Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G250600 Glycine max HOM05D000293 ORTHO05D046799 9.1e-110 400.2 197 100.0
Glyma.18G273300 Glycine max HOM05D000293 ORTHO05D000180 6.4e-79 297.7 192 82.8
Phvul.008G028000 Phaseolus vulgaris HOM05D000293 ORTHO05D046799 8.7e-60 234.2 194 66.0
Glyma.18G273400 Glycine max HOM05D000293 ORTHO05D000180 1.5e-51 206.8 176 67.6
VMungo1383G2519 Vigna mungo HOM05D000293 ORTHO05D000180 4.8e-50 201.8 180 64.4
Lj1g0012832 Lotus japonicus HOM05D000293 ORTHO05D000180 1.3e-36 157.1 162 56.8
Dinv33858 Davidia involucrata HOM05D000293 ORTHO05D000180 2.2e-18 96.7 163 41.7
Cpa.g.sc14.220 Carica papaya HOM05D000293 ORTHO05D000180 2.5e-14 83.2 155 38.1
Cfa007690 Carpinus fangiana HOM05D000293 ORTHO05D000180 4.2e-14 82.4 138 40.6
Hund27787 Selenicereus undatus HOM05D000293 ORTHO05D000180 9.4e-14 81.3 151 41.7
Hund27790 Selenicereus undatus HOM05D000293 ORTHO05D000180 9.4e-14 81.3 151 41.7
Atru.chr8.672 Acer truncatum HOM05D000293 ORTHO05D000180 1.6e-13 80.5 173 38.7
QL02p066032 Quercus lobata HOM05D000293 ORTHO05D000180 2.7e-13 79.7 144 41.0
arahy.Tifrunner.gnm1.ann1.RF21DW Arachis hypogaea HOM05D000293 ORTHO05D000180 4.7e-13 79.0 170 35.3
Prupe.3G249600 Prunus persica HOM05D000293 ORTHO05D000180 8.0e-13 78.2 179 36.3
Thecc.04G105300 Theobroma cacao HOM05D000293 ORTHO05D000180 1.4e-12 77.4 164 36.6
Hma1.2p1_1502F.1_g287430 Hydrangea macrophylla HOM05D000293 ORTHO05D000180 1.8e-12 77.0 133 42.1
Hma1.2p1_2951F.1_g330705 Hydrangea macrophylla HOM05D000293 ORTHO05D000180 1.8e-12 77.0 133 42.1
Hund13679 Selenicereus undatus HOM05D000293 ORTHO05D000180 1.8e-12 77.0 181 40.3
Gohir.A07G180000 Gossypium hirsutum HOM05D000293 ORTHO05D000180 3.0e-12 76.3 134 35.8
Gohir.D07G186900 Gossypium hirsutum HOM05D000293 ORTHO05D000180 3.0e-12 76.3 134 35.8
Gorai.001G207500 Gossypium raimondii HOM05D000293 ORTHO05D000180 3.0e-12 76.3 134 35.8
TAR629G1151 Trochodendron aralioides HOM05D000293 ORTHO05D000180 3.0e-12 76.3 157 35.7
EL10Ac2g04446 Beta vulgaris HOM05D000293 ORTHO05D000180 1.1e-11 74.3 139 41.0
MD17G1065100 Malus domestica HOM05D000293 ORTHO05D000180 2.6e-11 73.2 150 34.7
BcaC06g33712 Brassica carinata HOM05D000293 ORTHO05D000180 4.4e-11 72.4 147 36.7
C07p38450 Brassica napus HOM05D000293 ORTHO05D000180 4.4e-11 72.4 147 36.7
BolC7t44371H Brassica oleracea HOM05D000293 ORTHO05D000180 4.4e-11 72.4 147 36.7
AL5G19870 Arabidopsis lyrata HOM05D000293 ORTHO05D000180 5.7e-11 72.0 143 37.8
