Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G241650 Glycine max HOM05D008036 ORTHO05D000174 4.0e-63 244.6 124 100.0
Medtr6g465570 Medicago truncatula HOM05D008036 ORTHO05D008317 6.8e-18 94.4 121 43.8
Medtr7g110100 Medicago truncatula HOM05D008036 ORTHO05D000174 3.7e-16 88.6 121 38.8
TPR.G13367 Trifolium pratense HOM05D008036 ORTHO05D000174 8.3e-16 87.4 118 38.1
Medtr1g105785 Medicago truncatula HOM05D008036 ORTHO05D000174 2.4e-15 85.9 119 40.3
Medtr3g452170 Medicago truncatula HOM05D008036 ORTHO05D000174 3.1e-15 85.5 121 38.0
Medtr1g052715 Medicago truncatula HOM05D008036 ORTHO05D000174 5.4e-15 84.7 120 40.0
Medtr7g051400 Medicago truncatula HOM05D008036 ORTHO05D000174 5.4e-15 84.7 114 41.2
Medtr8g465040 Medicago truncatula HOM05D008036 ORTHO05D000174 5.4e-15 84.7 119 38.7
TPR.G14233 Trifolium pratense HOM05D000096 ORTHO05D000045 9.1e-15 84.0 116 38.8
TPR.G5052 Trifolium pratense HOM05D000096 ORTHO05D000045 4.5e-14 81.6 116 38.8
TPR.G24036 Trifolium pratense HOM05D000096 ORTHO05D009933 7.7e-14 80.9 116 38.8
Medtr7g051840 Medicago truncatula HOM05D008036 ORTHO05D000174 1.0e-13 80.5 113 39.8
TPR.G9555 Trifolium pratense HOM05D000096 ORTHO05D000045 1.0e-13 80.5 116 37.9
TPR.G21729 Trifolium pratense HOM05D003813 ORTHO05D004557 3.8e-13 78.6 118 38.1
Medtr1g051235 Medicago truncatula HOM05D008036 ORTHO05D008317 2.5e-12 75.9 123 37.4
TPR.G25065 Trifolium pratense HOM05D008036 ORTHO05D000174 4.2e-12 75.1 93 47.3
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 1.6e-11 73.2 132 35.6
Medtr6g073570 Medicago truncatula HOM05D008036 ORTHO05D000174 1.6e-11 73.2 117 34.2
Medtr7g045450 Medicago truncatula HOM05D008036 ORTHO05D000174 1.6e-11 73.2 117 34.2
TPR.G20009 Trifolium pratense HOM05D008036 ORTHO05D000174 2.1e-11 72.8 95 44.2
arahy.Tifrunner.gnm1.ann1.M6VUS2 Arachis hypogaea HOM05D008664 ORTHO05D000174 6.1e-11 71.2 129 27.9
EL10Ac1g00284 Beta vulgaris HOM05D000353 ORTHO05D000174 1.4e-10 70.1 123 35.8
Medtr7g070110 Medicago truncatula HOM05D008036 ORTHO05D000174 1.4e-10 70.1 84 39.3
EL10Ac7g16273 Beta vulgaris HOM05D000353 ORTHO05D000174 1.8e-10 69.7 123 36.6
Medtr4g017450 Medicago truncatula HOM05D008036 ORTHO05D000174 2.3e-10 69.3 96 41.7
Lalb_Chr02g0152971 Lupinus albus HOM05D002090 ORTHO05D001923 8.8e-10 67.4 89 39.3
arahy.Tifrunner.gnm1.ann1.JMQ4U7 Arachis hypogaea HOM05D008664 ORTHO05D000174 1.2e-09 67.0 94 36.2
arahy.Tifrunner.gnm1.ann1.UD52B8 Arachis hypogaea HOM05D008664 ORTHO05D000174 1.5e-09 66.6 130 30.8
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 1.5e-09 66.6 105 36.2
arahy.Tifrunner.gnm1.ann1.AJVM0N Arachis hypogaea HOM05D008664 ORTHO05D000174 2.0e-09 66.2 117 29.1
