Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G225400 Glycine max HOM05D007236 ORTHO05D009150 2.1e-206 722.2 394 100.0
Glyma.07G001600 Glycine max HOM05D007236 ORTHO05D009150 1.2e-180 636.7 399 87.2
VMungo0331G1697 Vigna mungo HOM05D007236 ORTHO05D009150 8.9e-173 610.5 395 84.3
Lj3g0020822 Lotus japonicus HOM05D007236 ORTHO05D009150 4.7e-166 588.2 395 80.3
Psat7g265040 Pisum sativum HOM05D007236 ORTHO05D009150 3.9e-152 542.0 415 74.0
Ca_20979_v3 Cicer arietinum L. HOM05D007236 ORTHO05D009150 2.2e-147 526.2 401 73.8
arahy.Tifrunner.gnm1.ann1.I3AU87 Arachis hypogaea HOM05D007236 ORTHO05D009150 2.9e-147 525.8 409 73.8
arahy.Tifrunner.gnm1.ann1.QM8PPU Arachis hypogaea HOM05D007236 ORTHO05D009150 5.6e-143 511.5 437 69.1
Duzib160G0063 Durio zibethinus HOM05D007236 ORTHO05D009150 1.8e-141 506.5 398 67.8
QL05p088536 Quercus lobata HOM05D007236 ORTHO05D009150 9.9e-140 500.7 373 71.8
Thecc.06G055000 Theobroma cacao HOM05D007236 ORTHO05D009150 9.9e-140 500.7 392 67.9
Medtr4g005300 Medicago truncatula HOM05D007236 ORTHO05D009150 1.1e-138 497.3 332 78.9
Manes.06G179100 Manihot esculenta HOM05D007236 ORTHO05D009150 8.7e-136 487.6 394 67.0
GSVIVG01029561001 Vitis vinifera HOM05D007236 ORTHO05D009150 9.6e-135 484.2 388 66.8
Prupe.3G024200 Prunus persica HOM05D007236 ORTHO05D009150 4.8e-134 481.9 390 69.0
Dinv20327 Davidia involucrata HOM05D007236 ORTHO05D009150 3.4e-132 475.7 388 67.0
TAR636G0504 Trochodendron aralioides HOM05D007236 ORTHO05D009150 1.4e-130 470.3 386 65.3
RcHm_v2.0_Chr2g0149221 Rosa chinensis HOM05D007236 ORTHO05D009150 1.9e-130 469.9 400 67.2
FAN09G1281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 3.2e-130 469.2 397 62.5
FvH4_6g36830 Fragaria vesca HOM05D007236 ORTHO05D009150 1.2e-129 467.2 397 63.0
Potri.008G003800 Populus trichocarpa HOM05D007236 ORTHO05D009150 1.6e-129 466.8 394 65.0
Gohir.A06G116300 Gossypium hirsutum HOM05D007236 ORTHO05D009150 2.7e-129 466.1 397 64.2
FAN14G0281 Fragaria x ananassa HOM05D007236 ORTHO05D009150 6.0e-129 464.9 397 62.5
Sabra08G0001500 Salix brachista HOM05D007236 ORTHO05D009150 8.7e-128 461.1 403 63.5
Hund05669 Selenicereus undatus HOM05D007236 ORTHO05D009150 1.9e-127 459.9 381 64.3
Gorai.010G141500 Gossypium raimondii HOM05D007236 ORTHO05D009150 2.5e-127 459.5 408 63.0
MD09G1166500 Malus domestica HOM05D007236 ORTHO05D009150 4.8e-126 455.3 390 63.3
Nn5g27081 Nelumbo nucifera HOM05D007236 ORTHO05D009150 6.3e-126 454.9 417 61.4
FAN05G3464 Fragaria x ananassa HOM05D007236 ORTHO05D009150 8.2e-126 454.5 425 58.8
Actinidia31123 Actinidia chinensis HOM05D007236 ORTHO05D009150 5.3e-125 451.8 406 61.6
TWI18G0405 Tripterygium wilfordii HOM05D007236 ORTHO05D009150 6.9e-125 451.4 405 62.2
THA.LOC104812331 Tarenaya hassleriana HOM05D007236 ORTHO05D009150 9.0e-125 451.1 401 62.6
TPR.G38815 Trifolium pratense HOM05D007236 ORTHO05D009150 9.0e-125 451.1 332 75.0
Eucgr.J03184 Eucalyptus grandis HOM05D007236 ORTHO05D009150 2.6e-124 449.5 408 61.5
Sp5g33940 Schrenkiella parvula HOM05D007236 ORTHO05D009150 3.4e-124 449.1 380 62.6
AUR62025709 Chenopodium quinoa HOM05D007236 ORTHO05D009150 1.4e-122 443.7 394 60.2
MELO3C026715.2 Cucumis melo HOM05D007236 ORTHO05D009150 4.2e-122 442.2 385 62.6
