Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G280100 Glycine max HOM05D004435 ORTHO05D005103 1.1e-47 193.0 96 100.0
Glyma.07G054500 Glycine max HOM05D004435 ORTHO05D005103 4.0e-34 147.9 88 86.4
Glyma.16G023300 Glycine max HOM05D004435 ORTHO05D005103 4.0e-34 147.9 88 86.4
VMungo0331G1532 Vigna mungo HOM05D004435 ORTHO05D005103 1.5e-33 146.0 88 83.0
Phvul.010G115000 Phaseolus vulgaris HOM05D004435 ORTHO05D005103 2.6e-33 145.2 88 81.8
Lalb_Chr10g0100641 Lupinus albus HOM05D004435 ORTHO05D005103 3.4e-33 144.8 88 83.0
BcaC02g12673 Brassica carinata HOM05D004435 ORTHO05D005103 5.8e-33 144.1 88 81.8
BcaC02g12678 Brassica carinata HOM05D004435 ORTHO05D005103 5.8e-33 144.1 88 81.8
A05p01210 Brassica napus HOM05D004435 ORTHO05D005103 5.8e-33 144.1 88 81.8
C04p01360 Brassica napus HOM05D004435 ORTHO05D005103 5.8e-33 144.1 88 81.8
BolC4t21789H Brassica oleracea HOM05D004435 ORTHO05D005103 5.8e-33 144.1 88 81.8
BraA05t19122Z Brassica rapa HOM05D004435 ORTHO05D005103 5.8e-33 144.1 88 81.8
Thhalv10001279m.g Eutrema salsugineum HOM05D004435 ORTHO05D005103 5.8e-33 144.1 88 81.8
Lj3g0005802 Lotus japonicus HOM05D004435 ORTHO05D005103 5.8e-33 144.1 88 83.0
CARHR141900 Cardamine hirsuta HOM05D004435 ORTHO05D005103 7.5e-33 143.7 88 81.8
Psat4g214760 Pisum sativum HOM05D004435 ORTHO05D005103 7.5e-33 143.7 88 81.8
TPR.G20238 Trifolium pratense HOM05D004435 ORTHO05D005103 1.7e-32 142.5 88 81.8
arahy.Tifrunner.gnm1.ann1.VXNL4X Arachis hypogaea HOM05D004435 ORTHO05D005103 2.2e-32 142.1 88 80.7
arahy.Tifrunner.gnm1.ann1.Y0VUSY Arachis hypogaea HOM05D004435 ORTHO05D005103 2.2e-32 142.1 88 80.7
Medtr8g027425 Medicago truncatula HOM05D004435 ORTHO05D005103 2.9e-32 141.7 88 81.8
Sp4g28610 Schrenkiella parvula HOM05D004435 ORTHO05D005103 3.7e-32 141.4 88 79.5
Ca_23520_v3 Cicer arietinum L. HOM05D004435 ORTHO05D005103 4.9e-32 141.0 88 79.5
Ciclev10018429m.g Citrus clementina HOM05D004435 ORTHO05D005103 6.4e-32 140.6 88 80.7
Aa31LG1G27940 Aethionema arabicum HOM05D004435 ORTHO05D005103 8.3e-32 140.2 88 79.5
AL4G45990 Arabidopsis lyrata HOM05D004435 ORTHO05D005103 8.3e-32 140.2 88 80.7
AT2G46560 Arabidopsis thaliana HOM05D004435 ORTHO05D005103 8.3e-32 140.2 88 80.7
Aqoxy1G03073 Aquilegia oxysepala HOM05D004435 ORTHO05D005103 1.4e-31 139.4 88 78.4
CiPaw.01G077800 Carya illinoinensis HOM05D004435 ORTHO05D005103 1.4e-31 139.4 89 77.5
Nn1g00298 Nelumbo nucifera HOM05D004435 ORTHO05D005103 1.9e-31 139.0 90 76.7
THA.LOC104802083 Tarenaya hassleriana HOM05D004435 ORTHO05D005103 3.2e-31 138.3 88 78.4
Carub.0004s2928 Capsella rubella HOM05D004435 ORTHO05D005103 4.1e-31 137.9 88 79.5
Atru.chr5.694 Acer truncatum HOM05D004435 ORTHO05D005103 5.4e-31 137.5 90 76.7
MELO3C006012.2 Cucumis melo HOM05D004435 ORTHO05D005103 5.4e-31 137.5 90 74.4
CANSAT56G0169 Cannabis sativa HOM05D004435 ORTHO05D005103 7.0e-31 137.1 88 77.3
COL.COLO4_06228 Corchorus olitorius HOM05D004435 ORTHO05D005103 7.0e-31 137.1 88 77.3