SGA_v2.0_scaffold148G36436 Striga asiatica HOM05D000293 ORTHO05D000180 7.4e-11 71.6 169 34.9
Lj4C122T7 Lonicera japonica HOM05D000293 ORTHO05D000180 3.7e-10 69.3 140 41.4
MSTRG.3371 Avicennia marina HOM05D000293 ORTHO05D000180 4.8e-10 68.9 163 32.5
BcaC04g23828 Brassica carinata HOM05D000293 ORTHO05D000180 4.8e-10 68.9 173 34.7
C02p55980 Brassica napus HOM05D000293 ORTHO05D000180 4.8e-10 68.9 144 37.5
BolC2t11655H Brassica oleracea HOM05D000293 ORTHO05D000180 4.8e-10 68.9 144 37.5
Rhsim10G0056300 Rhododendron simsii HOM05D000293 ORTHO05D000180 6.3e-10 68.6 155 35.5
CSS0027703 Camellia sinensis var. sinensis HOM05D000293 ORTHO05D000180 1.1e-09 67.8 155 36.1
A02p36940 Brassica napus HOM05D000293 ORTHO05D000180 1.4e-09 67.4 144 37.5
BraA02t08684Z Brassica rapa HOM05D000293 ORTHO05D000180 1.4e-09 67.4 144 37.5
MBI07_g08904_MAGBIO Magnolia biondii HOM05D000293 ORTHO05D000180 1.4e-09 67.4 166 37.3
C09p04380 Brassica napus HOM05D000293 ORTHO05D000180 1.8e-09 67.0 164 34.8
BolC9t53368H Brassica oleracea HOM05D000293 ORTHO05D000180 1.8e-09 67.0 164 34.8
A09p04160 Brassica napus HOM05D000293 ORTHO05D000180 3.1e-09 66.2 143 37.1
BraA09t36052Z Brassica rapa HOM05D000293 ORTHO05D000180 3.1e-09 66.2 143 37.1
Manes.02G058900 Manihot esculenta HOM05D000293 ORTHO05D000180 3.1e-09 66.2 156 38.5
arahy.Tifrunner.gnm1.ann1.I62GV5 Arachis hypogaea HOM05D000293 ORTHO05D000180 5.3e-09 65.5 159 32.1
BcaB07g30066 Brassica carinata HOM05D000293 ORTHO05D000180 7.0e-09 65.1 149 35.6
Cc07_g04430 Coffea canephora HOM05D000293 ORTHO05D000180 7.0e-09 65.1 157 35.7
ATR0787G088 Amborella trichopoda HOM05D000293 ORTHO05D000180 1.6e-08 63.9 134 40.3
Duzib211G0627 Durio zibethinus HOM05D000293 ORTHO05D000180 1.6e-08 63.9 170 36.5
Nitab4.5_0008604g0010 Nicotiana tabacum HOM05D000293 ORTHO05D000180 1.6e-08 63.9 187 32.6
Actinidia18077 Actinidia chinensis HOM05D000293 ORTHO05D000180 2.0e-08 63.5 155 36.1
Thhalv10005370m.g Eutrema salsugineum HOM05D000293 ORTHO05D000180 2.0e-08 63.5 150 34.7
Haze_14387 Corylus avellana HOM05D000293 ORTHO05D000180 2.6e-08 63.2 100 44.0
QL02p066058 Quercus lobata HOM05D000293 ORTHO05D000180 2.6e-08 63.2 138 39.9
AT3G30210 Arabidopsis thaliana HOM05D000293 ORTHO05D000180 3.5e-08 62.8 140 35.7
CiPaw.03G083600 Carya illinoinensis HOM05D000293 ORTHO05D000180 3.5e-08 62.8 136 38.2
Sc10g0000630 Simmondsia chinensis HOM05D000293 ORTHO05D000180 3.5e-08 62.8 171 32.2
Peaxi162Scf00020g02349 Petunia axillaris HOM05D000293 ORTHO05D000180 4.5e-08 62.4 160 34.4
