Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 2.0e-94 349.4 214 100.0
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 3.1e-63 245.7 215 66.5
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 2.0e-54 216.5 211 64.0
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 3.5e-54 215.7 212 60.4
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 2.5e-52 209.5 212 59.0
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 5.5e-52 208.4 212 58.0
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.6e-51 206.8 211 63.5
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.7e-46 189.5 192 65.6
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 1.7e-40 170.2 215 49.8
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 8.3e-40 167.9 214 50.0
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 1.2e-38 164.1 213 48.4
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 1.0e-37 161.0 215 46.5
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 1.7e-37 160.2 212 46.7
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 2.3e-37 159.8 213 47.4
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 3.3e-36 156.0 215 46.5
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 6.2e-35 151.8 214 50.5
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.0e-34 151.0 215 46.0
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.4e-34 150.6 214 45.8
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.8e-34 150.2 220 44.5
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 2.3e-34 149.8 215 46.0
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.0e-34 149.1 213 47.9
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 5.2e-34 148.7 215 46.5
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 8.9e-34 147.9 213 47.4
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 2.0e-33 146.7 214 44.9
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.0e-33 146.7 215 45.6
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 3.4e-33 146.0 218 44.5
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 5.8e-33 145.2 212 45.3
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 9.8e-33 144.4 228 42.5
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 1.3e-32 144.1 213 43.7
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 1.3e-32 144.1 215 43.7
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.7e-32 143.7 214 48.1
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 2.2e-32 143.3 213 47.4
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 2.2e-32 143.3 203 47.8
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.2e-32 143.3 215 45.6
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 2.9e-32 142.9 215 43.7
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 1.1e-31 141.0 212 42.9
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.1e-31 141.0 214 45.8
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.1e-31 141.0 218 45.4
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 1.1e-31 141.0 213 43.7
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 3.2e-31 139.4 210 43.8
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 4.1e-31 139.0 210 44.3
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 5.4e-31 138.7 215 43.3
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.6e-30 137.1 215 42.8
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.7e-30 136.3 214 42.1
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 6.0e-30 135.2 212 40.6
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.3e-29 134.0 214 44.9
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 2.3e-29 133.3 214 43.0
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 3.9e-29 132.5 215 40.9
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 8.6e-29 131.3 215 45.6
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 2.5e-28 129.8 216 41.7
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 2.5e-28 129.8 214 42.1
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 2.5e-28 129.8 134 53.0
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 5.6e-28 128.6 216 43.5
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 2.1e-27 126.7 213 42.3
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 3.6e-27 125.9 226 41.2
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 8.1e-27 124.8 216 43.1
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 1.1e-26 124.4 205 42.9
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 1.1e-26 124.4 213 40.8
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 1.4e-26 124.0 214 43.5
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 1.8e-26 123.6 209 41.1
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 2.3e-26 123.2 201 41.8
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 3.1e-26 122.9 216 42.1
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 4.0e-26 122.5 215 39.5
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 5.2e-26 122.1 216 42.6
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 6.8e-26 121.7 215 40.0
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 2.0e-25 120.2 215 39.5
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 2.6e-25 119.8 214 39.7
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.6e-25 119.8 215 41.4
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 2.6e-25 119.8 215 39.5
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 2.6e-25 119.8 214 39.3
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 3.4e-25 119.4 213 41.3
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 4.4e-25 119.0 201 40.3
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.4e-25 119.0 214 40.7
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 4.4e-25 119.0 213 40.4
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 5.8e-25 118.6 210 40.5
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 5.8e-25 118.6 203 39.9
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 7.5e-25 118.2 209 42.1
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 7.5e-25 118.2 220 41.4
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 9.8e-25 117.9 208 39.9
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 9.8e-25 117.9 213 40.4
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 9.8e-25 117.9 215 42.3
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 9.8e-25 117.9 215 37.7
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.3e-24 117.5 216 41.2
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 2.9e-24 116.3 213 39.9
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 2.9e-24 116.3 213 39.9
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 3.7e-24 115.9 213 42.3
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 8.3e-24 114.8 217 40.1
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 8.3e-24 114.8 213 38.5
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 1.1e-23 114.4 199 40.7
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 1.1e-23 114.4 199 40.7
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 1.1e-23 114.4 214 39.7
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.1e-23 114.4 213 37.6
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 1.4e-23 114.0 215 38.6
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 2.4e-23 113.2 210 40.5
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 2.4e-23 113.2 215 40.9
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 2.4e-23 113.2 217 38.7
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 2.4e-23 113.2 215 38.1
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 4.1e-23 112.5 199 40.7
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 4.1e-23 112.5 215 37.7
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 7.1e-23 111.7 196 40.8
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 9.2e-23 111.3 215 37.7
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 1.2e-22 110.9 201 40.8
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 1.6e-22 110.5 200 41.5
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 4.6e-22 109.0 214 38.8
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 6.0e-22 108.6 199 39.7
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.0e-21 107.8 202 37.1
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 1.0e-21 107.8 212 39.6
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 1.0e-21 107.8 190 41.1
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 1.3e-21 107.5 140 47.1
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 1.3e-21 107.5 215 38.6
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.3e-21 106.7 197 41.1
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 2.3e-21 106.7 215 37.7
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 5.1e-21 105.5 142 47.2
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 6.6e-21 105.1 210 39.5
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 1.5e-20 104.0 215 38.1
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 1.9e-20 103.6 140 45.7
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 3.3e-20 102.8 203 38.9
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 4.3e-20 102.4 219 35.6
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 5.6e-20 102.1 208 36.5
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 5.6e-20 102.1 140 50.0
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 7.3e-20 101.7 215 39.1
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 1.6e-19 100.5 211 38.4
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 1.6e-19 100.5 211 36.5
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 4.7e-19 99.0 140 47.9
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 1.8e-18 97.1 198 38.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 2.3e-18 96.7 141 46.1
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 2.3e-18 96.7 213 33.3
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 2.3e-18 96.7 218 38.5
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 3.1e-18 96.3 214 37.9
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 8.9e-18 94.7 214 35.5
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 8.9e-18 94.7 194 39.7
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 2.0e-17 93.6 222 35.6
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.4e-17 92.4 147 44.2
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 5.8e-17 92.0 202 42.1
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 9.9e-17 91.3 216 34.3
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 2.2e-16 90.1 207 36.2
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 8.4e-16 88.2 143 42.0
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.1e-15 87.8 139 43.2
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.1e-15 87.8 203 31.0
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 1.2e-14 84.3 213 33.8
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 2.7e-14 83.2 207 38.2
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 3.0e-13 79.7 116 44.0
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.9e-12 77.0 206 32.0
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 5.6e-12 75.5 140 41.4
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 2.1e-11 73.6 212 28.8
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 3.6e-11 72.8 144 39.6
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 8.1e-11 71.6 213 31.9
FAN28G2101 Fragaria x ananassa HOM05D004648 ORTHO05D005782 2.0e-09 67.0 56 58.9
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 7.1e-07 58.5 135 36.3
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.6e-06 57.4 191 30.9


User provided reference genes

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