AL2G39340 Arabidopsis lyrata HOM05D007236 ORTHO05D009150 1.2e-121 440.7 393 61.8
Carub.0002s2575 Capsella rubella HOM05D007236 ORTHO05D009150 2.7e-121 439.5 395 61.5
CsaV3_3G030460 Cucumis sativus L. HOM05D007236 ORTHO05D009150 3.6e-121 439.1 385 61.8
CARHR072510 Cardamine hirsuta HOM05D007236 ORTHO05D009150 1.3e-120 437.2 395 60.0
ClCG07G014680 Citrullus lanatus HOM05D007236 ORTHO05D009150 3.9e-120 435.6 339 67.0
BcaC08g45402 Brassica carinata HOM05D007236 ORTHO05D009150 1.9e-119 433.3 390 61.3
AT1G78915 Arabidopsis thaliana HOM05D007236 ORTHO05D009150 7.4e-119 431.4 400 58.8
PGR031G2337 Punica granatum HOM05D007236 ORTHO05D009150 1.7e-118 430.3 342 66.7
BcaB02g07186 Brassica carinata HOM05D007236 ORTHO05D009150 3.7e-118 429.1 381 61.2
Aa31LG4G2080 Aethionema arabicum HOM05D007236 ORTHO05D009150 3.1e-117 426.0 395 60.3
Sopen03g041760 Solanum pennellii HOM05D007236 ORTHO05D009150 5.3e-117 425.2 352 64.2
BolC6t38197H Brassica oleracea HOM05D007236 ORTHO05D009150 6.9e-117 424.9 401 59.6
Solyc03g124030.4 Solanum lycopersicum HOM05D007236 ORTHO05D009150 9.1e-117 424.5 352 64.2
COL.COLO4_31136 Corchorus olitorius HOM05D007236 ORTHO05D009150 1.2e-116 424.1 357 64.1
ECA234G1409 Erigeron canadensis HOM05D007236 ORTHO05D009150 1.0e-115 421.0 344 65.1
A07p27420 Brassica napus HOM05D007236 ORTHO05D009150 2.2e-115 419.9 340 64.7
Aqoxy5G00022 Aquilegia oxysepala HOM05D007236 ORTHO05D009150 5.0e-115 418.7 385 59.0
HanXRQChr10g0311241 Helianthus annuus HOM05D007236 ORTHO05D009150 6.5e-115 418.3 374 60.2
SGA_v2.0_scaffold71G23973 Striga asiatica HOM05D007236 ORTHO05D009150 1.9e-114 416.8 377 61.3
C06p30340 Brassica napus HOM05D007236 ORTHO05D009150 5.5e-114 415.2 349 64.5
Cc04_g00020 Coffea canephora HOM05D007236 ORTHO05D009150 1.2e-113 414.1 344 64.2
Sed0012172 Sechium edule HOM05D007236 ORTHO05D009150 1.2e-113 414.1 351 62.4
Lsat_1_v5_gn_5_137160 Lactuca sativa HOM05D007236 ORTHO05D009150 1.8e-112 410.2 341 62.8
Oeu039939.2 Olea europaea HOM05D007236 ORTHO05D009150 1.5e-111 407.1 336 65.2
BraA07t30383Z Brassica rapa HOM05D007236 ORTHO05D009150 1.4e-109 400.6 412 56.6
Zm00001eb305180 Zea mays HOM05D007236 ORTHO05D009150 5.0e-107 392.1 391 54.7
AUR62001326 Chenopodium quinoa HOM05D007236 ORTHO05D009150 1.4e-106 390.6 333 61.0
CDE05G3570 Ceratophyllum demersum HOM05D007236 ORTHO05D008204 1.9e-106 390.2 383 57.4
DCAR_016079 Daucus carota HOM05D007236 ORTHO05D009150 1.5e-103 380.6 377 56.8
Sc12g0011240 Simmondsia chinensis HOM05D000518 ORTHO05D000737 7.0e-101 371.7 297 65.3
ATR0215G005 Amborella trichopoda HOM05D007236 ORTHO05D009150 2.0e-100 370.2 364 56.9
unitig_32.g11550 Utricularia gibba HOM05D007236 ORTHO05D009150 2.0e-100 370.2 345 56.5
vmacro12583 Vaccinium macrocarpon HOM05D007236 ORTHO05D009150 4.5e-100 369.0 352 58.0
Migut.I01208 Erythranthe guttata HOM05D007236 ORTHO05D009150 2.9e-99 366.3 306 64.4
Lalb_Chr01g0011631 Lupinus albus HOM05D007236 ORTHO05D009150 2.1e-97 360.1 216 85.2
Gohir.D06G121200 Gossypium hirsutum HOM05D007236 ORTHO05D009150 1.3e-94 350.9 397 52.6
Thhalv10018805m.g Eutrema salsugineum HOM05D007236 ORTHO05D009150 4.8e-94 349.0 381 54.1
CiPaw.01G207800 Carya illinoinensis HOM05D007236 ORTHO05D009150 2.7e-92 343.2 310 63.2