arahy.Tifrunner.gnm1.ann1.U14C6K Arachis hypogaea HOM05D008664 ORTHO05D000174 2.0e-09 66.2 117 29.1
Lalb_Chr11g0071391 Lupinus albus HOM05D002090 ORTHO05D001923 2.6e-09 65.9 96 37.5
arahy.Tifrunner.gnm1.ann1.7L6ESV Arachis hypogaea HOM05D008664 ORTHO05D000174 3.4e-09 65.5 117 29.1
arahy.Tifrunner.gnm1.ann1.7R55CH Arachis hypogaea HOM05D008664 ORTHO05D000174 3.4e-09 65.5 117 29.1
arahy.Tifrunner.gnm1.ann1.VX4W4R Arachis hypogaea HOM05D008664 ORTHO05D000174 3.4e-09 65.5 117 29.1
arahy.Tifrunner.gnm1.ann1.W2LWD3 Arachis hypogaea HOM05D008664 ORTHO05D000174 4.4e-09 65.1 117 29.1
SGA_v2.0_scaffold69G23109 Striga asiatica HOM05D011787 ORTHO05D008317 4.4e-09 65.1 89 33.7
SGA_v2.0_scaffold30G12418 Striga asiatica HOM05D011787 ORTHO05D008317 5.7e-09 64.7 89 33.7
TPR.G402 Trifolium pratense HOM05D008036 ORTHO05D000174 7.5e-09 64.3 85 43.5
arahy.Tifrunner.gnm1.ann1.64IA1E Arachis hypogaea HOM05D008664 ORTHO05D000174 9.8e-09 63.9 117 27.4
Lalb_Chr09g0332941 Lupinus albus HOM05D002090 ORTHO05D001923 1.3e-08 63.5 96 35.4
arahy.Tifrunner.gnm1.ann1.02KJQT Arachis hypogaea HOM05D008664 ORTHO05D000174 2.2e-08 62.8 117 29.1
arahy.Tifrunner.gnm1.ann1.PUQ8PF Arachis hypogaea HOM05D002441 ORTHO05D002376 2.2e-08 62.8 111 35.1
Medtr3g056270 Medicago truncatula HOM05D000353 ORTHO05D000174 2.2e-08 62.8 90 36.7
TPR.G40259 Trifolium pratense HOM05D008036 ORTHO05D000174 2.2e-08 62.8 78 44.9
arahy.Tifrunner.gnm1.ann1.P65711 Arachis hypogaea HOM05D008664 ORTHO05D000174 2.8e-08 62.4 117 28.2
Lalb_Chr04g0253881 Lupinus albus HOM05D002090 ORTHO05D001923 2.8e-08 62.4 88 37.5
Medtr3g056240 Medicago truncatula HOM05D000353 ORTHO05D000174 2.8e-08 62.4 90 36.7
arahy.Tifrunner.gnm1.ann1.0VM956 Arachis hypogaea HOM05D008664 ORTHO05D000174 3.7e-08 62.0 117 28.2
ECA238G1832 Erigeron canadensis HOM05D000096 ORTHO05D000045 3.7e-08 62.0 105 33.3
Lalb_Chr14g0362191 Lupinus albus HOM05D002090 ORTHO05D001923 3.7e-08 62.0 98 36.7
Medtr4g036240 Medicago truncatula HOM05D000353 ORTHO05D000174 3.7e-08 62.0 90 35.6
Medtr7g039300 Medicago truncatula HOM05D008036 ORTHO05D000174 4.9e-08 61.6 84 38.1
LjContig00155g0001945 Lotus japonicus HOM05D000353 ORTHO05D000174 8.3e-08 60.8 87 35.6
Psat6g240360 Pisum sativum HOM05D002090 ORTHO05D001923 8.3e-08 60.8 86 40.7
Aqoxy4G01383 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 1.4e-07 60.1 93 37.6
Aqoxy4G03175 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 1.4e-07 60.1 93 37.6
Aqoxy5G04189 Aquilegia oxysepala HOM05D002907 ORTHO05D000065 1.4e-07 60.1 93 37.6
Lalb_Chr11g0070891 Lupinus albus HOM05D002090 ORTHO05D001923 1.4e-07 60.1 87 37.9
