Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G262400 Glycine max HOM05D008112 ORTHO05D010225 2.6e-52 208.4 100 100.0
Phvul.003G035700 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 1.1e-31 139.8 103 69.9
TPR.G39819 Trifolium pratense HOM05D008112 ORTHO05D010225 3.6e-22 108.2 102 59.8
Lalb_Chr10g0100011 Lupinus albus HOM05D008112 ORTHO05D010225 8.1e-22 107.1 100 58.0
CiPaw.15G085200 Carya illinoinensis HOM05D008112 ORTHO05D010225 1.4e-21 106.3 109 53.2
Medtr1g110820 Medicago truncatula HOM05D008112 ORTHO05D010225 3.1e-21 105.1 103 51.5
Glyma.10G274200 Glycine max HOM05D008112 ORTHO05D010225 5.3e-21 104.4 102 54.9
Glyma.20G115800 Glycine max HOM05D008112 ORTHO05D010225 5.3e-21 104.4 103 55.3
Lj2g0015777 Lotus japonicus HOM05D008112 ORTHO05D010225 4.5e-20 101.3 100 58.0
Cfa018594 Carpinus fangiana HOM05D008112 ORTHO05D010225 1.1e-18 96.7 106 52.8
Hma1.2p1_0061F.1_g033900 Hydrangea macrophylla HOM05D008112 ORTHO05D010225 4.2e-18 94.7 99 47.5
TPR.G1513 Trifolium pratense HOM05D008112 ORTHO05D010225 9.3e-18 93.6 104 48.1
Phvul.007G027300 Phaseolus vulgaris HOM05D008112 ORTHO05D010225 2.7e-17 92.0 103 49.5
Thecc.02G230800 Theobroma cacao HOM05D008112 ORTHO05D010225 1.0e-16 90.1 99 46.5
Haze_17483 Corylus avellana HOM05D008112 ORTHO05D010225 5.1e-16 87.8 90 53.3
TAR622G0251 Trochodendron aralioides HOM05D008112 ORTHO05D010225 1.5e-15 86.3 105 48.6
Potri.008G120800 Populus trichocarpa HOM05D008112 ORTHO05D010225 4.3e-15 84.7 108 50.0
Manes.14G102600 Manihot esculenta HOM05D008112 ORTHO05D010225 5.6e-15 84.3 107 44.9
Potri.010G124900 Populus trichocarpa HOM05D008112 ORTHO05D010225 5.6e-15 84.3 107 48.6
Gorai.005G190400 Gossypium raimondii HOM05D008112 ORTHO05D010225 1.6e-14 82.8 100 44.0
CiPaw.16G065000 Carya illinoinensis HOM05D008112 ORTHO05D010225 2.8e-14 82.0 107 46.7
Lalb_Chr17g0342121 Lupinus albus HOM05D008112 ORTHO05D010225 2.8e-14 82.0 94 53.2
Gohir.D02G169900 Gossypium hirsutum HOM05D008112 ORTHO05D010225 3.7e-14 81.6 100 43.0
Medtr5g056935 Medicago truncatula HOM05D008112 ORTHO05D010225 3.7e-14 81.6 95 50.5
Lalb_Chr02g0145981 Lupinus albus HOM05D008112 ORTHO05D010225 8.1e-14 80.5 106 51.9
Nn3g17844 Nelumbo nucifera HOM05D008112 ORTHO05D010225 8.1e-14 80.5 111 45.0
Gohir.A03G146800 Gossypium hirsutum HOM05D008112 ORTHO05D010225 1.1e-13 80.1 100 44.0
Manes.06G068400 Manihot esculenta HOM05D008112 ORTHO05D010225 1.1e-13 80.1 108 45.4
TAR371G0405 Trochodendron aralioides HOM05D008112 ORTHO05D010225 1.2e-12 76.6 99 42.4
Prupe.1G311100 Prunus persica HOM05D008112 ORTHO05D010225 3.4e-12 75.1 106 41.5