Rhsim02G0000100 Rhododendron simsii HOM05D007236 ORTHO05D009150 3.0e-88 329.7 434 46.8
SEGI_39602 Sequoiadendron giganteum HOM05D007236 ORTHO05D009150 2.6e-87 326.6 346 52.3
Sc12g0011350 Simmondsia chinensis HOM05D007236 ORTHO05D009150 1.7e-86 323.9 244 67.6
Peaxi162Scf00038g02668 Petunia axillaris HOM05D007236 ORTHO05D009150 8.3e-86 321.6 314 56.4
MSTRG.22498 Avicennia marina HOM05D007236 ORTHO05D009150 1.4e-85 320.9 356 52.8
PSO170G4015 Papaver somniferum HOM05D007236 ORTHO05D009150 3.4e-79 299.7 404 47.3
PSO357G0009 Papaver somniferum HOM05D007236 ORTHO05D009150 4.9e-78 295.8 394 48.2
Haze_16198 Corylus avellana HOM05D007236 ORTHO05D009150 7.0e-77 292.0 273 59.3
CAN.G790.6 Capsicum annuum HOM05D007236 ORTHO05D009150 1.5e-71 274.2 200 69.5
Ciclev10013942m.g Citrus clementina HOM05D007236 ORTHO05D009150 8.3e-70 268.5 186 76.3
FAN02G2413 Fragaria x ananassa HOM05D007236 ORTHO05D009150 5.4e-69 265.8 298 52.0
SMO117G0135 Selaginella moellendorffii HOM05D007236 ORTHO05D009150 1.7e-67 260.8 351 44.7
Lj9A543T71 Lonicera japonica HOM05D007236 ORTHO05D009150 2.5e-66 256.9 186 72.6
Pp3c5_19050 Physcomitrium patens HOM05D007236 ORTHO05D009150 4.9e-62 242.7 340 42.9
EL10Ac7g18131 Beta vulgaris HOM05D007236 ORTHO05D009150 1.2e-60 238.0 259 52.5
AagrBONN_evm.TU.Sc2ySwM_117.3884 Anthoceros agrestis HOM05D007236 ORTHO05D009150 6.0e-60 235.7 366 40.7
Mapoly0075s0045 Marchantia polymorpha HOM05D007236 ORTHO05D009150 3.3e-58 229.9 357 39.2
Cpa.g.sc176.15 Carica papaya HOM05D007236 ORTHO05D009150 7.3e-50 202.2 218 53.2
Atru.chr1.2627 Acer truncatum HOM05D007236 ORTHO05D009150 1.3e-46 191.4 137 71.5
Ciclev10013945m.g Citrus clementina HOM05D007236 ORTHO05D009150 9.3e-37 158.7 118 69.5
Atru.chr1.2630 Acer truncatum HOM05D007236 ORTHO05D009150 1.1e-34 151.8 124 62.9
Nitab4.5_0000499g0120 Nicotiana tabacum HOM05D007236 ORTHO05D009150 3.3e-34 150.2 113 65.5
CANSAT01G0299 Cannabis sativa HOM05D007236 ORTHO05D009150 1.1e-32 145.2 104 72.1
Lj9A543T70 Lonicera japonica HOM05D007236 ORTHO05D009150 1.9e-29 134.4 99 68.7
Os07g0287100 Oryza sativa ssp. japonica HOM05D007236 ORTHO05D009150 7.4e-26 122.5 168 44.0
PRCOL_00005889 Prasinoderma coloniale HOM05D007236 ORTHO05D009150 7.4e-26 122.5 336 31.8
CSS0013667 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 9.6e-26 122.1 81 76.5
Cre12.g554103 Chlamydomonas reinhardtii HOM05D007236 ORTHO05D009150 1.1e-21 108.6 351 27.6
CSS0007704 Camellia sinensis var. sinensis HOM05D007236 ORTHO05D009150 7.1e-21 105.9 87 60.9
Haze_16199 Corylus avellana HOM05D007236 ORTHO05D009150 3.4e-15 87.0 66 69.7
MCO09G516 Micromonas commoda HOM05D007236 ORTHO05D009150 3.8e-14 83.6 369 26.3
Nitab4.5_0000499g0130 Nicotiana tabacum HOM05D007236 ORTHO05D009150 3.3e-10 70.5 55 63.6
Aa31sc24G50 Aethionema arabicum HOM05D002308 ORTHO05D002535 5.7e-10 69.7 133 38.3
Oeu060057.1 Olea europaea HOM05D001509 ORTHO05D001361 1.5e-07 61.6 221 25.8
THA.LOC104823250 Tarenaya hassleriana HOM05D001509 ORTHO05D001361 1.0e-06 58.9 233 24.9
Glyma.04G169700 Glycine max HOM05D007236 ORTHO05D009150 1.3e-06 58.5 34 85.3


User provided reference genes

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