Lalb_Chr13g0293801 Lupinus albus HOM05D002090 ORTHO05D001923 2.4e-07 59.3 98 35.7
Lalb_Chr20g0113671 Lupinus albus HOM05D002090 ORTHO05D001923 2.4e-07 59.3 88 35.2
arahy.Tifrunner.gnm1.ann1.LS6UG6 Arachis hypogaea HOM05D008664 ORTHO05D000174 3.1e-07 58.9 111 28.8
arahy.Tifrunner.gnm1.ann1.VCM3ME Arachis hypogaea HOM05D008664 ORTHO05D000174 3.1e-07 58.9 111 28.8
ECA246G4325 Erigeron canadensis HOM05D000353 ORTHO05D000174 3.1e-07 58.9 118 30.5
Medtr7g096440 Medicago truncatula HOM05D000096 ORTHO05D000045 3.1e-07 58.9 112 33.0
arahy.Tifrunner.gnm1.ann1.2DB70H Arachis hypogaea HOM05D002441 ORTHO05D008317 1.2e-06 57.0 111 33.3
arahy.Tifrunner.gnm1.ann1.GSMT98 Arachis hypogaea HOM05D008664 ORTHO05D000174 1.2e-06 57.0 86 30.2
Lalb_Chr05g0224101 Lupinus albus HOM05D002090 ORTHO05D001923 1.2e-06 57.0 88 35.2
arahy.Tifrunner.gnm1.ann1.E8Q8VF Arachis hypogaea HOM05D008664 ORTHO05D000174 1.6e-06 56.6 93 28.0
Nitab4.5_0004069g0050 Nicotiana tabacum HOM05D002441 ORTHO05D008317 1.6e-06 56.6 81 35.8
Psat4g107960 Pisum sativum HOM05D016976 ORTHO05D000174 1.6e-06 56.6 108 29.6
TAR629G1891 Trochodendron aralioides HOM05D000824 ORTHO05D000065 1.6e-06 56.6 118 30.5
Medtr2g062200 Medicago truncatula HOM05D007848 ORTHO05D000174 2.0e-06 56.2 104 32.7
TPR.G23697 Trifolium pratense HOM05D008036 ORTHO05D008317 2.0e-06 56.2 60 45.0
ECA236G0169 Erigeron canadensis HOM05D000353 ORTHO05D000174 2.7e-06 55.8 105 33.3
Lalb_Chr11g0068191 Lupinus albus HOM05D002090 ORTHO05D001923 2.7e-06 55.8 98 30.6
TPR.G40139 Trifolium pratense HOM05D000096 ORTHO05D000045 2.7e-06 55.8 88 35.2
Lalb_Chr11g0072891 Lupinus albus HOM05D002090 ORTHO05D001923 3.5e-06 55.5 98 30.6
AT2G05642 Arabidopsis thaliana HOM05D000353 ORTHO05D000174 4.5e-06 55.1 63 42.9
A09p11230 Brassica napus HOM05D000353 ORTHO05D000174 4.5e-06 55.1 112 33.9
Lj3g0016345 Lotus japonicus HOM05D000353 ORTHO05D000174 4.5e-06 55.1 82 37.8
Lalb_Chr07g0192401 Lupinus albus HOM05D002090 ORTHO05D001923 4.5e-06 55.1 88 33.0
Medtr2g054710 Medicago truncatula HOM05D000353 ORTHO05D000174 4.5e-06 55.1 90 33.3
Nitab4.5_0001245g0050 Nicotiana tabacum HOM05D002907 ORTHO05D000065 4.5e-06 55.1 101 34.7
Nitab4.5_0002746g0030 Nicotiana tabacum HOM05D002907 ORTHO05D000065 4.5e-06 55.1 82 36.6
Psat0s2406g0320 Pisum sativum HOM05D002090 ORTHO05D001923 4.5e-06 55.1 74 41.9
TPR.G9984 Trifolium pratense HOM05D005770 ORTHO05D006702 5.9e-06 54.7 107 34.6
Medtr2g008650 Medicago truncatula HOM05D000353 ORTHO05D000174 7.7e-06 54.3 90 32.2
Psat0s3648g0040 Pisum sativum HOM05D002090 ORTHO05D001923 7.7e-06 54.3 73 38.4


User provided reference genes

Program Settings