Duzib133G0905 Durio zibethinus HOM05D004435 ORTHO05D005103 7.0e-31 137.1 88 77.3
Gohir.D11G102800 Gossypium hirsutum HOM05D004435 ORTHO05D005103 7.0e-31 137.1 88 77.3
Gorai.007G109900 Gossypium raimondii HOM05D004435 ORTHO05D005103 7.0e-31 137.1 88 77.3
MD01G1083800 Malus domestica HOM05D004435 ORTHO05D005103 7.0e-31 137.1 88 76.1
GSVIVG01027171001 Vitis vinifera HOM05D004435 ORTHO05D005103 7.0e-31 137.1 88 77.3
CAN.G1415.18 Capsicum annuum HOM05D004435 ORTHO05D005103 9.2e-31 136.7 88 79.5
Peaxi162Scf00345g00125 Petunia axillaris HOM05D004435 ORTHO05D005103 9.2e-31 136.7 88 79.5
Prupe.2G190800 Prunus persica HOM05D004435 ORTHO05D005103 9.2e-31 136.7 88 77.3
Solyc01g096110.3 Solanum lycopersicum HOM05D004435 ORTHO05D005103 9.2e-31 136.7 88 79.5
Sopen01g039830 Solanum pennellii HOM05D004435 ORTHO05D005103 9.2e-31 136.7 88 79.5
Thecc.01G340200 Theobroma cacao HOM05D004435 ORTHO05D005103 9.2e-31 136.7 88 76.1
Manes.01G244500 Manihot esculenta HOM05D004435 ORTHO05D005103 1.2e-30 136.3 88 77.3
QL08p045721 Quercus lobata HOM05D004435 ORTHO05D005103 1.2e-30 136.3 88 76.1
CsaV3_3G007940 Cucumis sativus L. HOM05D004435 ORTHO05D005103 1.6e-30 136.0 88 75.0
FvH4_7g16880 Fragaria vesca HOM05D004435 ORTHO05D005103 1.6e-30 136.0 88 76.1
FAN06G0620 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.6e-30 136.0 88 76.1
FAN06G2443 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.6e-30 136.0 88 76.1
Hma1.2p1_0101F.1_g049200 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.6e-30 136.0 90 76.7
Hma1.2p1_0101F.1_g049210 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 1.6e-30 136.0 90 76.7
Cpa.g.c29521 Carica papaya HOM05D004435 ORTHO05D005103 2.0e-30 135.6 88 77.3
Cfa003785 Carpinus fangiana HOM05D004435 ORTHO05D005103 2.0e-30 135.6 88 76.1
Haze_15676 Corylus avellana HOM05D004435 ORTHO05D005103 2.0e-30 135.6 88 76.1
Gohir.A11G098100 Gossypium hirsutum HOM05D004435 ORTHO05D005103 2.0e-30 135.6 88 76.1
MBI06_g44136_MAGBIO Magnolia biondii HOM05D004435 ORTHO05D005103 2.7e-30 135.2 88 76.1
Sed0001978 Sechium edule HOM05D004435 ORTHO05D005103 2.7e-30 135.2 88 73.9
ECA234G2843 Erigeron canadensis HOM05D004435 ORTHO05D005103 3.5e-30 134.8 88 76.1
Cc02_g39580 Coffea canephora HOM05D004435 ORTHO05D005103 4.6e-30 134.4 88 77.3
FAN10G0386 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.0e-30 134.0 88 75.0
FAN10G3841 Fragaria x ananassa HOM05D004435 ORTHO05D005103 6.0e-30 134.0 88 75.0
Nitab4.5_0007244g0030 Nicotiana tabacum HOM05D004435 ORTHO05D005103 6.0e-30 134.0 90 76.7
PGR044G1747 Punica granatum HOM05D004435 ORTHO05D005103 6.0e-30 134.0 88 76.1
RcHm_v2.0_Chr1g0360111 Rosa chinensis HOM05D004435 ORTHO05D005103 7.8e-30 133.7 88 75.0
Nitab4.5_0001763g0010 Nicotiana tabacum HOM05D004435 ORTHO05D005103 1.0e-29 133.3 90 76.7
Hund27186 Selenicereus undatus HOM05D004435 ORTHO05D005103 1.0e-29 133.3 88 75.0
Ah.05g179380 Amaranthus hybridus HOM05D004435 ORTHO05D005103 1.3e-29 132.9 88 75.0
Dinv34221 Davidia involucrata HOM05D004435 ORTHO05D005103 1.7e-29 132.5 88 76.1
