Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 0.0e+00 1082.4 603 100.0
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 5.8e-240 834.3 539 90.0
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 1.7e-207 726.5 500 84.2
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 4.2e-198 695.3 539 78.8
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 4.2e-198 695.3 539 78.8
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 1.0e-188 664.1 563 73.5
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 1.3e-186 657.1 558 74.0
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 7.2e-174 614.8 537 73.0
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.1e-173 613.2 541 72.5
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 5.2e-172 608.6 541 71.9
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 5.0e-151 538.9 536 63.8
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 1.8e-148 530.4 535 60.6
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 1.2e-147 527.7 538 61.5
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.2e-147 527.7 537 61.3
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 7.5e-147 525.0 536 60.8
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 9.2e-145 518.1 552 62.0
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 5.1e-143 512.3 541 57.7
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.1e-142 511.1 544 58.5
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 2.8e-141 506.5 549 56.8
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.8e-140 503.8 538 61.2
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.3e-140 503.4 526 63.3
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 4.0e-140 502.7 530 57.5
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 5.2e-140 502.3 541 61.6
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 4.4e-139 499.2 536 57.5
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 4.4e-139 499.2 556 61.0
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 4.4e-139 499.2 541 56.7
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 4.4e-139 499.2 540 58.3
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 9.9e-139 498.0 542 61.6
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 9.9e-139 498.0 542 61.8
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 3.7e-138 496.1 539 57.3
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 7.1e-137 491.9 549 55.7
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 1.6e-136 490.7 532 56.8
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.0e-135 486.5 556 59.9
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 5.1e-135 485.7 541 56.4
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 1.2e-133 481.1 508 58.1
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 4.7e-133 479.2 534 56.6
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 2.0e-131 473.8 533 57.2
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 2.0e-131 473.8 550 59.5
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 5.8e-131 472.2 538 58.6
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 4.9e-130 469.2 535 56.8
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 7.1e-129 465.3 432 70.6
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 1.1e-126 458.0 542 54.6
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 4.3e-126 456.1 530 53.0
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 1.2e-123 448.0 532 52.6
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 3.4e-123 446.4 517 54.9
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 7.6e-123 445.3 535 54.6
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 9.9e-123 444.9 534 53.0
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 1.4e-121 441.0 535 52.5
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 4.2e-121 439.5 528 53.6
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 4.6e-120 436.0 512 53.1
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 6.0e-120 435.6 532 53.8
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 2.3e-119 433.7 536 52.2
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 5.1e-119 432.6 542 53.0
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 8.7e-119 431.8 538 52.6
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 4.3e-118 429.5 517 54.5
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.6e-117 427.6 558 52.2
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 2.4e-116 423.7 540 51.9
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 1.2e-115 421.4 529 52.9
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 5.8e-115 419.1 542 52.2
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 5.8e-115 419.1 531 52.0
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 1.3e-114 417.9 528 52.7
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 2.2e-114 417.2 436 58.9
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 3.2e-113 413.3 526 51.0
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 4.6e-112 409.5 522 52.3
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 7.9e-112 408.7 542 54.6
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 1.0e-111 408.3 538 50.0
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 1.3e-111 407.9 534 56.4
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 1.8e-111 407.5 531 50.7
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 5.1e-111 406.0 528 49.8
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 5.1e-111 406.0 519 51.4
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 5.1e-111 406.0 519 51.4
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.1e-110 404.8 490 53.5
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 1.9e-110 404.1 536 50.0
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 5.6e-110 402.5 535 52.0
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 7.4e-110 402.1 579 53.5
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 4.8e-109 399.4 579 49.1
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 6.2e-109 399.1 533 54.8
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 2.4e-108 397.1 538 50.7
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 6.9e-108 395.6 527 51.6
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 1.5e-107 394.4 547 48.6
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 4.9e-106 389.4 507 50.9
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 4.9e-106 389.4 531 49.0
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 2.7e-104 383.6 519 49.3
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 3.5e-104 383.3 487 50.7
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 1.0e-103 381.7 250 81.6
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 1.3e-103 381.3 524 49.6
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 1.3e-103 381.3 524 49.6
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.8e-103 380.9 522 50.4
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 3.9e-103 379.8 547 47.9
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 3.9e-103 379.8 524 49.2
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 2.2e-98 364.0 550 47.1
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 8.4e-98 362.1 561 46.3
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 4.6e-96 356.3 527 47.8
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 7.9e-96 355.5 531 45.8
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.6e-93 347.8 409 54.0
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 2.1e-88 330.9 615 41.8
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 2.3e-79 300.8 287 61.7
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 3.7e-77 293.5 629 37.4
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 5.9e-75 286.2 304 56.6
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 1.8e-71 274.6 252 63.5
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 8.2e-69 265.8 331 50.8
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 1.0e-66 258.8 313 49.2
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 5.0e-66 256.5 318 51.6
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 5.0e-66 256.5 318 51.6
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 9.4e-65 252.3 250 62.8
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 1.6e-56 224.9 270 58.9
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 6.6e-50 203.0 290 48.3
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 1.5e-49 201.8 351 40.2
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.7e-45 188.3 247 49.8
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.8e-44 184.9 180 59.4
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.6e-43 181.8 264 50.0
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 4.4e-38 163.7 137 63.5
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 8.3e-37 159.5 99 80.8
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 2.0e-35 154.8 157 59.2
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 3.5e-35 154.1 99 78.8
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 2.3e-34 151.4 129 62.8
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 3.0e-34 151.0 281 42.0
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 2.4e-28 131.3 188 48.4
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 5.4e-20 103.6 352 30.1
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.5e-17 95.5 142 50.7
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.5e-17 95.5 174 44.8
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 3.1e-15 87.8 69 68.1
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 5.2e-15 87.0 275 30.5
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 9.9e-14 82.8 70 64.3
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 9.3e-12 76.3 108 48.1
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 3.9e-10 70.9 144 39.6


User provided reference genes

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