TAR371G1218 Trochodendron aralioides HOM05D000293 ORTHO05D000180 4.5e-08 62.4 140 35.0
BcaC03g17607 Brassica carinata HOM05D000293 ORTHO05D000180 5.9e-08 62.0 144 36.1
Haze_14388 Corylus avellana HOM05D000293 ORTHO05D000180 5.9e-08 62.0 139 35.3
Duzib133G1518 Durio zibethinus HOM05D000293 ORTHO05D000180 5.9e-08 62.0 165 36.4
PGR004G0244 Punica granatum HOM05D000293 ORTHO05D000180 5.9e-08 62.0 167 32.3
TAR365G0025 Trochodendron aralioides HOM05D000293 ORTHO05D000180 5.9e-08 62.0 157 34.4
TAR365G0338 Trochodendron aralioides HOM05D000293 ORTHO05D000180 5.9e-08 62.0 157 34.4
vmacro05616 Vaccinium macrocarpon HOM05D000293 ORTHO05D000180 5.9e-08 62.0 135 36.3
Ca_09796_v3 Cicer arietinum L. HOM05D000293 ORTHO05D000180 7.7e-08 61.6 146 34.9
Oeu062174.1 Olea europaea HOM05D000293 ORTHO05D000180 1.0e-07 61.2 158 34.2
Sp2g18110 Schrenkiella parvula HOM05D000293 ORTHO05D000180 1.0e-07 61.2 144 36.8
MD09G1073600 Malus domestica HOM05D000293 ORTHO05D000180 1.3e-07 60.8 186 31.2
A06p39770 Brassica napus HOM05D000293 ORTHO05D000180 1.7e-07 60.5 178 33.7
BraA06t26892Z Brassica rapa HOM05D000293 ORTHO05D000180 1.7e-07 60.5 178 33.7
Gohir.A07G079200 Gossypium hirsutum HOM05D000293 ORTHO05D000180 1.7e-07 60.5 35 77.1
Nn1g03006 Nelumbo nucifera HOM05D000293 ORTHO05D000180 1.7e-07 60.5 169 30.2
QL02p066042 Quercus lobata HOM05D000293 ORTHO05D000180 1.7e-07 60.5 169 32.5
Psat6g108400 Pisum sativum HOM05D000293 ORTHO05D000180 2.2e-07 60.1 155 34.2
Gohir.D07G084500 Gossypium hirsutum HOM05D000293 ORTHO05D000180 2.9e-07 59.7 39 69.2
Gorai.001G090100 Gossypium raimondii HOM05D000293 ORTHO05D000180 2.9e-07 59.7 39 69.2
Glyma.10G132200 Glycine max HOM05D000293 ORTHO05D000180 3.8e-07 59.3 172 30.8
Nitab4.5_0006516g0020 Nicotiana tabacum HOM05D000293 ORTHO05D000180 3.8e-07 59.3 183 30.1
PSO832G0043 Papaver somniferum HOM05D000293 ORTHO05D000180 3.8e-07 59.3 144 36.1
Peaxi162Scf00164g00216 Petunia axillaris HOM05D000293 ORTHO05D000180 5.0e-07 58.9 100 44.0
CANSAT64G0529 Cannabis sativa HOM05D000293 ORTHO05D000180 6.5e-07 58.5 36 66.7
Medtr1g045610 Medicago truncatula HOM05D000293 ORTHO05D000180 8.5e-07 58.2 164 34.1
Nn3g19813 Nelumbo nucifera HOM05D000293 ORTHO05D000180 8.5e-07 58.2 160 30.6
Sabra08G0132400 Salix brachista HOM05D000293 ORTHO05D000180 8.5e-07 58.2 169 35.5
THA.LOC104823882 Tarenaya hassleriana HOM05D000293 ORTHO05D000180 8.5e-07 58.2 73 46.6
TWI60G1573 Tripterygium wilfordii HOM05D000293 ORTHO05D000180 8.5e-07 58.2 163 27.6
