Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 2.6e-36 154.8 78 100.0
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 2.3e-32 141.7 76 93.4
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 3.1e-29 131.3 77 83.1
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 1.0e-27 126.3 75 81.3
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 2.9e-27 124.8 71 84.5
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 3.2e-26 121.3 76 77.6
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 9.4e-26 119.8 71 76.1
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 2.1e-25 118.6 76 69.7
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 8.0e-25 116.7 75 70.7
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 8.0e-25 116.7 76 72.4
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.0e-24 116.3 71 77.5
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.0e-24 116.3 70 80.0
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 1.0e-24 116.3 74 74.3
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 3.0e-24 114.8 77 71.4
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 3.0e-24 114.8 75 69.3
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 5.2e-24 114.0 71 71.8
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 6.8e-24 113.6 77 67.5
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 1.2e-23 112.8 68 73.5
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 2.0e-23 112.1 70 74.3
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 3.4e-23 111.3 68 75.0
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 3.4e-23 111.3 75 69.3
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 3.4e-23 111.3 75 68.0
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 4.4e-23 110.9 67 76.1
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 5.7e-23 110.5 69 71.0
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 7.5e-23 110.2 67 74.6
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 7.5e-23 110.2 67 73.1
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 9.8e-23 109.8 68 75.0
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 9.8e-23 109.8 67 73.1
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 9.8e-23 109.8 71 73.2
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.3e-22 109.4 69 71.0
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 1.7e-22 109.0 70 71.4
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.8e-22 108.2 71 71.8
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 3.7e-22 107.8 76 64.5
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 3.7e-22 107.8 71 70.4
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 4.9e-22 107.5 69 69.6
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 4.9e-22 107.5 69 69.6
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 6.3e-22 107.1 69 68.1
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 6.3e-22 107.1 71 69.0
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 8.3e-22 106.7 65 70.8
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 8.3e-22 106.7 69 68.1
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 1.1e-21 106.3 69 69.6
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 1.4e-21 105.9 69 72.5
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 2.4e-21 105.1 65 69.2
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 3.1e-21 104.8 72 68.1
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 3.1e-21 104.8 74 62.2
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 3.1e-21 104.8 75 61.3
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 3.1e-21 104.8 74 66.2
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 4.1e-21 104.4 74 67.6
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 7.0e-21 103.6 68 70.6
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 9.1e-21 103.2 75 65.3
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 9.1e-21 103.2 75 65.3
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 2.0e-20 102.1 68 63.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.0e-20 102.1 68 67.6
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 3.5e-20 101.3 78 61.5
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 3.5e-20 101.3 77 64.9
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 4.5e-20 100.9 70 64.3
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 5.9e-20 100.5 76 59.2
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 7.7e-20 100.1 62 71.0
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 1.0e-19 99.8 58 75.9
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.0e-19 99.8 75 61.3
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.3e-19 99.4 77 62.3
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 2.9e-19 98.2 74 62.2
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 2.9e-19 98.2 74 63.5
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 3.8e-19 97.8 70 67.1
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 3.8e-19 97.8 68 69.1
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 6.6e-19 97.1 78 61.5
