Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 8.2e-25 116.3 61 100.0
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 6.9e-16 86.7 48 95.8
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 4.5e-15 84.0 48 93.8
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 4.5e-15 84.0 48 93.8
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 4.5e-15 84.0 48 93.8
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 5.9e-15 83.6 48 91.7
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 7.7e-15 83.2 48 91.7
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 1.7e-14 82.0 48 89.6
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 1.7e-14 82.0 48 89.6
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 2.9e-14 81.3 48 89.6
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 2.9e-14 81.3 48 89.6
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 3.2e-13 77.8 48 85.4
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 4.2e-13 77.4 48 85.4
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 7.2e-13 76.6 54 79.6
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 9.4e-13 76.3 59 74.6
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 9.4e-13 76.3 59 74.6
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 2.1e-12 75.1 59 71.2
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 3.6e-12 74.3 48 81.2
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 4.6e-12 73.9 48 81.2
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 4.6e-12 73.9 48 81.2
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 6.1e-12 73.6 48 83.3
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 6.1e-12 73.6 48 83.3
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 1.0e-11 72.8 47 83.0
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.0e-11 72.8 48 81.2
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 1.0e-11 72.8 48 81.2
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.4e-11 72.4 48 79.2
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 1.4e-11 72.4 48 81.2
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.8e-11 72.0 48 79.2
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.8e-11 72.0 48 81.2
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 1.8e-11 72.0 48 81.2
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.8e-11 72.0 48 81.2
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 2.3e-11 71.6 59 67.8
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 2.3e-11 71.6 48 79.2
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 3.9e-11 70.9 48 81.2
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 5.1e-11 70.5 54 72.2
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 5.1e-11 70.5 48 75.0
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 6.7e-11 70.1 47 78.7
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 6.7e-11 70.1 59 69.5
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 8.8e-11 69.7 54 72.2
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 8.8e-11 69.7 48 79.2
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 8.8e-11 69.7 48 79.2
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 8.8e-11 69.7 48 79.2
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 1.1e-10 69.3 59 67.8
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.1e-10 69.3 48 77.1
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 1.1e-10 69.3 59 64.4
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 1.5e-10 68.9 48 75.0
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.5e-10 68.9 48 72.9
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 2.0e-10 68.6 48 72.9
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 2.6e-10 68.2 48 72.9
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 3.3e-10 67.8 48 70.8
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 3.3e-10 67.8 48 70.8
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 3.3e-10 67.8 54 66.7
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 4.4e-10 67.4 48 72.9
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 4.4e-10 67.4 47 74.5
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 4.4e-10 67.4 48 72.9
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 5.7e-10 67.0 47 74.5
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 7.4e-10 66.6 48 68.8
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 7.4e-10 66.6 48 75.0
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 7.4e-10 66.6 48 75.0
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 7.4e-10 66.6 48 72.9
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 7.4e-10 66.6 48 72.9
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 9.7e-10 66.2 48 75.0
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 9.7e-10 66.2 48 72.9
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.3e-09 65.9 48 75.0
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.3e-09 65.9 48 75.0
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.3e-09 65.9 48 75.0
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 1.3e-09 65.9 59 64.4
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 2.2e-09 65.1 48 68.8
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 2.2e-09 65.1 48 68.8
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 2.8e-09 64.7 48 70.8
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 2.8e-09 64.7 59 62.7
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.7e-09 64.3 48 66.7
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 3.7e-09 64.3 48 72.9
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 3.7e-09 64.3 48 75.0
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 4.8e-09 63.9 48 66.7
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 4.8e-09 63.9 48 68.8
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 4.8e-09 63.9 48 66.7
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 4.8e-09 63.9 59 62.7
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 8.2e-09 63.2 48 64.6
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 8.2e-09 63.2 48 70.8
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.1e-08 62.8 62 54.8
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 1.1e-08 62.8 48 62.5
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.1e-08 62.8 48 62.5
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 1.1e-08 62.8 48 62.5
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 1.1e-08 62.8 48 62.5
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 1.1e-08 62.8 48 62.5
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 1.1e-08 62.8 59 55.9
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.4e-08 62.4 48 62.5
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.4e-08 62.4 48 62.5
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 1.4e-08 62.4 48 62.5
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 1.8e-08 62.0 48 66.7
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.8e-08 62.0 48 64.6
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 2.4e-08 61.6 48 68.8
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 2.4e-08 61.6 59 57.6
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 3.1e-08 61.2 48 66.7
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 3.1e-08 61.2 48 66.7
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 3.1e-08 61.2 48 64.6
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 4.1e-08 60.8 47 66.0
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.2e-07 59.3 48 66.7
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 2.0e-07 58.5 48 60.4
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 2.6e-07 58.2 47 61.7
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 7.7e-07 56.6 48 60.4
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.0e-06 56.2 48 60.4
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.0e-06 56.2 48 58.3
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 1.7e-06 55.5 42 66.7
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 2.2e-06 55.1 48 60.4
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 5.0e-06 53.9 50 62.0
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 5.0e-06 53.9 50 62.0
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 8.5e-06 53.1 50 62.0


User provided reference genes

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