica carinata HOM05D000126 ORTHO05D005888 2.2e-07 60.1 170 31.2
vmacro03836 Vaccinium macrocarpon HOM05D001899 ORTHO05D001858 2.2e-07 60.1 215 27.0
Os01g0947700 Oryza sativa ssp. japonica HOM05D000020 ORTHO05D000282 2.9e-07 59.7 167 33.5
ClCG01G004370 Citrullus lanatus HOM05D001899 ORTHO05D001858 3.7e-07 59.3 194 30.9
COL.COLO4_37093 Corchorus olitorius HOM05D001899 ORTHO05D001858 3.7e-07 59.3 213 25.4
FAN09G1114 Fragaria x ananassa HOM05D001899 ORTHO05D001858 3.7e-07 59.3 214 28.5
Manes.02G097400 Manihot esculenta HOM05D000011 ORTHO05D005888 3.7e-07 59.3 176 29.5
Potri.006G014400 Populus trichocarpa HOM05D000011 ORTHO05D005888 4.9e-07 58.9 189 29.1
CSS0012574 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 6.4e-07 58.5 208 27.9
CANSAT56G3575 Cannabis sativa HOM05D001899 ORTHO05D001858 6.4e-07 58.5 196 26.5
Actinidia29411 Actinidia chinensis HOM05D001899 ORTHO05D001858 1.1e-06 57.8 144 31.2
AT5G45520 Arabidopsis thaliana HOM05D001899 ORTHO05D001858 1.1e-06 57.8 92 42.4
DCAR_021587 Daucus carota HOM05D001899 ORTHO05D001858 1.1e-06 57.8 144 27.1
MD12G1056400 Malus domestica HOM05D001899 ORTHO05D001858 1.1e-06 57.8 198 28.8
TWI32G1137 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 1.1e-06 57.8 78 41.0
TWI60G1023 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 1.1e-06 57.8 74 43.2
Carub.0005s1735 Capsella rubella HOM05D000011 ORTHO05D005888 1.4e-06 57.4 171 29.8
QL12p010054 Quercus lobata HOM05D001899 ORTHO05D001858 1.4e-06 57.4 190 28.9
BcaC07g39568 Brassica carinata HOM05D001899 ORTHO05D005888 1.9e-06 57.0 152 31.6
PGR044G0582 Punica granatum HOM05D001899 ORTHO05D001858 1.9e-06 57.0 90 41.1
COL.COLO4_16910 Corchorus olitorius HOM05D001899 ORTHO05D001858 2.4e-06 56.6 260 25.8
AL8G13350 Arabidopsis lyrata HOM05D001899 ORTHO05D001858 3.2e-06 56.2 217 27.6
GSVIVG01018889001 Vitis vinifera HOM05D002044 ORTHO05D005000 3.2e-06 56.2 166 28.9
Cpa.g.sc74.94 Carica papaya HOM05D001899 ORTHO05D001858 5.4e-06 55.5 96 38.5
Lsat_1_v5_gn_1_124180 Lactuca sativa HOM05D001899 ORTHO05D001858 5.4e-06 55.5 210 26.7
THA.LOC104819196 Tarenaya hassleriana HOM05D000011 ORTHO05D005888 5.4e-06 55.5 174 30.5
Aa31LG9G7500 Aethionema arabicum HOM05D001899 ORTHO05D001858 7.0e-06 55.1 87 40.2


User provided reference genes

Program Settings