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 8.6e-19 96.7 70 65.7
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 8.6e-19 96.7 78 57.7
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 8.6e-19 96.7 76 60.5
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 3.3e-18 94.7 75 62.7
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 3.3e-18 94.7 89 53.9
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 4.2e-18 94.4 69 60.9
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 5.5e-18 94.0 75 58.7
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 7.2e-18 93.6 75 58.7
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 7.2e-18 93.6 75 58.7
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.3e-16 88.6 75 56.0
TPR.G3325 Trifolium pratense HOM05D006125 ORTHO05D007404 8.9e-16 86.7 73 60.3
Thhalv10019388m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 9.8e-15 83.2 52 61.5
CDE03G0106 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 2.2e-14 82.0 75 53.3
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 2.2e-14 82.0 72 54.2
CDE06G2663 Ceratophyllum demersum HOM05D006125 ORTHO05D007404 4.9e-14 80.9 70 55.7
Sp5g34850 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.1e-13 79.7 67 52.2
Peaxi162Scf00553g00539 Petunia axillaris HOM05D006125 ORTHO05D007404 4.1e-13 77.8 70 57.1
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 7.0e-13 77.0 109 39.4
AT1G80890 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 1.2e-12 76.3 77 48.1
A07p44800 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-12 76.3 52 57.7
C06p53620 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-12 76.3 52 57.7
THA.LOC104808176 Tarenaya hassleriana HOM05D006125 ORTHO05D007404 2.7e-12 75.1 72 50.0
Carub.0001s1580 Capsella rubella HOM05D006125 ORTHO05D007404 4.6e-12 74.3 71 47.9
BraA07t31987Z Brassica rapa HOM05D006125 ORTHO05D007404 5.9e-12 73.9 56 55.4
BcaC08g47537 Brassica carinata HOM05D006125 ORTHO05D007404 7.8e-12 73.6 51 56.9
BolC6t40378H Brassica oleracea HOM05D006125 ORTHO05D007404 7.8e-12 73.6 51 56.9
Cpa.g.sc10.63 Carica papaya HOM05D006125 ORTHO05D007404 1.0e-11 73.2 71 50.7
Aa31LG4G1200 Aethionema arabicum HOM05D006125 ORTHO05D007404 1.7e-11 72.4 46 56.5
AT1G16000 Arabidopsis thaliana HOM05D006125 ORTHO05D007404 3.9e-11 71.2 71 45.1
COL.COLO4_26743 Corchorus olitorius HOM05D006125 ORTHO05D007404 3.9e-11 71.2 49 65.3
BcaB02g08714 Brassica carinata HOM05D006125 ORTHO05D007404 5.0e-11 70.9 51 54.9
Thhalv10009235m.g Eutrema salsugineum HOM05D006125 ORTHO05D007404 5.0e-11 70.9 66 48.5
DCAR_021146 Daucus carota HOM05D006125 ORTHO05D007404 8.6e-11 70.1 48 56.2
Aqoxy7G03387 Aquilegia oxysepala HOM05D006125 ORTHO05D007404 1.1e-10 69.7 56 57.1
AL1G28160 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 1.1e-10 69.7 71 43.7
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 1.9e-10 68.9 63 47.6
Aa31LG7G580 Aethionema arabicum HOM05D006125 ORTHO05D007404 2.5e-10 68.6 71 43.7
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.5e-10 68.6 46 56.5
Cfa017829 Carpinus fangiana HOM05D006125 ORTHO05D007404 3.3e-10 68.2 40 67.5
Dinv23278 Davidia involucrata HOM05D006125 ORTHO05D007404 9.5e-10 66.6 48 56.2
A07p26910 Brassica napus HOM05D006125 ORTHO05D007404 1.2e-09 66.2 66 47.0
Sp1g14310 Schrenkiella parvula HOM05D006125 ORTHO05D007404 1.6e-09 65.9 54 50.0
SHI11295 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-09 65.5 48 54.2
SEGI_23088 Sequoiadendron giganteum HOM05D006125 ORTHO05D007404 3.6e-09 64.7 40 60.0
BcaC08g45345 Brassica carinata HOM05D006125 ORTHO05D007404 6.2e-09 63.9 66 45.5
C06p29590 Brassica napus HOM05D006125 ORTHO05D007404 6.2e-09 63.9 66 45.5
BolC6t38124H Brassica oleracea HOM05D006125 ORTHO05D007404 6.2e-09 63.9 66 45.5
BraA07t30336Z Brassica rapa HOM05D006125 ORTHO05D007404 6.2e-09 63.9 66 45.5
Haze_20423 Corylus avellana HOM05D006125 ORTHO05D007404 6.2e-09 63.9 58 50.0
HanXRQChr08g0219721 Helianthus annuus HOM05D006125 ORTHO05D007404 6.2e-09 63.9 42 54.8
QL04p040226 Quercus lobata HOM05D006125 ORTHO05D007404 1.0e-08 63.2 45 53.3
Potri.003G183501 Populus trichocarpa HOM05D006125 ORTHO05D007404 1.8e-08 62.4 48 50.0
CARHR016510 Cardamine hirsuta HOM05D006125 ORTHO05D007404 2.3e-08 62.0 47 48.9
SGA_v2.0_scaffold5G02790 Striga asiatica HOM05D006125 ORTHO05D007404 3.1e-08 61.6 40 57.5
vmacro19061 Vaccinium macrocarpon HOM05D006125 ORTHO05D007404 6.8e-08 60.5 39 59.0
CsaV3_7G031850 Cucumis sativus L. HOM05D006125 ORTHO05D007404 1.2e-07 59.7 45 55.6
BcaB02g07240 Brassica carinata HOM05D005650 ORTHO05D007020 1.5e-07 59.3 41 51.2
Sabra03G0134100 Salix brachista HOM05D006125 ORTHO05D007404 1.5e-07 59.3 157 28.0
Mapoly0116s0019 Marchantia polymorpha HOM05D006125 ORTHO05D007404 2.0e-07 58.9 42 54.8
SalBow6G4114 Salvia bowleyana HOM05D006125 ORTHO05D007404 7.5e-07 57.0 44 50.0
BolC2t09694H Brassica oleracea HOM05D006125 ORTHO05D007404 9.8e-07 56.6 44 47.7
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 2.2e-06 55.5 65 44.6


User provided reference genes

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