Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G295300 Glycine max HOM05D000665 ORTHO05D000140 3.8e-37 157.5 73 100.0
Glyma.11G158600 Glycine max HOM05D000665 ORTHO05D000140 4.8e-32 140.6 71 91.5
Glyma.08G025200 Glycine max HOM05D000665 ORTHO05D000140 1.8e-31 138.7 71 91.5
Glyma.09G072900 Glycine max HOM05D000665 ORTHO05D000140 1.8e-31 138.7 71 91.5
Glyma.20G028300 Glycine max HOM05D000665 ORTHO05D000140 1.2e-30 136.0 71 88.7
Glyma.11G208100 Glycine max HOM05D000665 ORTHO05D000140 2.7e-30 134.8 71 88.7
Glyma.04G130400 Glycine max HOM05D000665 ORTHO05D000140 4.5e-30 134.0 71 87.3
Glyma.09G131700 Glycine max HOM05D000665 ORTHO05D000140 4.5e-30 134.0 71 88.7
Glyma.17G193900 Glycine max HOM05D000665 ORTHO05D000140 2.7e-27 124.8 71 83.1
Glyma.06G254400 Glycine max HOM05D000665 ORTHO05D000140 8.0e-27 123.2 71 80.3
Lj1g0005320 Lotus japonicus HOM05D000665 ORTHO05D000140 2.7e-22 108.2 71 66.2
Lj2g0022922 Lotus japonicus HOM05D000665 ORTHO05D000140 2.7e-22 108.2 71 66.2
Lj5g0014380 Lotus japonicus HOM05D000665 ORTHO05D000140 3.5e-22 107.8 71 66.2
Glyma.05G097200 Glycine max HOM05D000665 ORTHO05D000140 5.9e-22 107.1 71 70.4
Lj1g0011582 Lotus japonicus HOM05D000665 ORTHO05D000140 5.9e-22 107.1 71 66.2
Lj6g0001109 Lotus japonicus HOM05D000665 ORTHO05D000140 5.9e-22 107.1 71 66.2
COL.COLO4_07541 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.0e-21 106.3 71 64.8
COL.COLO4_11921 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.0e-21 106.3 71 64.8
COL.COLO4_35899 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.0e-21 106.3 71 64.8
Glyma.02G156600 Glycine max HOM05D000665 ORTHO05D000140 1.0e-21 106.3 71 70.4
Glyma.05G132400 Glycine max HOM05D000665 ORTHO05D000140 1.0e-21 106.3 71 70.4
Glyma.08G287150 Glycine max HOM05D000665 ORTHO05D000140 1.0e-21 106.3 71 70.4
Glyma.19G070100 Glycine max HOM05D000665 ORTHO05D000140 2.9e-21 104.8 71 69.0
Glyma.16G081300 Glycine max HOM05D000665 ORTHO05D000140 8.6e-21 103.2 71 67.6
Glyma.08G267100 Glycine max HOM05D000665 ORTHO05D000140 1.9e-20 102.1 71 67.6
Medtr7g061400 Medicago truncatula HOM05D000665 ORTHO05D000140 3.3e-20 101.3 71 64.8
TPR.G40119 Trifolium pratense HOM05D000665 ORTHO05D000140 4.2e-20 100.9 71 64.8
Glyma.18G141600 Glycine max HOM05D000665 ORTHO05D000140 5.5e-20 100.5 71 67.6
Glyma.03G069900 Glycine max HOM05D000665 ORTHO05D000140 7.2e-20 100.1 71 66.2
COL.COLO4_13013 Corchorus olitorius HOM05D000665 ORTHO05D000140 4.7e-19 97.4 71 60.6
RcHm_v2.0_Chr1g0330381 Rosa chinensis HOM05D000665 ORTHO05D000140 6.1e-19 97.1 71 60.6
Prupe.6G167700 Prunus persica HOM05D000665 ORTHO05D000140 8.0e-19 96.7 71 54.9
Prupe.7G027800 Prunus persica HOM05D000665 ORTHO05D000140 8.0e-19 96.7 71 59.2
COL.COLO4_16082 Corchorus olitorius HOM05D000665 ORTHO05D000140 1.0e-18 96.3 71 62.0
FvH4_2g13781 Fragaria vesca HOM05D000665 ORTHO05D000140 1.8e-18 95.5 71 57.7
Medtr7g102860 Medicago truncatula HOM05D000665 ORTHO05D000140 5.2e-18 94.0 72 59.7
Prupe.1G245200 Prunus persica HOM05D000665 ORTHO05D000140 6.8e-18 93.6 71 53.5
Prupe.5G014400 Prunus persica HOM05D000665 ORTHO05D000140 1.2e-17 92.8 71 57.7
FAN27G2455 Fragaria x ananassa HOM05D001671 ORTHO05D000140 2.6e-17 91.7 71 54.9
FvH4_4g15662 Fragaria vesca HOM05D000665 ORTHO05D000140 5.7e-17 90.5 71 54.9
Prupe.4G256700 Prunus persica HOM05D000665 ORTHO05D000140 6.3e-16 87.0 71 50.7
FAN26G1049 Fragaria x ananassa HOM05D000665 ORTHO05D000140 2.4e-15 85.1 71 54.9
Prupe.5G014200 Prunus persica HOM05D000665 ORTHO05D000140 4.6e-14 80.9 57 56.1
