Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.4e-156 556.2 277 100.0
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 8.5e-154 547.0 278 98.6
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 3.8e-138 495.0 277 88.8
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 3.0e-135 485.3 270 88.9
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 1.2e-131 473.4 272 85.3
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 5.6e-121 438.0 277 79.8
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 1.4e-119 433.3 261 80.1
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 2.3e-119 432.6 253 83.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 2.0e-118 429.5 277 77.3
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.1e-113 413.7 270 75.9
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 5.6e-113 411.4 270 74.4
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 2.1e-112 409.5 269 74.3
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 1.4e-111 406.8 271 74.9
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 1.8e-111 406.4 272 73.5
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 6.8e-111 404.4 254 76.0
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.2e-110 403.7 274 72.3
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 3.7e-109 398.7 255 76.1
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.1e-108 397.1 252 75.4
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 1.1e-108 397.1 252 75.4
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 1.4e-108 396.7 270 73.3
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 1.4e-108 396.7 252 75.4
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 1.9e-108 396.4 252 78.2
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 3.2e-108 395.6 262 74.4
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 5.4e-108 394.8 252 74.6
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 7.1e-108 394.4 248 76.6
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 9.2e-108 394.0 271 70.8
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 2.1e-107 392.9 253 76.3
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 1.0e-106 390.6 273 71.8
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 1.0e-106 390.6 273 71.4
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 1.7e-106 389.8 273 70.3
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 2.3e-106 389.4 253 74.7
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 3.0e-106 389.0 254 74.4
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.9e-106 388.7 253 74.7
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 5.1e-106 388.3 272 71.3
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 8.6e-106 387.5 249 75.1
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 4.3e-105 385.2 264 71.6
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 5.6e-105 384.8 248 76.2
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 7.3e-105 384.4 272 71.0
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 2.1e-104 382.9 248 75.4
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 4.7e-104 381.7 271 70.1
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 4.0e-103 378.6 238 77.3
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 5.2e-103 378.3 245 74.3
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 8.9e-103 377.5 252 73.0
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 8.9e-103 377.5 242 74.8
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.5e-102 376.7 252 72.6
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 5.8e-102 374.8 272 70.2
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 5.8e-102 374.8 250 72.0
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 7.6e-102 374.4 254 72.0
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 9.9e-102 374.0 257 72.4
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 1.3e-101 373.6 265 70.2
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 2.4e-100 369.4 290 67.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 2.4e-100 369.4 254 70.1
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.1e-100 367.9 254 69.3
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 7.1e-100 367.9 254 69.3
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 9.2e-100 367.5 248 70.2
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 2.1e-99 366.3 248 70.2
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 2.1e-99 366.3 250 70.4
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 6.0e-99 364.8 248 69.8
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.0e-99 364.8 255 69.4
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.0e-98 364.0 270 67.4
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.3e-98 363.6 275 64.4
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 3.0e-98 362.5 254 68.1
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 3.0e-98 362.5 275 64.4
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 3.0e-98 362.5 275 64.4
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 3.0e-98 362.5 277 68.2
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 3.9e-98 362.1 248 69.8
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 8.6e-98 360.9 248 70.2
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 1.1e-97 360.5 253 68.0
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 1.1e-97 360.5 253 68.0
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.1e-97 360.5 313 61.0
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 1.5e-97 360.1 244 70.1
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 3.3e-97 359.0 254 68.9
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 3.3e-97 359.0 246 72.4
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 4.3e-97 358.6 290 63.1
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 9.6e-97 357.5 273 65.6
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 3.6e-96 355.5 252 67.5
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 1.4e-95 353.6 267 65.5
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.4e-95 353.6 252 69.0
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 2.4e-95 352.8 269 65.1
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 1.5e-94 350.1 249 67.9
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 2.6e-94 349.4 275 63.6
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 2.6e-94 349.4 267 64.4
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 3.8e-93 345.5 252 66.3
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 1.9e-92 343.2 238 68.5
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.2e-92 342.4 267 63.3
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 4.2e-92 342.0 273 66.3
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 3.5e-91 339.0 267 62.9
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.3e-88 330.5 253 65.2
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 3.6e-88 328.9 203 77.8
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 6.2e-88 328.2 220 73.6
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 5.8e-86 321.6 274 60.9
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.4e-79 299.7 274 58.0
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 5.3e-79 298.5 252 60.3
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 7.6e-78 294.7 300 54.3
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.7e-77 293.5 300 53.7
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 6.7e-74 281.6 238 60.1
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 1.6e-72 276.9 252 57.9
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 2.8e-72 276.2 169 75.7
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 3.1e-71 272.7 252 55.2
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 9.0e-71 271.2 256 51.6
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 1.2e-70 270.8 169 74.0
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 1.0e-69 267.7 277 53.1
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.7e-69 266.9 263 53.6
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 3.8e-69 265.8 264 53.8
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 2.5e-68 263.1 166 75.9
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 2.3e-66 256.5 254 53.9
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.1e-64 250.0 266 51.1
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 6.9e-63 245.0 156 74.4
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.5e-62 243.8 252 52.0
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.3e-58 229.9 172 68.6
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 1.4e-52 210.7 296 42.9
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 2.0e-49 200.3 238 46.2
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.7e-48 197.2 165 64.2
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 4.8e-48 195.7 258 43.4
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 5.9e-46 188.7 222 46.8
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 5.7e-41 172.2 118 69.5
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.6e-38 164.1 128 65.6
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 1.7e-37 160.6 153 57.5
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 1.5e-36 157.5 263 38.4
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-29 133.3 102 65.7
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-26 124.4 86 68.6
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 5.7e-25 119.0 76 75.0
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 9.5e-20 101.7 87 57.5
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-19 100.9 131 44.3
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 2.1e-19 100.5 66 71.2
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 4.0e-18 96.3 84 60.7
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 1.3e-16 91.3 155 37.4
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 1.6e-11 74.3 69 55.1
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.1e-11 73.9 39 87.2
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 5.7e-09 65.9 37 81.1
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 5.7e-09 65.9 37 81.1
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.2e-08 63.9 71 47.9
RcHm_v2.0_Chr4g0406881 Rosa chinensis HOM05D005868 ORTHO05D006964 2.9e-08 63.5 42 73.8
RcHm_v2.0_Chr5g0066691 Rosa chinensis HOM05D005868 ORTHO05D006964 5.4e-07 59.3 54 57.4
RcHm_v2.0_Chr7g0205611 Rosa chinensis HOM05D005868 ORTHO05D006964 1.6e-06 57.8 54 51.9


User provided reference genes

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