Eucgr.E00041 Eucalyptus grandis HOM05D004435 ORTHO05D005103 1.7e-29 132.5 88 73.9
HanXRQChr17g0563351 Helianthus annuus HOM05D004435 ORTHO05D005103 1.7e-29 132.5 90 72.2
Lsat_1_v5_gn_4_33701 Lactuca sativa HOM05D004435 ORTHO05D005103 2.3e-29 132.1 90 72.2
Sc01g0002520 Simmondsia chinensis HOM05D004435 ORTHO05D005103 2.3e-29 132.1 92 70.7
CSS0028718 Camellia sinensis var. sinensis HOM05D004435 ORTHO05D005103 3.9e-29 131.3 88 73.9
Actinidia20252 Actinidia chinensis HOM05D004435 ORTHO05D005103 5.0e-29 131.0 88 71.6
ATR0605G097 Amborella trichopoda HOM05D004435 ORTHO05D005103 5.0e-29 131.0 88 75.0
DCAR_008668 Daucus carota HOM05D004435 ORTHO05D005103 6.6e-29 130.6 90 71.1
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 1.5e-28 129.4 92 69.6
Migut.B01890 Erythranthe guttata HOM05D004435 ORTHO05D005103 1.9e-28 129.0 90 71.1
FAN03G2945 Fragaria x ananassa HOM05D004435 ORTHO05D005103 1.9e-28 129.0 95 70.5
TWI14G0481 Tripterygium wilfordii HOM05D004435 ORTHO05D005103 1.9e-28 129.0 88 71.6
AUR62004511 Chenopodium quinoa HOM05D004435 ORTHO05D005103 2.5e-28 128.6 92 68.5
Rhsim07G0003000 Rhododendron simsii HOM05D004435 ORTHO05D005103 2.5e-28 128.6 91 69.2
ATR0242G001 Amborella trichopoda HOM05D004435 ORTHO05D005103 3.3e-28 128.3 88 73.9
PSO384G1989 Papaver somniferum HOM05D004435 ORTHO05D005103 3.3e-28 128.3 92 69.6
unitig_736.g22808 Utricularia gibba HOM05D004435 ORTHO05D005103 3.3e-28 128.3 90 71.1
Potri.002G173300 Populus trichocarpa HOM05D004435 ORTHO05D005103 5.6e-28 127.5 88 72.7
SGA_v2.0_scaffold5G03029 Striga asiatica HOM05D004435 ORTHO05D005103 5.6e-28 127.5 90 71.1
EL10Ac1g00244 Beta vulgaris HOM05D004435 ORTHO05D005103 7.3e-28 127.1 92 67.4
PSO135G0708 Papaver somniferum HOM05D004435 ORTHO05D005103 1.6e-27 125.9 92 68.5
vmacro04283 Vaccinium macrocarpon HOM05D004435 ORTHO05D005103 1.6e-27 125.9 99 66.7
Sabra02G0140000 Salix brachista HOM05D004435 ORTHO05D005103 2.1e-27 125.6 88 71.6
SEGI_18144 Sequoiadendron giganteum HOM05D004435 ORTHO05D005103 1.1e-26 123.2 88 69.3
Zm00001eb356500 Zea mays HOM05D004435 ORTHO05D005103 1.5e-25 119.4 88 68.2
CBR_g19326 Chara braunii HOM05D004435 ORTHO05D005103 1.2e-22 109.8 92 59.8
Pp3c3_34200 Physcomitrium patens HOM05D004435 ORTHO05D005103 1.2e-22 109.8 88 60.2
AagrBONN_evm.TU.Sc2ySwM_228.2861 Anthoceros agrestis HOM05D004435 ORTHO05D005103 2.3e-21 105.5 88 60.2
Mapoly0001s0466 Marchantia polymorpha HOM05D004435 ORTHO05D005103 1.9e-20 102.4 88 53.4
TAR374G0897 Trochodendron aralioides HOM05D004435 ORTHO05D005103 8.9e-18 93.6 55 81.8
Hma1.2p1_0101F.1_g049280 Hydrangea macrophylla HOM05D004435 ORTHO05D005103 2.2e-16 89.0 58 74.1
MCO11G580 Micromonas commoda HOM05D004435 ORTHO05D005103 3.8e-08 61.6 75 41.3
Cre04.g223000 Chlamydomonas reinhardtii HOM05D004435 ORTHO05D005103 8.4e-08 60.5 92 40.2
Cfa023431 Carpinus fangiana HOM05D004435 ORTHO05D005103 4.2e-07 58.2 89 39.3


User provided reference genes

Program Settings