Lj5g0014001 Lotus japonicus HOM05D000293 ORTHO05D000180 1.1e-06 57.8 149 35.6
DCAR_025451 Daucus carota HOM05D000293 ORTHO05D000180 1.5e-06 57.4 145 33.1
Glyma.20G082300 Glycine max HOM05D000293 ORTHO05D000180 1.5e-06 57.4 171 32.7
RcHm_v2.0_Chr2g0164981 Rosa chinensis HOM05D000293 ORTHO05D000180 1.5e-06 57.4 36 69.4
CAN.G812.26 Capsicum annuum HOM05D000293 ORTHO05D000180 1.9e-06 57.0 149 34.9
FAN05G1137 Fragaria x ananassa HOM05D000293 ORTHO05D000180 1.9e-06 57.0 172 32.0
Sabra16G0122100 Salix brachista HOM05D006134 ORTHO05D007671 1.9e-06 57.0 155 35.5
EL10Ac3g06708 Beta vulgaris HOM05D000293 ORTHO05D000180 2.5e-06 56.6 31 77.4
Glyma.17G162100 Glycine max HOM05D000293 ORTHO05D000180 2.5e-06 56.6 155 31.6
MD13G1224400 Malus domestica HOM05D000293 ORTHO05D000180 2.5e-06 56.6 145 36.6
FAN09G1766 Fragaria x ananassa HOM05D000293 ORTHO05D000180 3.2e-06 56.2 174 31.6
TPR.G23999 Trifolium pratense HOM05D000293 ORTHO05D000180 3.2e-06 56.2 164 31.7
CSS0046853 Camellia sinensis var. sinensis HOM05D000293 ORTHO05D000180 4.2e-06 55.8 148 35.8
ECA248G2918 Erigeron canadensis HOM05D000293 ORTHO05D000180 4.2e-06 55.8 122 38.5
Eucgr.I02057 Eucalyptus grandis HOM05D000293 ORTHO05D000180 4.2e-06 55.8 138 33.3
FvH4_6g46440 Fragaria vesca HOM05D000293 ORTHO05D000180 4.2e-06 55.8 174 31.6
FAN14G3292 Fragaria x ananassa HOM05D000293 ORTHO05D000180 4.2e-06 55.8 174 31.6
Nitab4.5_0008488g0010 Nicotiana tabacum HOM05D000293 ORTHO05D000180 4.2e-06 55.8 42 61.9
Ah.13g074920 Amaranthus hybridus HOM05D000293 ORTHO05D000180 5.5e-06 55.5 48 58.3
BcaB03g14592 Brassica carinata HOM05D000293 ORTHO05D000180 5.5e-06 55.5 31 77.4
CsaV3_5G038670 Cucumis sativus L. HOM05D000293 ORTHO05D000180 5.5e-06 55.5 37 70.3
Oeu049876.1 Olea europaea HOM05D000293 ORTHO05D000180 5.5e-06 55.5 133 33.8
THA.LOC104808739 Tarenaya hassleriana HOM05D000293 ORTHO05D000180 5.5e-06 55.5 31 77.4
BcaB06g26611 Brassica carinata HOM05D000293 ORTHO05D000180 7.2e-06 55.1 76 47.4
BcaC06g35679 Brassica carinata HOM05D000293 ORTHO05D000180 7.2e-06 55.1 76 47.4
A07p08020 Brassica napus HOM05D000293 ORTHO05D000180 7.2e-06 55.1 76 47.4
C07p12100 Brassica napus HOM05D000293 ORTHO05D000180 7.2e-06 55.1 76 47.4
BraA07t28589Z Brassica rapa HOM05D000293 ORTHO05D000180 7.2e-06 55.1 76 47.4
Oeu049875.1 Olea europaea HOM05D000293 ORTHO05D000180 7.2e-06 55.1 39 69.2


User provided reference genes

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