Prupe.5G049300 Prunus persica HOM05D000665 ORTHO05D000140 5.6e-12 73.9 56 53.6
Nn6g33669 Nelumbo nucifera HOM05D000665 ORTHO05D000140 2.8e-11 71.6 72 45.8
FAN08G1891 Fragaria x ananassa HOM05D013617 ORTHO05D016313 8.0e-11 70.1 62 45.2
RcHm_v2.0_Chr7g0231381 Rosa chinensis HOM05D000665 ORTHO05D000140 4.0e-10 67.8 70 47.1
FAN08G1969 Fragaria x ananassa HOM05D000665 ORTHO05D000140 2.0e-09 65.5 49 53.1
Psat1g190200 Pisum sativum HOM05D000665 ORTHO05D000140 2.6e-09 65.1 52 55.8
Sed0003980 Sechium edule HOM05D000665 ORTHO05D000140 3.4e-09 64.7 71 36.6
Lj1g0000640 Lotus japonicus HOM05D000665 ORTHO05D000140 4.4e-09 64.3 71 46.5
Ah.12g055190 Amaranthus hybridus HOM05D000665 ORTHO05D000140 7.5e-09 63.5 71 38.0
TAR629G1231 Trochodendron aralioides HOM05D000665 ORTHO05D000140 7.5e-09 63.5 71 43.7
Ah.15g097210 Amaranthus hybridus HOM05D000665 ORTHO05D000140 9.8e-09 63.2 71 38.0
Haze_23288 Corylus avellana HOM05D000665 ORTHO05D000140 1.3e-08 62.8 71 39.4
Haze_23291 Corylus avellana HOM05D000665 ORTHO05D000140 1.3e-08 62.8 71 39.4
MBI06_g36653_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.7e-08 62.4 72 38.9
QL01p016365 Quercus lobata HOM05D000665 ORTHO05D000140 1.7e-08 62.4 71 39.4
Lalb_Chr15g0080181 Lupinus albus HOM05D000665 ORTHO05D000140 3.7e-08 61.2 71 35.2
MBI15_g16771_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.7e-08 61.2 72 38.9
MBI18_g46213_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.7e-08 61.2 72 38.9
AUR62027532 Chenopodium quinoa HOM05D000034 ORTHO05D000037 4.9e-08 60.8 71 33.8
MBI13_g15312_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.9e-08 60.8 72 38.9
MBI16_g18338_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.9e-08 60.8 72 38.9
Medtr3g045460 Medicago truncatula HOM05D000665 ORTHO05D000140 4.9e-08 60.8 71 35.2
Ca_02662_v3 Cicer arietinum L. HOM05D000665 ORTHO05D000140 6.4e-08 60.5 71 39.4
Dinv29316 Davidia involucrata HOM05D000001 ORTHO05D000003 6.4e-08 60.5 71 35.2
FAN24G3347 Fragaria x ananassa HOM05D000665 ORTHO05D016313 8.3e-08 60.1 71 43.7
MBI08_g15723_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 8.3e-08 60.1 72 38.9
Glyma.07G234900 Glycine max HOM05D000665 ORTHO05D000140 1.1e-07 59.7 71 40.8
MBI04_g40837_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000037 1.1e-07 59.7 73 39.7
TPR.G11842 Trifolium pratense HOM05D000001 ORTHO05D000003 1.1e-07 59.7 71 35.2
Gohir.D05G075500 Gossypium hirsutum HOM05D000665 ORTHO05D000140 1.4e-07 59.3 71 35.2
Duzib168G0826 Durio zibethinus HOM05D000665 ORTHO05D000140 1.9e-07 58.9 71 35.2
Nn2g14680 Nelumbo nucifera HOM05D000665 ORTHO05D000140 1.9e-07 58.9 71 39.4
Psat2g130400 Pisum sativum HOM05D000665 ORTHO05D000140 3.2e-07 58.2 71 33.8
COL.COLO4_06628 Corchorus olitorius HOM05D000665 ORTHO05D000140 4.1e-07 57.8 71 35.2
Lj6g0024114 Lotus japonicus HOM05D000665 ORTHO05D000140 4.1e-07 57.8 71 36.6
MBI16_g16473_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.1e-07 57.8 72 37.5
MBI17_g24558_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.1e-07 57.8 72 37.5
MBI18_g29062_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.1e-07 57.8 72 37.5
QL01p016350 Quercus lobata HOM05D000665 ORTHO05D000140 4.1e-07 57.8 71 38.0
TAR526G0001 Trochodendron aralioides HOM05D000665 ORTHO05D000140 5.4e-07 57.4 71 32.4
MBI05_g19984_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 7.0e-07 57.0 72 37.5
Phvul.006G016600 Phaseolus vulgaris HOM05D000665 ORTHO05D000140 7.0e-07 57.0 71 35.2
