Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G262200 Glycine max HOM05D003518 ORTHO05D005164 7.1e-58 226.9 101 100.0
Glyma.03G019200 Glycine max HOM05D003518 ORTHO05D005164 3.1e-13 78.6 43 74.4
Phvul.010G088200 Phaseolus vulgaris HOM05D003518 ORTHO05D005164 5.3e-13 77.8 43 72.1
Prupe.2G151300 Prunus persica HOM05D003518 ORTHO05D005164 1.2e-12 76.6 43 69.8
VMungo0331G0661 Vigna mungo HOM05D003518 ORTHO05D005164 1.2e-12 76.6 43 69.8
Glyma.07G080800 Glycine max HOM05D003518 ORTHO05D005164 1.6e-12 76.3 43 72.1
TWI14G0835 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 2.0e-12 75.9 43 67.4
THA.LOC104802006 Tarenaya hassleriana HOM05D003518 ORTHO05D005164 3.5e-12 75.1 43 62.8
CSS0040926 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D005164 4.5e-12 74.7 43 65.1
MD02G1197300 Malus domestica HOM05D003518 ORTHO05D005164 4.5e-12 74.7 43 65.1
AT2G45670 Arabidopsis thaliana HOM05D003518 ORTHO05D005164 5.9e-12 74.3 43 67.4
Carub.0004s2832 Capsella rubella HOM05D003518 ORTHO05D005164 5.9e-12 74.3 43 67.4
Dinv43741 Davidia involucrata HOM05D003518 ORTHO05D005164 5.9e-12 74.3 43 62.8
Lj9C575T5 Lonicera japonica HOM05D003518 ORTHO05D005164 5.9e-12 74.3 43 65.1
Hund16973 Selenicereus undatus HOM05D003518 ORTHO05D005164 5.9e-12 74.3 43 65.1
Aa31LG1G27140 Aethionema arabicum HOM05D003518 ORTHO05D005164 7.7e-12 73.9 43 65.1
COL.COLO4_12652 Corchorus olitorius HOM05D003518 ORTHO05D005164 7.7e-12 73.9 43 60.5
Thhalv10001388m.g Eutrema salsugineum HOM05D003518 ORTHO05D005164 1.0e-11 73.6 43 65.1
Sp4g27710 Schrenkiella parvula HOM05D003518 ORTHO05D005164 1.0e-11 73.6 43 65.1
Nn6g34312 Nelumbo nucifera HOM05D003518 ORTHO05D005164 1.3e-11 73.2 43 67.4
BcaB06g29432 Brassica carinata HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 62.8
A04p33950 Brassica napus HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 62.8
C04p71760 Brassica napus HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 62.8
BraA04t18856Z Brassica rapa HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 62.8
FvH4_7g12710 Fragaria vesca HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 65.1
FAN01G1761 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 65.1
FAN03G3110 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 65.1
FAN06G1131 Fragaria x ananassa HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 65.1
MD07G1123700 Malus domestica HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 62.8
Rhsim01G0160000 Rhododendron simsii HOM05D003518 ORTHO05D005164 1.7e-11 72.8 43 62.8
Atru.chr5.372 Acer truncatum HOM05D003518 ORTHO05D005164 2.2e-11 72.4 43 65.1
BcaB01g03262 Brassica carinata HOM05D003518 ORTHO05D005164 2.2e-11 72.4 43 62.8
FAN10G3707 Fragaria x ananassa HOM05D003518 ORTHO05D005164 2.2e-11 72.4 43 65.1
FAN10G3827 Fragaria x ananassa HOM05D003518 ORTHO05D005164 2.2e-11 72.4 43 65.1
TWI59G1247 Tripterygium wilfordii HOM05D003518 ORTHO05D005164 2.9e-11 72.0 43 65.1
FAN06G5121 Fragaria x ananassa HOM05D003518 ORTHO05D005164 3.8e-11 71.6 43 62.8
PGR042G3961 Punica granatum HOM05D003518 ORTHO05D005164 3.8e-11 71.6 43 60.5
BraA03t11733Z Brassica rapa HOM05D003518 ORTHO05D005164 5.0e-11 71.2 43 60.5
RcHm_v2.0_Chr1g0351731 Rosa chinensis HOM05D003518 ORTHO05D005164 5.0e-11 71.2 43 62.8
BcaC02g07077 Brassica carinata HOM05D003518 ORTHO05D005164 6.5e-11 70.9 43 62.8
BolC4t28675H Brassica oleracea HOM05D003518 ORTHO05D005164 6.5e-11 70.9 43 62.8
