Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 2.8e-100 368.6 187 100.0
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 5.5e-96 354.4 187 96.3
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.2e-88 328.6 187 88.8
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 4.6e-87 324.7 185 87.6
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 6.3e-84 314.3 181 89.0
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 5.3e-83 311.2 187 84.5
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 2.0e-82 309.3 187 84.0
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 5.9e-82 307.8 187 83.4
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.9e-81 305.4 177 85.3
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 3.7e-76 288.5 240 67.1
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 1.5e-74 283.1 171 82.5
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.4e-72 276.6 174 79.9
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 3.2e-72 275.4 175 78.9
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 3.2e-72 275.4 183 75.4
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 3.2e-72 275.4 172 79.7
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 4.2e-72 275.0 174 78.7
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 4.2e-72 275.0 185 75.1
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 3.6e-71 271.9 170 80.0
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.1e-71 271.2 183 74.9
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 2.3e-70 269.2 170 78.8
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 3.0e-70 268.9 183 75.4
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 6.7e-70 267.7 177 75.7
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 8.8e-70 267.3 177 75.1
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.0e-69 266.2 175 75.4
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 2.0e-69 266.2 174 74.7
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 4.4e-69 265.0 170 77.1
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 4.4e-69 265.0 184 71.2
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 4.4e-69 265.0 171 76.6
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 9.7e-69 263.8 165 80.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 1.7e-68 263.1 174 75.9
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.8e-68 262.3 170 76.5
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.8e-68 262.3 181 76.2
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 4.8e-68 261.5 179 73.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.1e-67 260.4 170 75.9
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 1.4e-67 260.0 173 75.1
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 3.1e-67 258.8 170 75.9
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 7.0e-67 257.7 168 76.2
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.2e-66 256.9 170 73.5
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 4.5e-66 255.0 173 74.0
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 5.9e-66 254.6 184 71.2
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 7.7e-66 254.2 173 72.3
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 1.0e-65 253.8 175 72.0
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 8.5e-65 250.8 173 70.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 2.5e-64 249.2 181 68.0
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 2.5e-64 249.2 172 71.5
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 4.2e-64 248.4 188 69.7
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 5.5e-64 248.1 177 70.1
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 7.2e-64 247.7 167 74.9
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 7.2e-64 247.7 169 71.0
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.1e-63 246.1 169 70.4
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 2.7e-63 245.7 168 73.2
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 6.1e-63 244.6 161 75.2
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 6.1e-63 244.6 205 63.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.4e-62 243.4 174 69.5
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.6e-61 239.2 175 69.1
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 9.7e-61 237.3 175 70.9
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.1e-59 233.8 170 71.2
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 3.1e-59 232.3 187 63.6
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 4.1e-59 231.9 187 64.7
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 5.3e-59 231.5 170 65.9
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-58 229.9 174 67.2
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.0e-57 227.3 184 64.1
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.7e-57 226.5 174 64.9
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.2e-57 226.1 174 64.9
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.5e-57 224.6 184 63.6
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 6.5e-57 224.6 184 63.6
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 8.5e-57 224.2 184 63.0
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.2e-56 222.2 185 65.9
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-55 219.9 163 67.5
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.4e-54 216.9 175 64.6
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.4e-54 216.9 162 69.8
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 4.0e-54 215.3 136 79.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 8.8e-54 214.2 161 67.1
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.4e-53 212.2 192 57.8
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 7.5e-53 211.1 144 74.3
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 9.8e-53 210.7 129 82.2
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 3.7e-52 208.8 169 65.1
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 7.0e-51 204.5 174 57.5
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.2e-50 203.8 174 57.5
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 1.6e-50 203.4 174 59.2
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.0e-50 203.0 137 75.2
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 3.5e-50 202.2 166 63.3
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 3.5e-50 202.2 128 79.7
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 4.5e-50 201.8 162 63.0
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 5.0e-49 198.4 151 65.6
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 9.4e-48 194.1 177 54.2
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 2.7e-47 192.6 177 55.4
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 3.6e-47 192.2 169 56.8
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 1.8e-46 189.9 127 74.0
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.0e-46 188.7 176 54.5
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 6.8e-46 188.0 176 54.5
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.5e-45 186.8 169 55.6
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 2.6e-45 186.0 157 56.1
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 2.6e-45 186.0 176 54.0
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 4.4e-45 185.3 169 57.4
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 9.8e-45 184.1 151 62.9
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 8.3e-44 181.0 197 53.8
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 1.8e-43 179.9 122 73.8
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 7.0e-43 177.9 179 52.0
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 1.2e-42 177.2 132 66.7
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 1.7e-41 173.3 180 51.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 2.3e-41 172.9 172 52.9
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 2.3e-41 172.9 172 52.9
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 3.8e-41 172.2 172 52.9
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.0e-41 171.8 169 53.8
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 6.6e-41 171.4 111 76.6
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-40 170.6 130 64.6
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-40 169.9 176 51.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 5.6e-40 168.3 180 50.6
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 8.0e-39 164.5 134 64.9
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 6.8e-38 161.4 171 50.9
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 9.8e-37 157.5 171 49.7
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 8.3e-36 154.5 133 59.4
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.2e-34 150.6 169 47.3
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 1.7e-33 146.7 119 60.5
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 3.0e-33 146.0 171 45.0
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.0e-33 146.0 176 43.2
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 3.9e-33 145.6 119 61.3
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.1e-32 144.1 171 47.4
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 9.5e-32 141.0 189 40.7
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-31 140.6 122 59.8
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 6.2e-31 138.3 194 42.3
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 8.0e-31 137.9 175 44.6
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 2.3e-30 136.3 158 50.0
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.0e-30 135.6 169 42.6
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 8.9e-30 134.4 175 44.0
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 8.9e-30 134.4 175 44.0
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 8.9e-30 134.4 143 49.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 4.9e-28 128.6 163 47.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 1.1e-27 127.5 172 43.0
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 5.4e-27 125.2 174 40.8
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.9e-24 116.7 78 71.8
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 1.2e-23 114.0 165 38.2
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 2.6e-21 106.3 122 48.4
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 3.7e-20 102.4 128 50.0
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.9e-19 100.1 154 37.7
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 4.6e-18 95.5 168 35.1
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 1.0e-17 94.4 55 83.6
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 1.3e-17 94.0 55 85.5
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 3.9e-17 92.4 64 76.6
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.1e-16 90.9 55 81.8
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.9e-16 90.1 52 86.5
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 5.6e-16 88.6 90 51.1
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 6.8e-14 81.6 98 49.0
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 1.2e-13 80.9 81 55.6
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.5e-13 80.5 52 76.9
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 1.7e-12 77.0 41 90.2
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 9.2e-11 71.2 67 56.7
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 3.0e-09 66.2 48 64.6
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 1.9e-08 63.5 64 48.4
Cfa024934 Carpinus fangiana HOM05D006964 ORTHO05D008861 1.4e-06 57.4 118 35.6


User provided reference genes

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