Cpa.g.sc1.41 Carica papaya HOM05D008112 ORTHO05D010225 4.5e-12 74.7 102 43.1
Lalb_Chr06g0166071 Lupinus albus HOM05D008112 ORTHO05D010225 1.3e-11 73.2 90 51.1
Lj5g0021475 Lotus japonicus HOM05D008112 ORTHO05D010225 1.4e-10 69.7 72 52.8
Atru.chr11.70 Acer truncatum HOM05D008112 ORTHO05D010225 3.2e-10 68.6 97 42.3
CSS0024667 Camellia sinensis var. sinensis HOM05D008112 ORTHO05D010225 3.2e-10 68.6 105 39.0
FAN07G1645 Fragaria x ananassa HOM05D008112 ORTHO05D010225 4.2e-10 68.2 116 43.1
Rhsim12G0084800 Rhododendron simsii HOM05D008112 ORTHO05D010225 7.1e-10 67.4 92 45.7
RcHm_v2.0_Chr4g0435171 Rosa chinensis HOM05D008112 ORTHO05D010225 7.1e-10 67.4 117 43.6
FvH4_4g27360 Fragaria vesca HOM05D008112 ORTHO05D010225 9.3e-10 67.0 110 39.1
FAN12G3697 Fragaria x ananassa HOM05D008112 ORTHO05D010225 9.3e-10 67.0 110 39.1
FAN12G3827 Fragaria x ananassa HOM05D008112 ORTHO05D010225 9.3e-10 67.0 110 39.1
FAN22G0823 Fragaria x ananassa HOM05D008112 ORTHO05D010225 1.2e-09 66.6 116 42.2
MELO3C012251.2 Cucumis melo HOM05D008112 ORTHO05D010225 2.1e-09 65.9 87 41.4
SGA_v2.0_scaffold124G33520 Striga asiatica HOM05D008112 ORTHO05D010225 3.5e-09 65.1 91 39.6
Lsat_1_v5_gn_4_17580 Lactuca sativa HOM05D008112 ORTHO05D010225 1.8e-08 62.8 109 39.4
Sc11g0003420 Simmondsia chinensis HOM05D008112 ORTHO05D010225 3.0e-08 62.0 105 35.2
QL01p042495 Quercus lobata HOM05D008112 ORTHO05D010225 5.1e-08 61.2 71 45.1
Ah.03g137650 Amaranthus hybridus HOM05D008112 ORTHO05D010225 8.7e-08 60.5 99 34.3
DCAR_023658 Daucus carota HOM05D008112 ORTHO05D010225 8.7e-08 60.5 112 39.3
Dinv34826 Davidia involucrata HOM05D008112 ORTHO05D010225 3.3e-07 58.5 100 36.0
Sabra10G0094800 Salix brachista HOM05D008112 ORTHO05D010225 3.3e-07 58.5 85 43.5
Ciclev10017355m.g Citrus clementina HOM05D008112 ORTHO05D010225 5.7e-07 57.8 83 41.0
Aa31LG2G6430 Aethionema arabicum HOM05D010264 ORTHO05D012423 7.4e-07 57.4 71 45.1
CsaV3_5G034340 Cucumis sativus L. HOM05D008112 ORTHO05D010225 7.4e-07 57.4 48 54.2
TAR629G1885 Trochodendron aralioides HOM05D008112 ORTHO05D010225 7.4e-07 57.4 68 45.6
Aqoxy3G00299 Aquilegia oxysepala HOM05D008112 ORTHO05D010225 1.3e-06 56.6 36 69.4
MSTRG.840 Avicennia marina HOM05D008112 ORTHO05D010225 1.6e-06 56.2 105 32.4
Eucgr.B03015 Eucalyptus grandis HOM05D008112 ORTHO05D010225 2.8e-06 55.5 105 34.3
SalBow8G4149 Salvia bowleyana HOM05D008112 ORTHO05D010225 3.7e-06 55.1 102 41.2
Aa31LG7G9070 Aethionema arabicum HOM05D010181 ORTHO05D012280 4.8e-06 54.7 99 34.3
CARHR026030 Cardamine hirsuta HOM05D010181 ORTHO05D012280 8.2e-06 53.9 88 35.2


User provided reference genes

Program Settings