Lsat_1_v5_gn_4_37220 Lactuca sativa HOM05D003518 ORTHO05D005164 6.5e-11 70.9 43 67.4
MBI11_g05096_MAGBIO Magnolia biondii HOM05D003518 ORTHO05D005164 6.5e-11 70.9 43 60.5
Nn1g01294 Nelumbo nucifera HOM05D003518 ORTHO05D005164 6.5e-11 70.9 43 65.1
A03p25290 Brassica napus HOM05D003518 ORTHO05D005164 8.5e-11 70.5 43 60.5
C03p30180 Brassica napus HOM05D003518 ORTHO05D005164 8.5e-11 70.5 43 60.5
ECA234G2542 Erigeron canadensis HOM05D003518 ORTHO05D005164 8.5e-11 70.5 43 67.4
AL4G44840 Arabidopsis lyrata HOM05D003518 ORTHO05D005164 1.1e-10 70.1 43 65.1
arahy.Tifrunner.gnm1.ann1.I486B7 Arachis hypogaea HOM05D003518 ORTHO05D005164 1.1e-10 70.1 43 60.5
BcaC01g05115 Brassica carinata HOM05D003518 ORTHO05D005164 1.1e-10 70.1 43 60.5
BolC3t15366H Brassica oleracea HOM05D003518 ORTHO05D005164 1.1e-10 70.1 43 60.5
CiPaw.01G258000 Carya illinoinensis HOM05D003518 ORTHO05D005164 1.1e-10 70.1 43 60.5
Gohir.A12G102800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 1.1e-10 70.1 43 58.1
HanXRQChr16g0523541 Helianthus annuus HOM05D003518 ORTHO05D005164 1.1e-10 70.1 43 67.4
Lj3g0010840 Lotus japonicus HOM05D003518 ORTHO05D005164 1.1e-10 70.1 43 60.5
Gohir.A11G083800 Gossypium hirsutum HOM05D003518 ORTHO05D005164 1.5e-10 69.7 43 62.8
Gohir.D12G106000 Gossypium hirsutum HOM05D003518 ORTHO05D005164 1.5e-10 69.7 43 58.1
Gorai.007G093900 Gossypium raimondii HOM05D003518 ORTHO05D005164 1.5e-10 69.7 43 62.8
Gorai.008G115300 Gossypium raimondii HOM05D003518 ORTHO05D005164 1.5e-10 69.7 43 58.1
Lsat_1_v5_gn_7_6740 Lactuca sativa HOM05D003518 ORTHO05D005164 1.9e-10 69.3 43 65.1
Oeu059219.1 Olea europaea HOM05D003518 ORTHO05D005164 1.9e-10 69.3 43 62.8
MELO3C006158.2 Cucumis melo HOM05D003518 ORTHO05D005164 2.5e-10 68.9 43 65.1
CsaV3_3G009390 Cucumis sativus L. HOM05D003518 ORTHO05D005164 2.5e-10 68.9 43 65.1
Dinv32408 Davidia involucrata HOM05D003518 ORTHO05D005164 2.5e-10 68.9 43 62.8
Sc02g0002290 Simmondsia chinensis HOM05D003518 ORTHO05D005164 4.2e-10 68.2 43 60.5
ATR0661G335 Amborella trichopoda HOM05D003518 ORTHO05D005164 5.5e-10 67.8 43 60.5
Ciclev10019439m.g Citrus clementina HOM05D003518 ORTHO05D005164 5.5e-10 67.8 43 58.1
Hund27333 Selenicereus undatus HOM05D003518 ORTHO05D005164 5.5e-10 67.8 43 60.5
Aqoxy7G00493 Aquilegia oxysepala HOM05D003518 ORTHO05D005164 7.2e-10 67.4 43 55.8
Sed0024132 Sechium edule HOM05D003518 ORTHO05D005164 7.2e-10 67.4 43 62.8
CANSAT56G2265 Cannabis sativa HOM05D003518 ORTHO05D005164 9.4e-10 67.0 43 58.1
TAR614G0002 Trochodendron aralioides HOM05D003518 ORTHO05D005164 9.4e-10 67.0 43 58.1
BcaB01g03260 Brassica carinata HOM05D003518 ORTHO05D005164 1.2e-09 66.6 40 62.5
Duzib133G1143 Durio zibethinus HOM05D003518 ORTHO05D005164 1.2e-09 66.6 43 55.8
Manes.01G263400 Manihot esculenta HOM05D003518 ORTHO05D005164 1.2e-09 66.6 43 58.1
Potri.002G151800 Populus trichocarpa HOM05D003518 ORTHO05D005164 1.2e-09 66.6 43 60.5
Potri.014G074300 Populus trichocarpa HOM05D003518 ORTHO05D005164 1.2e-09 66.6 43 60.5
SalBow7G3081 Salvia bowleyana HOM05D003518 ORTHO05D005164 1.2e-09 66.6 43 58.1
arahy.Tifrunner.gnm1.ann1.UCSC4W Arachis hypogaea HOM05D003518 ORTHO05D005164 1.6e-09 66.2 43 58.1
Cpa.g.sc18.167 Carica papaya HOM05D003518 ORTHO05D005164 1.6e-09 66.2 43 58.1
DCAR_006891 Daucus carota HOM05D003518 ORTHO05D005164 1.6e-09 66.2 43 62.8
ECA236G3950 Erigeron canadensis HOM05D003518 ORTHO05D005164 1.6e-09 66.2 42 61.9
Sed0008201 Sechium edule HOM05D003518 ORTHO05D005164 1.6e-09 66.2 43 65.1