RcHm_v2.0_Chr2g0139691 Rosa chinensis HOM05D000665 ORTHO05D000140 7.0e-07 57.0 69 40.6
MBI01_g10235_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.2e-07 56.6 72 37.5
MBI12_g16610_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.2e-07 56.6 72 36.1
MBI17_g25961_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 9.2e-07 56.6 72 36.1
MBI01_g15675_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.2e-06 56.2 72 36.1
EL10Ac2g04238 Beta vulgaris HOM05D009145 ORTHO05D000140 1.6e-06 55.8 71 32.4
AUR62038998 Chenopodium quinoa HOM05D009145 ORTHO05D000140 1.6e-06 55.8 71 32.4
AUR62041048 Chenopodium quinoa HOM05D000034 ORTHO05D000037 1.6e-06 55.8 60 38.3
MBI10_g30247_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.6e-06 55.8 72 38.9
MBI15_g27516_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 1.6e-06 55.8 72 37.5
Gorai.009G076900 Gossypium raimondii HOM05D000665 ORTHO05D000140 2.0e-06 55.5 73 35.6
MBI02_g43807_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000037 2.0e-06 55.5 72 36.1
MBI15_g34423_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.0e-06 55.5 72 37.5
AUR62028861 Chenopodium quinoa HOM05D000034 ORTHO05D000037 2.7e-06 55.1 58 37.9
FvH4_6g32032 Fragaria vesca HOM05D000665 ORTHO05D000140 2.7e-06 55.1 69 37.7
FAN23G1453 Fragaria x ananassa HOM05D013617 ORTHO05D016313 2.7e-06 55.1 73 41.1
MBI11_g05798_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 2.7e-06 55.1 72 37.5
EL10Ac5g11631 Beta vulgaris HOM05D009145 ORTHO05D000140 3.5e-06 54.7 71 31.0
EL10As10g23957 Beta vulgaris HOM05D009145 ORTHO05D000140 3.5e-06 54.7 71 32.4
MBI08_g18910_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.5e-06 54.7 72 38.9
MBI08_g23110_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.5e-06 54.7 72 34.7
MBI17_g01906_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.5e-06 54.7 72 34.7
MBI17_g05527_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.5e-06 54.7 71 33.8
MBI19_g24053_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 3.5e-06 54.7 72 36.1
Thecc.09G253400 Theobroma cacao HOM05D000665 ORTHO05D000140 3.5e-06 54.7 71 35.2
MBI04_g21745_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.6e-06 54.3 72 36.1
MBI06_g12551_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 4.6e-06 54.3 72 37.5
QL02p032784 Quercus lobata HOM05D000665 ORTHO05D000140 4.6e-06 54.3 55 41.8
EL10Ac4g08060 Beta vulgaris HOM05D009145 ORTHO05D000140 6.0e-06 53.9 71 33.8
FAN08G1155 Fragaria x ananassa HOM05D013617 ORTHO05D016313 6.0e-06 53.9 54 46.3
MBI01_g44372_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.0e-06 53.9 72 34.7
MBI07_g46964_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.0e-06 53.9 72 36.1
MBI14_g10252_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.0e-06 53.9 72 33.3
MBI15_g35110_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.0e-06 53.9 72 36.1
MBI19_g47131_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 6.0e-06 53.9 72 36.1
RcHm_v2.0_Chr4g0405761 Rosa chinensis HOM05D000665 ORTHO05D000140 6.0e-06 53.9 56 44.6
MBI06_g21943_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 7.8e-06 53.5 72 36.1
MBI08_g29137_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000037 7.8e-06 53.5 72 34.7
MBI15_g27551_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 7.8e-06 53.5 72 36.1
MBI19_g21384_MAGBIO Magnolia biondii HOM05D000034 ORTHO05D000140 7.8e-06 53.5 72 36.1


User provided reference genes

Program Settings