TAR636G1560 Trochodendron aralioides HOM05D003518 ORTHO05D005164 1.6e-09 66.2 43 60.5
Migut.B01669 Erythranthe guttata HOM05D003518 ORTHO05D005164 2.1e-09 65.9 43 55.8
Haze_16711 Corylus avellana HOM05D003518 ORTHO05D005164 2.7e-09 65.5 43 58.1
Thecc.01G371200 Theobroma cacao HOM05D003518 ORTHO05D005164 2.7e-09 65.5 43 55.8
Ah.05g175810 Amaranthus hybridus HOM05D003518 ORTHO05D005164 3.6e-09 65.1 42 57.1
MSTRG.20781 Avicennia marina HOM05D003518 ORTHO05D005164 3.6e-09 65.1 43 58.1
Hma1.2p1_0132F.1_g060640 Hydrangea macrophylla HOM05D003518 ORTHO05D005164 3.6e-09 65.1 43 58.1
Sabra02G0120000 Salix brachista HOM05D003518 ORTHO05D005164 3.6e-09 65.1 43 60.5
SGA_v2.0_scaffold153G37052 Striga asiatica HOM05D003518 ORTHO05D005164 4.7e-09 64.7 43 55.8
ClCG05G001980 Citrullus lanatus HOM05D003518 ORTHO05D005164 6.1e-09 64.3 43 62.8
CSS0020000 Camellia sinensis var. sinensis HOM05D003518 ORTHO05D005164 8.0e-09 63.9 40 60.0
DCAR_015924 Daucus carota HOM05D003518 ORTHO05D005164 8.0e-09 63.9 43 55.8
HanXRQChr06g0169291 Helianthus annuus HOM05D003518 ORTHO05D005164 8.0e-09 63.9 43 60.5
Sabra14G0053000 Salix brachista HOM05D003518 ORTHO05D005164 8.0e-09 63.9 40 62.5
vmacro20980 Vaccinium macrocarpon HOM05D003518 ORTHO05D005164 8.0e-09 63.9 43 58.1
CiPaw.02G164700 Carya illinoinensis HOM05D003518 ORTHO05D005164 1.0e-08 63.5 43 53.5
Eucgr.E01329 Eucalyptus grandis HOM05D003518 ORTHO05D005164 1.4e-08 63.2 43 55.8
HanXRQChr04g0122151 Helianthus annuus HOM05D003518 ORTHO05D005164 1.4e-08 63.2 43 58.1
Oeu024431.2 Olea europaea HOM05D003518 ORTHO05D005164 1.4e-08 63.2 43 60.5
AUR62033382 Chenopodium quinoa HOM05D003518 ORTHO05D005164 1.8e-08 62.8 43 53.5
Lalb_Chr17g0340051 Lupinus albus HOM05D003518 ORTHO05D005164 1.8e-08 62.8 43 55.8
Manes.05G041800 Manihot esculenta HOM05D003518 ORTHO05D005164 1.8e-08 62.8 43 55.8
Medtr8g033180 Medicago truncatula HOM05D003518 ORTHO05D005164 1.8e-08 62.8 43 58.1
EL10Ac1g00954 Beta vulgaris HOM05D003518 ORTHO05D005164 2.3e-08 62.4 43 51.2
Duzib138G0903 Durio zibethinus HOM05D003518 ORTHO05D005164 2.3e-08 62.4 43 53.5
Psat4g198920 Pisum sativum HOM05D003518 ORTHO05D005164 4.0e-08 61.6 43 58.1
Sc23g0003400 Simmondsia chinensis HOM05D003518 ORTHO05D005164 4.0e-08 61.6 43 55.8
Lalb_Chr04g0256591 Lupinus albus HOM05D003518 ORTHO05D005164 8.8e-08 60.5 43 53.5
QL08p051054 Quercus lobata HOM05D003518 ORTHO05D005164 1.1e-07 60.1 43 55.8
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.1e-07 60.1 43 55.8
arahy.Tifrunner.gnm1.ann1.4HY23M Arachis hypogaea HOM05D003518 ORTHO05D005164 2.0e-07 59.3 40 60.0
arahy.Tifrunner.gnm1.ann1.N1W82K Arachis hypogaea HOM05D003518 ORTHO05D005164 2.0e-07 59.3 40 60.0
CDE04G1942 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 3.3e-07 58.5 41 48.8
SEGI_40964 Sequoiadendron giganteum HOM05D003518 ORTHO05D005164 4.4e-07 58.2 41 53.7
CAN.G170.67 Capsicum annuum HOM05D003518 ORTHO05D005164 5.7e-07 57.8 43 53.5
MD15G1322400 Malus domestica HOM05D003518 ORTHO05D005164 7.5e-07 57.4 35 60.0
AUR62004275 Chenopodium quinoa HOM05D003518 ORTHO05D005164 2.2e-06 55.8 40 52.5
PSO478G4904 Papaver somniferum HOM05D003518 ORTHO05D005164 2.2e-06 55.8 41 53.7
PSO782G5439 Papaver somniferum HOM05D003518 ORTHO05D005164 2.2e-06 55.8 41 53.7
Haze_10897 Corylus avellana HOM05D003518 ORTHO05D005164 2.8e-06 55.5 40 52.5


User provided reference genes

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